Wall clock time and date at job start Mon Mar 30 2020 01:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47402 * 2 1 4 4 C 1.53005 * 109.46819 * 120.00231 * 2 1 3 5 5 H 1.08994 * 109.47424 * 60.00161 * 4 2 1 6 6 N 1.46907 * 109.46965 * 179.97438 * 4 2 1 7 7 C 1.46895 * 111.00034 * 275.00332 * 6 4 2 8 8 C 1.53006 * 109.46799 * 179.97438 * 7 6 4 9 9 H 1.08996 * 109.46884 * 55.00215 * 8 7 6 10 10 C 1.52997 * 109.47127 * 294.99463 * 8 7 6 11 11 C 1.52999 * 109.46623 * 174.99527 * 8 7 6 12 12 C 1.50707 * 109.47009 * 184.99986 * 11 8 7 13 13 H 1.07996 * 119.99521 * 359.97438 * 12 11 8 14 14 C 1.37873 * 120.00339 * 180.02562 * 12 11 8 15 15 N 1.31521 * 120.00003 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00392 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.46839 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47356 * 119.99073 * 16 14 12 19 19 H 1.48497 * 109.47175 * 239.99531 * 16 14 12 20 20 C 1.50696 * 109.47344 * 299.99579 * 4 2 1 21 21 C 1.38237 * 120.00057 * 279.73329 * 20 4 2 22 22 C 1.38238 * 120.00249 * 179.78772 * 21 20 4 23 23 C 1.38233 * 119.99462 * 0.43562 * 22 21 20 24 24 C 1.38233 * 120.00405 * 359.81784 * 23 22 21 25 25 C 1.38229 * 120.00103 * 100.00082 * 20 4 2 26 26 H 1.08997 * 109.47125 * 59.99451 * 1 2 3 27 27 H 1.09003 * 109.47400 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46977 * 299.99751 * 1 2 3 29 29 H 1.08997 * 109.47059 * 239.99763 * 2 1 3 30 30 H 1.09002 * 109.47129 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46977 * 300.00076 * 3 2 1 32 32 H 1.09001 * 109.46851 * 60.00172 * 3 2 1 33 33 H 1.00900 * 110.99937 * 151.03915 * 6 4 2 34 34 H 1.09001 * 109.47563 * 59.99604 * 7 6 4 35 35 H 1.09000 * 109.46722 * 299.99217 * 7 6 4 36 36 H 1.09002 * 109.47153 * 180.02562 * 10 8 7 37 37 H 1.09001 * 109.46832 * 60.00321 * 10 8 7 38 38 H 1.09004 * 109.47261 * 300.00303 * 10 8 7 39 39 H 1.08994 * 109.47465 * 305.00017 * 11 8 7 40 40 H 1.08998 * 109.47565 * 65.00449 * 11 8 7 41 41 H 0.96995 * 120.00234 * 180.02562 * 15 14 12 42 42 H 1.08002 * 120.00015 * 359.97438 * 21 20 4 43 43 H 1.07994 * 120.00195 * 180.27220 * 22 21 20 44 44 H 1.08000 * 119.99926 * 179.83819 * 23 22 21 45 45 H 1.08002 * 120.00480 * 180.02562 * 24 23 22 46 46 H 1.08004 * 120.00007 * 359.97438 * 25 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6766 -1.7490 1.2493 6 7 3.5090 -0.7219 1.2490 7 6 4.0348 -1.8455 0.4624 8 6 5.5644 -1.8122 0.4850 9 1 5.9123 -1.8043 1.5179 10 6 6.0577 -0.5523 -0.2292 11 6 6.1119 -3.0502 -0.2281 12 6 7.6132 -3.0810 -0.0995 13 1 8.1254 -2.2959 0.4367 14 6 8.3328 -4.1109 -0.6674 15 7 7.7090 -5.0667 -1.3209 16 14 10.1935 -4.1495 -0.5075 17 1 10.6481 -2.9684 0.2695 18 1 10.6044 -5.3921 0.1942 19 1 10.8072 -4.1183 -1.8593 20 6 1.5377 -0.0110 2.4797 21 6 2.1754 1.1310 2.9273 22 6 1.7120 1.7851 4.0535 23 6 0.6164 1.2922 4.7373 24 6 -0.0181 0.1474 4.2928 25 6 0.4427 -0.5043 3.1641 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 3.8707 -0.7390 2.1908 34 1 3.6852 -1.7638 -0.5668 35 1 3.6852 -2.7845 0.8915 36 1 7.1473 -0.5288 -0.2134 37 1 5.6675 0.3296 0.2789 38 1 5.7096 -0.5603 -1.2621 39 1 5.6900 -3.9470 0.2253 40 1 5.8384 -3.0129 -1.2825 41 1 8.2152 -5.7914 -1.7201 42 1 3.0338 1.5138 2.3953 43 1 2.2075 2.6797 4.4006 44 1 0.2560 1.8017 5.6187 45 1 -0.8743 -0.2375 4.8268 46 1 -0.0532 -1.3987 2.8167 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602502752.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:05 Heat of formation + Delta-G solvation = -19.239622 kcal Electronic energy + Delta-G solvation = -21512.330213 eV Core-core repulsion = 18592.855246 eV Total energy + Delta-G solvation = -2919.474967 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.83695 -38.44543 -36.89874 -34.76854 -33.24668 -31.84342 -31.48985 -28.86419 -27.94887 -27.25053 -25.73801 -24.16231 -23.10871 -22.79602 -20.76330 -20.21919 -18.48724 -17.60591 -16.71613 -16.52863 -16.42897 -16.07305 -15.72467 -15.37115 -14.96077 -14.70178 -14.39370 -14.27812 -14.12455 -13.51277 -13.42000 -13.32762 -13.15997 -12.96310 -12.78570 -12.74961 -12.57538 -12.37384 -12.18643 -12.00120 -11.83652 -11.77657 -11.68822 -11.46562 -11.24674 -11.04723 -10.87880 -10.53810 -9.70819 -9.54092 -9.29548 -8.17347 -6.26355 0.50247 0.58197 1.39847 1.40314 1.53410 2.42152 2.93711 3.16155 3.22587 3.70606 4.06505 4.11979 4.17810 4.24123 4.24908 4.35949 4.37541 4.44774 4.55557 4.57766 4.71614 4.79503 4.86231 4.89422 4.94293 4.95446 5.04930 5.10954 5.12930 5.16528 5.25273 5.30165 5.31838 5.48103 5.50971 5.52611 5.57013 5.61081 5.64080 5.70414 5.73230 5.83218 5.89782 6.13310 6.20183 6.32439 6.51047 6.90017 7.42002 8.94990 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.026054 B = 0.003498 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.443125 B = 8001.741400 C = 8306.191651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 C -0.135 4.135 4 C 0.132 3.868 5 H 0.039 0.961 6 N -0.669 5.669 7 C 0.080 3.920 8 C -0.072 4.072 9 H 0.052 0.948 10 C -0.110 4.110 11 C 0.032 3.968 12 C -0.527 4.527 13 H 0.061 0.939 14 C -0.003 4.003 15 N -0.936 5.936 16 Si 0.961 3.039 17 H -0.261 1.261 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.087 4.087 21 C -0.108 4.108 22 C -0.131 4.131 23 C -0.127 4.127 24 C -0.128 4.128 25 C -0.124 4.124 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.342 0.658 34 H 0.061 0.939 35 H 0.013 0.987 36 H 0.035 0.965 37 H 0.069 0.931 38 H 0.033 0.967 39 H -0.016 1.016 40 H -0.011 1.011 41 H 0.261 0.739 42 H 0.129 0.871 43 H 0.136 0.864 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.843 14.344 9.679 24.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.098 4.098 3 C -0.193 4.193 4 C 0.022 3.978 5 H 0.057 0.943 6 N -0.299 5.299 7 C -0.049 4.049 8 C -0.091 4.091 9 H 0.070 0.930 10 C -0.168 4.168 11 C -0.005 4.005 12 C -0.565 4.565 13 H 0.079 0.921 14 C -0.200 4.200 15 N -0.577 5.577 16 Si 0.786 3.214 17 H -0.185 1.185 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.088 4.088 21 C -0.126 4.126 22 C -0.149 4.149 23 C -0.145 4.145 24 C -0.146 4.146 25 C -0.143 4.143 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.160 0.840 34 H 0.080 0.920 35 H 0.032 0.968 36 H 0.055 0.945 37 H 0.087 0.913 38 H 0.053 0.947 39 H 0.002 0.998 40 H 0.008 0.992 41 H 0.070 0.930 42 H 0.147 0.853 43 H 0.154 0.846 44 H 0.157 0.843 45 H 0.156 0.844 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.760 14.643 9.064 24.031 hybrid contribution 0.826 -1.512 0.216 1.736 sum -15.934 13.131 9.281 22.638 Atomic orbital electron populations 1.21818 0.94373 1.01649 1.02103 1.20995 0.95592 0.97209 0.96007 1.21790 1.01605 0.94774 1.01090 1.20483 0.87537 0.96586 0.93156 0.94311 1.60550 1.06213 1.44801 1.18374 1.21866 0.94683 0.90544 0.97828 1.20988 0.93168 0.96017 0.98905 0.92961 1.21463 0.99589 0.96788 0.98931 1.19013 0.94899 0.92513 0.94088 1.21671 0.93389 1.08012 1.33401 0.92079 1.25958 1.03638 0.95363 0.95088 1.70112 1.37400 1.12925 1.37286 0.85455 0.79711 0.78288 0.77953 1.18521 1.20563 1.20554 1.19832 0.96585 0.96501 0.95851 1.21211 1.00031 0.94878 0.96488 1.21435 0.97265 1.00645 0.95514 1.21445 0.96077 0.96581 1.00425 1.21357 1.00650 0.96072 0.96526 1.21194 0.96693 1.00368 0.96031 0.92074 0.92901 0.92361 0.92573 0.92328 0.93349 0.92236 0.83984 0.92042 0.96830 0.94545 0.91250 0.94739 0.99786 0.99248 0.92979 0.85295 0.84590 0.84250 0.84418 0.85943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.79 71.98 0.63 -2.12 16 2 C -0.08 -1.82 2.83 -10.79 -0.03 -1.85 16 3 C -0.14 -2.98 7.97 71.98 0.57 -2.41 16 4 C 0.13 3.20 2.12 44.17 0.09 3.29 16 5 H 0.04 1.02 7.66 -2.39 -0.02 1.00 16 6 N -0.67 -18.42 4.38 -495.44 -2.17 -20.59 16 7 C 0.08 2.77 4.87 86.31 0.42 3.19 16 8 C -0.07 -2.95 2.48 -10.79 -0.03 -2.98 16 9 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 10 C -0.11 -4.20 8.89 71.98 0.64 -3.56 16 11 C 0.03 1.73 4.45 29.85 0.13 1.86 16 12 C -0.53 -30.08 8.41 25.60 0.22 -29.87 16 13 H 0.06 3.36 7.06 -2.91 -0.02 3.34 16 14 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 15 N -0.94 -57.85 13.29 21.45 0.28 -57.56 16 16 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 17 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 C -0.09 -1.88 3.55 -19.87 -0.07 -1.95 16 21 C -0.11 -2.21 6.79 22.27 0.15 -2.06 16 22 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 23 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 24 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 25 C -0.12 -2.44 8.71 22.27 0.19 -2.24 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 1.11 6.64 -2.39 -0.02 1.10 16 29 H 0.06 1.47 7.45 -2.39 -0.02 1.45 16 30 H 0.06 1.44 7.60 -2.39 -0.02 1.43 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 1.24 5.62 -2.39 -0.01 1.23 16 33 H 0.34 9.28 7.98 -89.69 -0.72 8.57 16 34 H 0.06 2.20 7.44 -2.39 -0.02 2.18 16 35 H 0.01 0.49 8.05 -2.39 -0.02 0.47 16 36 H 0.04 1.48 6.95 -2.39 -0.02 1.47 16 37 H 0.07 2.26 7.75 -2.39 -0.02 2.24 16 38 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 39 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 40 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 41 H 0.26 15.17 8.31 -92.71 -0.77 14.39 16 42 H 0.13 2.73 6.91 -2.91 -0.02 2.71 16 43 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 44 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 45 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 46 H 0.12 2.20 8.04 -2.91 -0.02 2.17 16 Total: -1.00 -63.32 358.60 4.41 -58.91 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.21 Total: 18.55 kcal Atomic # 6 Polarization: -50.31 SS G_CDS: 4.06 Total: -46.25 kcal Atomic # 7 Polarization: -76.27 SS G_CDS: -1.88 Total: -78.16 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -63.32 4.41 -58.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602502752.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.672 kcal (2) G-P(sol) polarization free energy of solvation -63.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds