Wall clock time and date at job start Mon Mar 30 2020 01:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46895 * 109.46934 * 2 1 4 4 C 1.46894 * 110.99987 * 64.95239 * 3 2 1 5 5 C 1.50703 * 109.47209 * 71.74911 * 4 3 2 6 6 C 1.38260 * 119.99519 * 255.42712 * 5 4 3 7 7 C 1.38217 * 119.99586 * 179.74360 * 6 5 4 8 8 C 1.38254 * 120.00075 * 0.55521 * 7 6 5 9 9 C 1.38218 * 119.99846 * 359.70278 * 8 7 6 10 10 C 1.38209 * 120.00446 * 75.70671 * 5 4 3 11 11 C 1.50706 * 119.99553 * 359.97438 * 10 5 4 12 12 C 1.46903 * 111.00282 * 300.98963 * 3 2 1 13 13 C 1.52993 * 109.47379 * 293.95964 * 12 3 2 14 14 H 1.08999 * 109.47204 * 54.99780 * 13 12 3 15 15 C 1.52998 * 109.47086 * 294.99782 * 13 12 3 16 16 C 1.53005 * 109.47064 * 174.99941 * 13 12 3 17 17 C 1.50700 * 109.47103 * 185.00190 * 16 13 12 18 18 H 1.08001 * 120.00023 * 359.97438 * 17 16 13 19 19 C 1.37877 * 120.00069 * 179.97438 * 17 16 13 20 20 N 1.31518 * 119.99372 * 359.97438 * 19 17 16 21 21 Si 1.86790 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47431 * 90.00200 * 21 19 17 23 23 H 1.48506 * 109.47105 * 210.00152 * 21 19 17 24 24 H 1.48504 * 109.47537 * 329.99727 * 21 19 17 25 25 H 1.08999 * 109.47604 * 61.75165 * 1 2 3 26 26 H 1.08998 * 109.47377 * 181.75537 * 1 2 3 27 27 H 1.09004 * 109.47023 * 301.75442 * 1 2 3 28 28 H 1.09004 * 109.46701 * 240.00215 * 2 1 3 29 29 H 1.08995 * 109.46758 * 120.00691 * 2 1 3 30 30 H 1.09001 * 109.46944 * 191.74932 * 4 3 2 31 31 H 1.08996 * 109.47045 * 311.74321 * 4 3 2 32 32 H 1.07995 * 120.00577 * 0.02562 * 6 5 4 33 33 H 1.07999 * 120.00069 * 180.27811 * 7 6 5 34 34 H 1.08001 * 120.00285 * 179.72509 * 8 7 6 35 35 H 1.08001 * 119.99978 * 180.02562 * 9 8 7 36 36 H 1.09003 * 109.46985 * 90.00453 * 11 10 5 37 37 H 1.09000 * 109.47031 * 210.00386 * 11 10 5 38 38 H 1.09001 * 109.47159 * 330.00114 * 11 10 5 39 39 H 1.09002 * 109.46424 * 53.96256 * 12 3 2 40 40 H 1.09000 * 109.46762 * 173.95116 * 12 3 2 41 41 H 1.08999 * 109.47082 * 180.02562 * 15 13 12 42 42 H 1.08999 * 109.47097 * 300.00063 * 15 13 12 43 43 H 1.08994 * 109.47453 * 60.00162 * 15 13 12 44 44 H 1.08998 * 109.46819 * 305.00054 * 16 13 12 45 45 H 1.08998 * 109.47039 * 64.99643 * 16 13 12 46 46 H 0.97005 * 119.99399 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6477 2.0748 1.2424 5 6 2.4709 1.5341 2.3830 6 6 1.8995 0.6709 3.2995 7 6 2.6559 0.1708 4.3426 8 6 3.9808 0.5428 4.4761 9 6 4.5505 1.4099 3.5630 10 6 3.7954 1.9056 2.5163 11 6 4.4166 2.8510 1.5206 12 6 1.5293 2.1167 -1.1757 13 6 2.1403 1.5146 -2.4425 14 1 1.9278 0.4461 -2.4759 15 6 3.6545 1.7334 -2.4321 16 6 1.5353 2.1937 -3.6729 17 6 2.0442 1.5185 -4.9204 18 1 2.7308 0.6884 -4.8434 19 6 1.6333 1.9605 -6.1601 20 7 0.7968 2.9711 -6.2537 21 14 2.2646 1.1241 -7.7063 22 1 1.3520 0.0123 -8.0756 23 1 2.3180 2.1099 -8.8157 24 1 3.6258 0.5852 -7.4572 25 1 -0.3634 0.4864 -0.9052 26 1 -0.3634 -1.0271 0.0315 27 1 -0.3633 0.5409 0.8739 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.8339 3.1433 1.1344 31 1 0.5900 1.9093 1.4472 32 1 0.8634 0.3838 3.1978 33 1 2.2109 -0.5070 5.0560 34 1 4.5707 0.1555 5.2938 35 1 5.5856 1.7002 3.6670 36 1 4.2839 3.8775 1.8625 37 1 5.4807 2.6336 1.4280 38 1 3.9346 2.7257 0.5510 39 1 0.4431 2.0401 -1.2242 40 1 1.8164 3.1653 -1.0966 41 1 4.0898 1.3049 -3.3349 42 1 3.8670 2.8020 -2.3987 43 1 4.0856 1.2497 -1.5556 44 1 0.4489 2.1144 -3.6343 45 1 1.8226 3.2451 -3.6857 46 1 0.5080 3.2823 -7.1259 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602441858.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:44 Heat of formation + Delta-G solvation = -7.306566 kcal Electronic energy + Delta-G solvation = -21776.971968 eV Core-core repulsion = 18858.014457 eV Total energy + Delta-G solvation = -2918.957511 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.75346 -39.09749 -36.30809 -34.18263 -33.68016 -32.42243 -30.77890 -28.93359 -27.92301 -27.18063 -26.10312 -24.88227 -23.04648 -22.37878 -20.95354 -20.05775 -18.47300 -17.16333 -17.05586 -16.92034 -16.37238 -15.90465 -15.84282 -15.32892 -14.82367 -14.55943 -14.32663 -14.19165 -13.89908 -13.71402 -13.44426 -13.29496 -13.15410 -12.93132 -12.86813 -12.76114 -12.67243 -12.49800 -12.42179 -12.17417 -11.97648 -11.84779 -11.70270 -11.61115 -11.24310 -11.01736 -10.85048 -10.51152 -9.64511 -9.39162 -9.06609 -8.16086 -6.24622 0.52157 0.58630 1.40383 1.41104 1.52217 2.42787 2.81475 3.17433 3.26869 3.90332 3.99789 4.06619 4.17563 4.25083 4.28610 4.33563 4.39844 4.49493 4.54104 4.58449 4.61397 4.67402 4.81644 4.87087 4.88892 4.92468 4.97229 4.99908 5.09408 5.12264 5.18272 5.26596 5.31077 5.37288 5.49077 5.51987 5.55571 5.59400 5.66893 5.70009 5.84234 5.89139 5.92479 6.15658 6.23599 6.29219 6.35634 6.91455 7.43435 8.95897 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.030744 B = 0.003703 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.520974 B = 7560.510110 C = 7910.522927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.052 3.948 3 N -0.522 5.522 4 C 0.090 3.910 5 C -0.086 4.086 6 C -0.119 4.119 7 C -0.135 4.135 8 C -0.124 4.124 9 C -0.135 4.135 10 C -0.074 4.074 11 C -0.121 4.121 12 C 0.069 3.931 13 C -0.068 4.068 14 H 0.051 0.949 15 C -0.111 4.111 16 C 0.035 3.965 17 C -0.526 4.526 18 H 0.059 0.941 19 C -0.002 4.002 20 N -0.935 5.935 21 Si 0.958 3.042 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.264 1.264 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.126 0.874 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.132 0.868 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.028 0.972 40 H 0.065 0.935 41 H 0.033 0.967 42 H 0.037 0.963 43 H 0.064 0.936 44 H -0.016 1.016 45 H -0.010 1.010 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.321 -4.521 22.027 22.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.076 4.076 3 N -0.245 5.245 4 C -0.037 4.037 5 C -0.086 4.086 6 C -0.138 4.138 7 C -0.153 4.153 8 C -0.142 4.142 9 C -0.153 4.153 10 C -0.074 4.074 11 C -0.177 4.177 12 C -0.059 4.059 13 C -0.087 4.087 14 H 0.070 0.930 15 C -0.168 4.168 16 C -0.003 4.003 17 C -0.565 4.565 18 H 0.077 0.923 19 C -0.199 4.199 20 N -0.576 5.576 21 Si 0.783 3.217 22 H -0.200 1.200 23 H -0.209 1.209 24 H -0.188 1.188 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.144 0.856 33 H 0.156 0.844 34 H 0.157 0.843 35 H 0.150 0.850 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.046 0.954 40 H 0.084 0.916 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.083 0.917 44 H 0.002 0.998 45 H 0.008 0.992 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.754 -4.416 21.870 22.812 hybrid contribution -0.964 -0.051 -1.205 1.543 sum 3.790 -4.468 20.665 21.480 Atomic orbital electron populations 1.22344 0.97946 1.02736 1.01479 1.22109 0.93148 0.90103 1.02269 1.62186 1.59176 1.02269 1.00875 1.21047 0.96653 0.98224 0.87793 1.19688 0.94319 0.98552 0.96069 1.21218 1.00323 0.97182 0.95062 1.21342 0.94626 1.00768 0.98578 1.21403 0.95596 0.97742 0.99463 1.21286 1.00433 0.98621 0.94988 1.19942 0.93486 0.97919 0.96062 1.20886 1.00750 0.97523 0.98562 1.22100 0.96707 0.97365 0.89727 1.20975 0.96171 0.98720 0.92860 0.93031 1.21463 0.95057 1.00144 1.00162 1.18993 0.93918 0.94582 0.92779 1.21630 1.26705 1.16055 0.92061 0.92322 1.25919 0.95464 0.95794 1.02686 1.70103 1.34784 1.27747 1.24966 0.85546 0.79124 0.78215 0.78776 1.19976 1.20933 1.18810 0.93906 0.91168 0.91789 0.91708 0.90256 0.90382 0.93248 0.85613 0.84376 0.84251 0.85005 0.91202 0.91455 0.90684 0.95367 0.91612 0.94748 0.94410 0.91744 0.99765 0.99188 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.64 9.25 71.98 0.67 -3.97 16 2 C 0.05 1.38 5.69 86.30 0.49 1.87 16 3 N -0.52 -14.61 3.12 -900.83 -2.81 -17.42 16 4 C 0.09 2.18 4.13 85.56 0.35 2.53 16 5 C -0.09 -1.96 4.67 -19.87 -0.09 -2.06 16 6 C -0.12 -2.40 9.02 22.27 0.20 -2.20 16 7 C -0.14 -2.39 10.05 22.27 0.22 -2.16 16 8 C -0.12 -2.16 10.05 22.27 0.22 -1.94 16 9 C -0.14 -2.67 9.70 22.27 0.22 -2.45 16 10 C -0.07 -1.67 5.88 -19.87 -0.12 -1.79 16 11 C -0.12 -2.67 9.32 71.24 0.66 -2.00 16 12 C 0.07 2.33 4.08 86.30 0.35 2.68 16 13 C -0.07 -2.80 2.26 -10.80 -0.02 -2.83 16 14 H 0.05 2.16 6.35 -2.39 -0.02 2.14 16 15 C -0.11 -4.26 8.89 71.98 0.64 -3.62 16 16 C 0.03 1.84 4.45 29.85 0.13 1.97 16 17 C -0.53 -29.97 8.41 25.60 0.22 -29.75 16 18 H 0.06 3.24 7.06 -2.91 -0.02 3.21 16 19 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 20 N -0.94 -57.45 13.29 21.45 0.28 -57.16 16 21 Si 0.96 44.85 29.54 68.60 2.03 46.87 16 22 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 24 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 25 H 0.04 1.27 6.35 -2.39 -0.02 1.25 16 26 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.06 1.42 6.23 -2.38 -0.01 1.40 16 28 H 0.06 1.94 6.42 -2.38 -0.02 1.93 16 29 H 0.08 1.96 6.84 -2.39 -0.02 1.94 16 30 H 0.08 1.90 7.20 -2.39 -0.02 1.89 16 31 H 0.05 1.14 5.76 -2.39 -0.01 1.12 16 32 H 0.13 2.20 8.00 -2.91 -0.02 2.18 16 33 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 34 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 35 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 1.36 8.09 -2.39 -0.02 1.34 16 38 H 0.07 1.94 6.16 -2.39 -0.01 1.93 16 39 H 0.03 1.00 6.01 -2.39 -0.01 0.98 16 40 H 0.07 2.24 7.86 -2.39 -0.02 2.22 16 41 H 0.03 1.42 6.95 -2.39 -0.02 1.40 16 42 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.06 2.19 7.75 -2.39 -0.02 2.17 16 44 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 45 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 46 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 Total: -1.00 -63.48 354.77 5.03 -58.45 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.93 Total: 14.61 kcal Atomic # 6 Polarization: -49.95 SS G_CDS: 4.61 Total: -45.34 kcal Atomic # 7 Polarization: -72.06 SS G_CDS: -2.53 Total: -74.58 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -63.48 5.03 -58.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602441858.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.144 kcal (2) G-P(sol) polarization free energy of solvation -63.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds