Wall clock time and date at job start Mon Mar 30 2020 01:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47333 * 2 1 4 4 C 1.52994 * 109.47295 * 120.00426 * 2 1 3 5 5 H 1.09004 * 109.47386 * 179.42840 * 4 2 1 6 6 N 1.46899 * 109.47342 * 59.43053 * 4 2 1 7 7 C 1.46900 * 111.00214 * 85.37812 * 6 4 2 8 8 C 1.52998 * 109.47106 * 175.56153 * 7 6 4 9 9 H 1.09002 * 109.47347 * 305.00011 * 8 7 6 10 10 C 1.52995 * 109.47247 * 64.99797 * 8 7 6 11 11 C 1.53000 * 109.47229 * 185.00039 * 8 7 6 12 12 C 1.50696 * 109.47312 * 174.99793 * 11 8 7 13 13 H 1.07997 * 119.99910 * 0.02562 * 12 11 8 14 14 C 1.37875 * 119.99662 * 179.97438 * 12 11 8 15 15 N 1.31505 * 120.00646 * 0.02562 * 14 12 11 16 16 Si 1.86812 * 119.99627 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.46799 * 90.00179 * 16 14 12 18 18 H 1.48490 * 109.46895 * 210.00113 * 16 14 12 19 19 H 1.48495 * 109.47006 * 330.00333 * 16 14 12 20 20 C 1.50707 * 109.47072 * 299.42724 * 4 2 1 21 21 C 1.38230 * 119.99430 * 79.72864 * 20 4 2 22 22 C 1.38241 * 119.99727 * 179.81048 * 21 20 4 23 23 C 1.38242 * 119.99741 * 0.39663 * 22 21 20 24 24 C 1.38236 * 119.99905 * 359.85606 * 23 22 21 25 25 C 1.38231 * 120.00151 * 359.95626 * 24 23 22 26 26 H 1.09000 * 109.46936 * 59.99475 * 1 2 3 27 27 H 1.08995 * 109.46625 * 299.99839 * 1 2 3 28 28 H 1.08997 * 109.46849 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47023 * 240.00313 * 2 1 3 30 30 H 1.09004 * 109.46835 * 54.21712 * 3 2 1 31 31 H 1.08999 * 109.47674 * 174.21655 * 3 2 1 32 32 H 1.09005 * 109.47231 * 294.22147 * 3 2 1 33 33 H 1.00905 * 110.99822 * 209.33501 * 6 4 2 34 34 H 1.09001 * 109.46597 * 295.55848 * 7 6 4 35 35 H 1.08998 * 109.47060 * 55.55902 * 7 6 4 36 36 H 1.09004 * 109.47625 * 300.00113 * 10 8 7 37 37 H 1.09000 * 109.47401 * 60.00262 * 10 8 7 38 38 H 1.08994 * 109.47456 * 179.97438 * 10 8 7 39 39 H 1.09006 * 109.46780 * 295.00057 * 11 8 7 40 40 H 1.09001 * 109.46939 * 54.99548 * 11 8 7 41 41 H 0.96997 * 120.00725 * 179.97438 * 15 14 12 42 42 H 1.07997 * 120.00580 * 359.97438 * 21 20 4 43 43 H 1.08000 * 120.00254 * 180.23189 * 22 21 20 44 44 H 1.07999 * 119.99953 * 179.83689 * 23 22 21 45 45 H 1.07998 * 119.99935 * 179.97438 * 24 23 22 46 46 H 1.08000 * 120.00119 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 3.1301 -0.7302 1.2440 6 7 1.5392 -2.1023 1.2560 7 6 2.4170 -2.9845 0.4755 8 6 1.9267 -4.4287 0.5967 9 1 1.8601 -4.7027 1.6497 10 6 0.5464 -4.5548 -0.0511 11 6 2.9100 -5.3624 -0.1120 12 6 2.4939 -6.7934 0.1114 13 1 1.6157 -7.0149 0.6997 14 6 3.2339 -7.8199 -0.4361 15 7 4.3029 -7.5503 -1.1529 16 14 2.7177 -9.5939 -0.1597 17 1 1.7933 -10.0149 -1.2429 18 1 3.9195 -10.4660 -0.1678 19 1 2.0300 -9.7108 1.1512 20 6 1.5493 -0.0028 2.4797 21 6 0.2570 -0.2029 2.9274 22 6 -0.1920 0.4532 4.0584 23 6 0.6490 1.3155 4.7368 24 6 1.9397 1.5195 4.2859 25 6 2.3898 0.8605 3.1572 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.5947 1.9853 0.8337 31 1 3.1252 1.4443 0.1036 32 1 1.7637 1.9256 -0.9372 33 1 1.4307 -2.4428 2.1996 34 1 2.3988 -2.6813 -0.5713 35 1 3.4356 -2.9134 0.8568 36 1 -0.1542 -3.8897 0.4538 37 1 0.6128 -4.2809 -1.1041 38 1 0.1973 -5.5838 0.0348 39 1 2.9100 -5.1466 -1.1805 40 1 3.9114 -5.2081 0.2898 41 1 4.8237 -8.2725 -1.5378 42 1 -0.4012 -0.8737 2.3953 43 1 -1.2005 0.2940 4.4105 44 1 0.2974 1.8301 5.6189 45 1 2.5966 2.1935 4.8157 46 1 3.3984 1.0196 2.8052 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602502759.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:09 Heat of formation + Delta-G solvation = -19.128669 kcal Electronic energy + Delta-G solvation = -21505.444059 eV Core-core repulsion = 18585.973904 eV Total energy + Delta-G solvation = -2919.470155 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.83444 -38.44997 -36.90895 -34.77382 -33.23684 -31.84316 -31.48822 -28.86765 -27.95061 -27.25011 -25.74154 -24.16078 -23.11028 -22.79119 -20.77900 -20.22978 -18.48772 -17.60458 -16.71594 -16.51859 -16.42776 -16.06833 -15.73177 -15.37710 -14.96303 -14.69077 -14.37558 -14.27426 -14.12587 -13.54303 -13.41433 -13.33926 -13.15933 -12.96592 -12.76701 -12.74178 -12.60059 -12.36946 -12.18866 -12.01084 -11.83583 -11.78265 -11.68776 -11.46410 -11.25291 -11.05602 -10.88549 -10.53404 -9.70976 -9.54193 -9.30130 -8.17263 -6.26456 0.50285 0.58200 1.40201 1.41252 1.52150 2.42127 2.93741 3.16167 3.22810 3.70488 4.06500 4.11752 4.17670 4.23975 4.24766 4.36053 4.36561 4.44483 4.55112 4.56986 4.71639 4.79797 4.85942 4.89532 4.93553 4.96124 5.03965 5.10785 5.13045 5.16268 5.25222 5.30028 5.31817 5.47436 5.50823 5.52399 5.56269 5.60944 5.64054 5.70330 5.73196 5.82744 5.89375 6.13204 6.20164 6.32151 6.50672 6.89700 7.41894 8.94865 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.025558 B = 0.003512 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.270503 B = 7970.074981 C = 8294.382422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.079 4.079 3 C -0.140 4.140 4 C 0.131 3.869 5 H 0.039 0.961 6 N -0.668 5.668 7 C 0.080 3.920 8 C -0.073 4.073 9 H 0.052 0.948 10 C -0.111 4.111 11 C 0.033 3.967 12 C -0.528 4.528 13 H 0.061 0.939 14 C -0.003 4.003 15 N -0.936 5.936 16 Si 0.961 3.039 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.263 1.263 20 C -0.088 4.088 21 C -0.108 4.108 22 C -0.131 4.131 23 C -0.127 4.127 24 C -0.128 4.128 25 C -0.124 4.124 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.341 0.659 34 H 0.061 0.939 35 H 0.014 0.986 36 H 0.069 0.931 37 H 0.034 0.966 38 H 0.036 0.964 39 H -0.011 1.011 40 H -0.016 1.016 41 H 0.262 0.738 42 H 0.129 0.871 43 H 0.136 0.864 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.050 20.716 9.235 24.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.098 4.098 3 C -0.198 4.198 4 C 0.022 3.978 5 H 0.057 0.943 6 N -0.299 5.299 7 C -0.049 4.049 8 C -0.092 4.092 9 H 0.070 0.930 10 C -0.168 4.168 11 C -0.005 4.005 12 C -0.566 4.566 13 H 0.079 0.921 14 C -0.200 4.200 15 N -0.577 5.577 16 Si 0.786 3.214 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.187 1.187 20 C -0.088 4.088 21 C -0.126 4.126 22 C -0.149 4.149 23 C -0.145 4.145 24 C -0.146 4.146 25 C -0.143 4.143 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.160 0.840 34 H 0.080 0.920 35 H 0.032 0.968 36 H 0.088 0.912 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.008 0.992 40 H 0.002 0.998 41 H 0.070 0.930 42 H 0.147 0.853 43 H 0.154 0.846 44 H 0.158 0.842 45 H 0.156 0.844 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.355 20.737 8.618 23.960 hybrid contribution 1.163 -1.283 0.261 1.751 sum -7.192 19.454 8.879 22.562 Atomic orbital electron populations 1.21795 0.94316 1.02050 1.01112 1.20997 0.97213 0.95601 0.95989 1.21804 1.00706 0.95296 1.02002 1.20508 0.96107 0.88008 0.93182 0.94315 1.60579 1.49961 1.00884 1.18485 1.21875 0.92810 0.92202 0.98021 1.21012 0.96348 0.92858 0.98992 0.92958 1.21468 0.95901 1.00262 0.99199 1.19004 0.93361 0.93929 0.94161 1.21640 1.10917 0.92467 1.31607 0.92071 1.25954 0.95026 1.03945 0.95060 1.70097 1.18110 1.33613 1.35876 0.85509 0.77746 0.79186 0.79002 1.19874 1.20958 1.18720 1.19842 0.94858 0.98181 0.95915 1.21213 0.95339 0.99625 0.96456 1.21441 1.00755 0.97185 0.95476 1.21448 0.94038 0.98596 1.00458 1.21355 0.96662 1.00100 0.96489 1.21192 0.99734 0.97259 0.96104 0.93341 0.92199 0.92321 0.92555 0.92457 0.92898 0.92098 0.83990 0.92046 0.96821 0.91249 0.94697 0.94475 0.99244 0.99797 0.92962 0.85264 0.84573 0.84247 0.84431 0.85971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 7.97 71.98 0.57 -2.40 16 2 C -0.08 -1.81 2.84 -10.79 -0.03 -1.84 16 3 C -0.14 -2.72 8.60 71.98 0.62 -2.10 16 4 C 0.13 3.20 2.13 44.17 0.09 3.29 16 5 H 0.04 1.02 7.58 -2.38 -0.02 1.00 16 6 N -0.67 -18.45 4.40 -495.45 -2.18 -20.63 16 7 C 0.08 2.77 4.92 86.30 0.42 3.20 16 8 C -0.07 -3.00 2.44 -10.80 -0.03 -3.03 16 9 H 0.05 2.15 8.12 -2.39 -0.02 2.13 16 10 C -0.11 -4.21 8.89 71.98 0.64 -3.57 16 11 C 0.03 1.76 4.45 29.85 0.13 1.89 16 12 C -0.53 -30.16 8.41 25.60 0.22 -29.94 16 13 H 0.06 3.36 7.06 -2.91 -0.02 3.34 16 14 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 15 N -0.94 -57.85 13.29 21.45 0.28 -57.56 16 16 Si 0.96 44.85 29.54 68.60 2.03 46.88 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 19 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 20 C -0.09 -1.90 3.57 -19.86 -0.07 -1.97 16 21 C -0.11 -2.22 6.80 22.27 0.15 -2.07 16 22 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 23 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 24 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 25 C -0.12 -2.46 8.87 22.27 0.20 -2.26 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 1.24 5.58 -2.39 -0.01 1.23 16 28 H 0.06 1.44 7.59 -2.39 -0.02 1.42 16 29 H 0.06 1.47 7.58 -2.39 -0.02 1.45 16 30 H 0.06 1.09 7.02 -2.39 -0.02 1.08 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.34 9.33 7.91 -89.69 -0.71 8.62 16 34 H 0.06 2.20 7.58 -2.39 -0.02 2.18 16 35 H 0.01 0.50 7.95 -2.39 -0.02 0.48 16 36 H 0.07 2.24 7.75 -2.39 -0.02 2.22 16 37 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.04 1.51 6.95 -2.39 -0.02 1.49 16 39 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 40 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 41 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 42 H 0.13 2.73 6.86 -2.91 -0.02 2.71 16 43 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 44 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 45 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 46 H 0.12 2.22 8.04 -2.91 -0.02 2.19 16 Total: -1.00 -63.26 358.91 4.40 -58.86 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.21 Total: 18.80 kcal Atomic # 6 Polarization: -50.40 SS G_CDS: 4.05 Total: -46.35 kcal Atomic # 7 Polarization: -76.30 SS G_CDS: -1.90 Total: -78.19 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -63.26 4.40 -58.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602502759.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.729 kcal (2) G-P(sol) polarization free energy of solvation -63.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds