Wall clock time and date at job start Mon Mar 30 2020 01:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47333 * 2 1 4 4 C 1.52994 * 109.47295 * 120.00426 * 2 1 3 5 5 H 1.09004 * 109.47386 * 179.42840 * 4 2 1 6 6 N 1.46899 * 109.47342 * 59.43053 * 4 2 1 7 7 C 1.46900 * 111.00214 * 85.37812 * 6 4 2 8 8 C 1.52998 * 109.47106 * 175.56153 * 7 6 4 9 9 H 1.09002 * 109.47347 * 305.00011 * 8 7 6 10 10 C 1.52995 * 109.47247 * 64.99797 * 8 7 6 11 11 C 1.53000 * 109.47229 * 185.00039 * 8 7 6 12 12 C 1.50696 * 109.47312 * 174.99793 * 11 8 7 13 13 H 1.07997 * 119.99910 * 0.02562 * 12 11 8 14 14 C 1.37875 * 119.99662 * 179.97438 * 12 11 8 15 15 N 1.31505 * 120.00646 * 0.02562 * 14 12 11 16 16 Si 1.86812 * 119.99627 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.46799 * 90.00179 * 16 14 12 18 18 H 1.48490 * 109.46895 * 210.00113 * 16 14 12 19 19 H 1.48495 * 109.47006 * 330.00333 * 16 14 12 20 20 C 1.50707 * 109.47072 * 299.42724 * 4 2 1 21 21 C 1.38230 * 119.99430 * 79.72864 * 20 4 2 22 22 C 1.38241 * 119.99727 * 179.81048 * 21 20 4 23 23 C 1.38242 * 119.99741 * 0.39663 * 22 21 20 24 24 C 1.38236 * 119.99905 * 359.85606 * 23 22 21 25 25 C 1.38231 * 120.00151 * 359.95626 * 24 23 22 26 26 H 1.09000 * 109.46936 * 59.99475 * 1 2 3 27 27 H 1.08995 * 109.46625 * 299.99839 * 1 2 3 28 28 H 1.08997 * 109.46849 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47023 * 240.00313 * 2 1 3 30 30 H 1.09004 * 109.46835 * 54.21712 * 3 2 1 31 31 H 1.08999 * 109.47674 * 174.21655 * 3 2 1 32 32 H 1.09005 * 109.47231 * 294.22147 * 3 2 1 33 33 H 1.00905 * 110.99822 * 209.33501 * 6 4 2 34 34 H 1.09001 * 109.46597 * 295.55848 * 7 6 4 35 35 H 1.08998 * 109.47060 * 55.55902 * 7 6 4 36 36 H 1.09004 * 109.47625 * 300.00113 * 10 8 7 37 37 H 1.09000 * 109.47401 * 60.00262 * 10 8 7 38 38 H 1.08994 * 109.47456 * 179.97438 * 10 8 7 39 39 H 1.09006 * 109.46780 * 295.00057 * 11 8 7 40 40 H 1.09001 * 109.46939 * 54.99548 * 11 8 7 41 41 H 0.96997 * 120.00725 * 179.97438 * 15 14 12 42 42 H 1.07997 * 120.00580 * 359.97438 * 21 20 4 43 43 H 1.08000 * 120.00254 * 180.23189 * 22 21 20 44 44 H 1.07999 * 119.99953 * 179.83689 * 23 22 21 45 45 H 1.07998 * 119.99935 * 179.97438 * 24 23 22 46 46 H 1.08000 * 120.00119 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 3.1301 -0.7302 1.2440 6 7 1.5392 -2.1023 1.2560 7 6 2.4170 -2.9845 0.4755 8 6 1.9267 -4.4287 0.5967 9 1 1.8601 -4.7027 1.6497 10 6 0.5464 -4.5548 -0.0511 11 6 2.9100 -5.3624 -0.1120 12 6 2.4939 -6.7934 0.1114 13 1 1.6157 -7.0149 0.6997 14 6 3.2339 -7.8199 -0.4361 15 7 4.3029 -7.5503 -1.1529 16 14 2.7177 -9.5939 -0.1597 17 1 1.7933 -10.0149 -1.2429 18 1 3.9195 -10.4660 -0.1678 19 1 2.0300 -9.7108 1.1512 20 6 1.5493 -0.0028 2.4797 21 6 0.2570 -0.2029 2.9274 22 6 -0.1920 0.4532 4.0584 23 6 0.6490 1.3155 4.7368 24 6 1.9397 1.5195 4.2859 25 6 2.3898 0.8605 3.1572 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.5947 1.9853 0.8337 31 1 3.1252 1.4443 0.1036 32 1 1.7637 1.9256 -0.9372 33 1 1.4307 -2.4428 2.1996 34 1 2.3988 -2.6813 -0.5713 35 1 3.4356 -2.9134 0.8568 36 1 -0.1542 -3.8897 0.4538 37 1 0.6128 -4.2809 -1.1041 38 1 0.1973 -5.5838 0.0348 39 1 2.9100 -5.1466 -1.1805 40 1 3.9114 -5.2081 0.2898 41 1 4.8237 -8.2725 -1.5378 42 1 -0.4012 -0.8737 2.3953 43 1 -1.2005 0.2940 4.4105 44 1 0.2974 1.8301 5.6189 45 1 2.5966 2.1935 4.8157 46 1 3.3984 1.0196 2.8052 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602502759.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:10 Heat of formation + Delta-G solvation = -5.099735 kcal Electronic energy + Delta-G solvation = -21504.835719 eV Core-core repulsion = 18585.973904 eV Total energy + Delta-G solvation = -2918.861815 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.95698 -37.30109 -35.48212 -32.99643 -31.73831 -31.06460 -30.49557 -27.06849 -26.92954 -25.94794 -24.27717 -22.73658 -22.03512 -21.92015 -19.29387 -19.10965 -16.77041 -16.29902 -15.58853 -15.52871 -15.16544 -14.62491 -14.47022 -14.03553 -13.91402 -13.59192 -13.35492 -12.96680 -12.56667 -12.51088 -12.20981 -12.06623 -11.95613 -11.55843 -11.43878 -11.38920 -11.05651 -10.98027 -10.82583 -10.79594 -10.67523 -10.35056 -10.23309 -10.17542 -9.67783 -9.14626 -8.95816 -8.93434 -8.71299 -8.31437 -8.08716 -5.96096 -3.97166 1.28714 1.35197 3.34054 3.40302 3.43583 3.72482 4.35332 4.50664 4.62602 4.86668 4.92651 5.03764 5.09093 5.16542 5.35505 5.39745 5.45529 5.47809 5.62761 5.70810 5.74155 5.80515 5.89189 5.93820 5.96921 6.01685 6.08603 6.17416 6.20513 6.36901 6.42887 6.45022 6.45996 6.53131 6.55626 6.63341 6.70569 6.94784 7.04668 7.19765 7.22542 7.40757 7.67924 7.72439 7.87464 8.04256 8.48328 9.09305 9.66200 11.15446 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.025558 B = 0.003512 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.270503 B = 7970.074981 C = 8294.382422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.078 4.078 3 C -0.147 4.147 4 C 0.128 3.872 5 H 0.048 0.952 6 N -0.678 5.678 7 C 0.064 3.936 8 C -0.083 4.083 9 H 0.052 0.948 10 C -0.122 4.122 11 C 0.028 3.972 12 C -0.512 4.512 13 H 0.056 0.944 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.889 3.111 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.077 4.077 21 C -0.099 4.099 22 C -0.126 4.126 23 C -0.126 4.126 24 C -0.125 4.125 25 C -0.114 4.114 26 H 0.041 0.959 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.339 0.661 34 H 0.067 0.933 35 H 0.024 0.976 36 H 0.041 0.959 37 H 0.039 0.961 38 H 0.052 0.948 39 H 0.016 0.984 40 H 0.012 0.988 41 H 0.259 0.741 42 H 0.134 0.866 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.117 0.883 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.669 19.841 7.775 22.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.098 4.098 3 C -0.205 4.205 4 C 0.018 3.982 5 H 0.066 0.934 6 N -0.309 5.309 7 C -0.064 4.064 8 C -0.102 4.102 9 H 0.071 0.929 10 C -0.179 4.179 11 C -0.010 4.010 12 C -0.550 4.550 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.717 3.283 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.078 4.078 21 C -0.117 4.117 22 C -0.144 4.144 23 C -0.144 4.144 24 C -0.143 4.143 25 C -0.133 4.133 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.158 0.842 34 H 0.085 0.915 35 H 0.042 0.958 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.034 0.966 40 H 0.030 0.970 41 H 0.069 0.931 42 H 0.152 0.848 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.960 19.847 7.148 22.214 hybrid contribution 0.718 -1.078 0.687 1.466 sum -6.242 18.769 7.836 21.275 Atomic orbital electron populations 1.21867 0.94751 1.02797 1.00523 1.21003 0.96882 0.94804 0.97066 1.21874 1.00619 0.96492 1.01525 1.20532 0.96643 0.89059 0.91922 0.93395 1.60638 1.51073 1.00471 1.18703 1.22205 0.92958 0.93475 0.97773 1.21208 0.97018 0.92103 0.99842 0.92923 1.21580 0.96319 1.00676 0.99331 1.19113 0.93319 0.93108 0.95441 1.21238 1.10814 0.91218 1.31769 0.92591 1.25017 0.95083 0.99041 0.95402 1.69960 1.16857 1.32082 1.34805 0.86638 0.77984 0.85087 0.78565 1.20719 1.21337 1.19918 1.19961 0.94326 0.97421 0.96075 1.21195 0.95547 0.99173 0.95771 1.21188 0.99758 0.97480 0.95937 1.21116 0.94268 0.99058 0.99976 1.21066 0.96109 1.00210 0.96901 1.21047 0.99500 0.97121 0.95621 0.94001 0.92757 0.90957 0.90953 0.92648 0.93109 0.92881 0.84219 0.91490 0.95792 0.93983 0.94155 0.92865 0.96580 0.96990 0.93117 0.84794 0.86289 0.86548 0.86446 0.86445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 7.97 37.16 0.30 -1.34 16 2 C -0.08 -0.92 2.84 -90.62 -0.26 -1.18 16 3 C -0.15 -1.51 8.60 37.16 0.32 -1.19 16 4 C 0.13 1.59 2.13 -68.87 -0.15 1.44 16 5 H 0.05 0.63 7.58 -51.93 -0.39 0.24 16 6 N -0.68 -9.47 4.40 -107.95 -0.48 -9.94 16 7 C 0.06 1.09 4.92 -3.82 -0.02 1.08 16 8 C -0.08 -1.67 2.44 -90.62 -0.22 -1.90 16 9 H 0.05 1.08 8.12 -51.93 -0.42 0.66 16 10 C -0.12 -2.33 8.89 37.15 0.33 -2.00 16 11 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 12 C -0.51 -14.39 8.41 -34.44 -0.29 -14.68 16 13 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 16 Si 0.89 21.81 29.54 -169.99 -5.02 16.78 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 C -0.08 -0.88 3.57 -104.62 -0.37 -1.26 16 21 C -0.10 -1.09 6.80 -39.58 -0.27 -1.36 16 22 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 23 C -0.13 -1.19 10.05 -39.58 -0.40 -1.59 16 24 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 25 C -0.11 -1.22 8.87 -39.58 -0.35 -1.57 16 26 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.60 5.58 -51.93 -0.29 0.31 16 28 H 0.07 0.92 7.59 -51.93 -0.39 0.53 16 29 H 0.07 0.94 7.58 -51.93 -0.39 0.55 16 30 H 0.05 0.57 7.02 -51.93 -0.36 0.21 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.34 4.76 7.91 -39.29 -0.31 4.45 16 34 H 0.07 1.17 7.58 -51.93 -0.39 0.78 16 35 H 0.02 0.42 7.95 -51.93 -0.41 0.01 16 36 H 0.04 0.70 7.75 -51.93 -0.40 0.30 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 1.10 6.95 -51.93 -0.36 0.73 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.13 1.50 6.86 -52.49 -0.36 1.14 16 43 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 46 H 0.12 1.13 8.04 -52.49 -0.42 0.71 16 LS Contribution 358.91 15.07 5.41 5.41 Total: -1.00 -29.30 358.91 -9.98 -39.28 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -8.23 Total: 1.58 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: -2.40 Total: -26.71 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.26 Total: -36.34 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.30 -9.98 -39.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602502759.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.179 kcal (2) G-P(sol) polarization free energy of solvation -29.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds