Wall clock time and date at job start Mon Mar 30 2020 01:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53010 * 109.47281 * 2 1 4 4 H 1.08998 * 109.46457 * 54.31681 * 3 2 1 5 5 C 1.52992 * 109.47144 * 174.31339 * 3 2 1 6 6 N 1.46898 * 109.47506 * 296.51580 * 5 3 2 7 7 C 1.46907 * 111.00167 * 180.02562 * 6 5 3 8 8 C 1.52997 * 109.47007 * 179.97438 * 7 6 5 9 9 H 1.08990 * 109.47433 * 305.00209 * 8 7 6 10 10 C 1.53001 * 109.46848 * 65.00595 * 8 7 6 11 11 C 1.53002 * 109.46848 * 184.99933 * 8 7 6 12 12 C 1.50702 * 109.47154 * 175.00309 * 11 8 7 13 13 H 1.08004 * 119.99763 * 359.97438 * 12 11 8 14 14 C 1.37874 * 120.00070 * 180.02562 * 12 11 8 15 15 N 1.31519 * 119.99932 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99832 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47602 * 59.99908 * 16 14 12 18 18 H 1.48505 * 109.46974 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.46936 * 299.99417 * 16 14 12 20 20 C 1.50700 * 109.47028 * 294.31913 * 3 2 1 21 21 C 1.38233 * 119.99770 * 299.72284 * 20 3 2 22 22 C 1.38231 * 119.99690 * 179.78928 * 21 20 3 23 23 C 1.38238 * 120.00090 * 0.44096 * 22 21 20 24 24 C 1.38227 * 120.00088 * 359.81232 * 23 22 21 25 25 C 1.38230 * 119.99923 * 119.99594 * 20 3 2 26 26 H 1.09001 * 109.46899 * 185.55414 * 1 2 3 27 27 H 1.09008 * 109.46778 * 305.54856 * 1 2 3 28 28 H 1.08997 * 109.47175 * 65.55010 * 1 2 3 29 29 H 1.09000 * 109.47335 * 240.00375 * 2 1 3 30 30 H 1.09001 * 109.47580 * 119.99856 * 2 1 3 31 31 H 1.08997 * 109.47068 * 176.51322 * 5 3 2 32 32 H 1.09007 * 109.46825 * 56.51716 * 5 3 2 33 33 H 1.00896 * 111.00187 * 303.95186 * 6 5 3 34 34 H 1.09002 * 109.46730 * 59.99519 * 7 6 5 35 35 H 1.09000 * 109.46717 * 300.00100 * 7 6 5 36 36 H 1.08999 * 109.47015 * 299.99256 * 10 8 7 37 37 H 1.09001 * 109.47120 * 179.97438 * 10 8 7 38 38 H 1.08998 * 109.47764 * 59.99618 * 10 8 7 39 39 H 1.09005 * 109.47211 * 294.99971 * 11 8 7 40 40 H 1.08998 * 109.47121 * 55.00089 * 11 8 7 41 41 H 0.97001 * 119.99605 * 179.97438 * 15 14 12 42 42 H 1.07994 * 120.00223 * 0.02562 * 21 20 3 43 43 H 1.08004 * 120.00141 * 180.27084 * 22 21 20 44 44 H 1.08006 * 119.99996 * 179.83127 * 23 22 21 45 45 H 1.07996 * 120.00153 * 179.97438 * 24 23 22 46 46 H 1.08003 * 120.00151 * 359.97438 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5960 1.9848 0.8347 5 6 3.5633 1.4449 0.1429 6 7 3.9341 0.8686 1.4423 7 6 5.3929 0.8551 1.6151 8 6 5.7395 0.2500 2.9769 9 1 5.2140 0.7948 3.7610 10 6 5.3151 -1.2197 3.0047 11 6 7.2484 0.3495 3.2101 12 6 7.5749 -0.1335 4.5997 13 1 6.7851 -0.4767 5.2516 14 6 8.8817 -0.1363 5.0393 15 7 9.8434 0.2821 4.2457 16 14 9.2864 -0.7356 6.7616 17 1 8.8558 -2.1492 6.9079 18 1 10.7508 -0.6378 6.9884 19 1 8.5746 0.1043 7.7580 20 6 1.6558 2.1112 -1.2947 21 6 2.1095 1.6016 -2.4970 22 6 1.7535 2.2123 -3.6848 23 6 0.9513 3.3381 -3.6700 24 6 0.5020 3.8508 -2.4675 25 6 0.8545 3.2374 -1.2798 26 1 -0.3633 -1.0229 0.0995 27 1 -0.3633 0.5975 0.8362 28 1 -0.3633 0.4253 -0.9355 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.9324 2.4686 0.0808 32 1 4.0042 0.8505 -0.6574 33 1 3.4854 1.3632 2.1985 34 1 5.7744 1.8749 1.5633 35 1 5.8469 0.2569 0.8251 36 1 4.2402 -1.2907 2.8387 37 1 5.5624 -1.6510 3.9748 38 1 5.8406 -1.7647 2.2206 39 1 7.7705 -0.2677 2.4789 40 1 7.5651 1.3869 3.1022 41 1 10.7627 0.2805 4.5551 42 1 2.7389 0.7241 -2.5084 43 1 2.1043 1.8116 -4.6244 44 1 0.6754 3.8169 -4.5980 45 1 -0.1243 4.7305 -2.4559 46 1 0.5033 3.6379 -0.3402 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602503639.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:02 Heat of formation + Delta-G solvation = -12.860841 kcal Electronic energy + Delta-G solvation = -20766.351395 eV Core-core repulsion = 17847.153033 eV Total energy + Delta-G solvation = -2919.198362 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.80119 -37.25951 -35.60678 -33.33588 -31.76215 -31.07888 -30.82671 -28.09113 -26.67501 -24.98680 -23.21443 -23.01505 -22.48311 -21.89331 -20.03750 -18.93949 -17.08415 -16.29280 -15.66940 -15.40308 -15.11005 -14.60551 -14.46989 -14.26953 -13.97568 -13.62587 -13.44655 -13.33298 -12.80967 -12.68698 -12.42723 -12.12160 -11.75462 -11.56707 -11.49775 -11.34920 -11.26460 -10.98968 -10.82467 -10.74726 -10.61504 -10.56051 -10.26889 -10.20274 -9.66968 -9.12820 -9.07501 -8.96503 -8.78313 -8.30752 -8.07329 -5.95678 -3.96807 1.21255 1.24482 3.35646 3.39911 3.42451 3.62923 4.33096 4.50228 4.58779 4.78810 4.86247 4.89533 4.98787 5.12142 5.21301 5.35798 5.38072 5.40017 5.43336 5.57068 5.63701 5.74659 5.83671 5.86913 5.90591 5.95278 6.00059 6.05835 6.18174 6.20935 6.28406 6.35174 6.40587 6.46235 6.57019 6.58229 6.71602 6.85621 7.04151 7.20879 7.22699 7.39349 7.67404 7.72479 7.88083 8.04731 8.48715 9.09477 9.66406 11.15879 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.033497 B = 0.002803 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.690137 B = 9988.335141 C =10388.397100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.108 4.108 3 C -0.047 4.047 4 H 0.075 0.925 5 C 0.066 3.934 6 N -0.685 5.685 7 C 0.064 3.936 8 C -0.082 4.082 9 H 0.053 0.947 10 C -0.122 4.122 11 C 0.027 3.973 12 C -0.513 4.513 13 H 0.056 0.944 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.890 3.110 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.065 4.065 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.130 4.130 24 C -0.120 4.120 25 C -0.119 4.119 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.084 0.916 31 H 0.026 0.974 32 H 0.071 0.929 33 H 0.336 0.664 34 H 0.023 0.977 35 H 0.065 0.935 36 H 0.042 0.958 37 H 0.052 0.948 38 H 0.039 0.961 39 H 0.016 0.984 40 H 0.012 0.988 41 H 0.260 0.740 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.678 4.341 -14.146 24.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.146 4.146 3 C -0.066 4.066 4 H 0.093 0.907 5 C -0.063 4.063 6 N -0.315 5.315 7 C -0.064 4.064 8 C -0.101 4.101 9 H 0.071 0.929 10 C -0.179 4.179 11 C -0.010 4.010 12 C -0.551 4.551 13 H 0.074 0.926 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.066 4.066 21 C -0.132 4.132 22 C -0.137 4.137 23 C -0.148 4.148 24 C -0.138 4.138 25 C -0.137 4.137 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.153 0.847 34 H 0.041 0.959 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.034 0.966 40 H 0.030 0.970 41 H 0.069 0.931 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.498 3.710 -14.383 24.511 hybrid contribution 0.583 0.770 0.990 1.383 sum -18.916 4.480 -13.392 23.605 Atomic orbital electron populations 1.21793 0.96493 1.01210 1.01342 1.21506 0.94877 0.94952 1.03254 1.20260 0.95690 0.96684 0.93950 0.90652 1.21962 0.93691 0.97354 0.93300 1.60542 1.09723 1.58229 1.03030 1.22143 0.85897 0.98676 0.99714 1.21190 0.99822 0.95818 0.93251 0.92881 1.21580 0.98955 0.96211 1.01178 1.19119 0.88353 0.96829 0.96728 1.21207 0.92418 1.42268 0.99204 0.92626 1.25024 0.96615 0.95633 0.97303 1.69961 1.00091 1.47664 1.36023 0.86689 0.77095 0.79376 0.85021 1.20258 1.21388 1.20331 1.19888 0.96588 0.95097 0.95006 1.21048 1.00015 1.00164 0.91962 1.21146 0.98341 0.96157 0.98064 1.21111 0.98865 0.96929 0.97882 1.21116 1.00187 0.99882 0.92640 1.21084 0.98677 0.95778 0.98132 0.93032 0.93020 0.93221 0.92283 0.89791 0.95581 0.91099 0.84689 0.95872 0.91625 0.93924 0.92853 0.94227 0.96590 0.96987 0.93059 0.86012 0.86263 0.86436 0.86350 0.86295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.64 37.16 0.36 -1.05 16 2 C -0.11 -1.12 5.25 -26.73 -0.14 -1.26 16 3 C -0.05 -0.49 2.18 -91.77 -0.20 -0.69 16 4 H 0.08 0.76 7.88 -51.93 -0.41 0.35 16 5 C 0.07 0.81 4.85 -3.83 -0.02 0.80 16 6 N -0.68 -9.62 5.25 -113.78 -0.60 -10.22 16 7 C 0.06 1.11 5.07 -3.82 -0.02 1.09 16 8 C -0.08 -1.67 2.48 -90.62 -0.22 -1.90 16 9 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 10 C -0.12 -2.37 8.89 37.16 0.33 -2.04 16 11 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 12 C -0.51 -14.46 8.41 -34.44 -0.29 -14.75 16 13 H 0.06 1.53 7.06 -52.48 -0.37 1.15 16 14 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 16 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 C -0.07 -0.67 3.89 -104.63 -0.41 -1.08 16 21 C -0.11 -1.14 8.68 -39.59 -0.34 -1.49 16 22 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 23 C -0.13 -1.13 10.05 -39.59 -0.40 -1.53 16 24 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 25 C -0.12 -1.14 9.67 -39.58 -0.38 -1.53 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 28 H 0.05 0.47 7.58 -51.93 -0.39 0.08 16 29 H 0.06 0.62 7.22 -51.93 -0.37 0.24 16 30 H 0.08 0.98 7.55 -51.93 -0.39 0.58 16 31 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.89 7.50 -51.92 -0.39 0.50 16 33 H 0.34 4.50 8.73 -39.29 -0.34 4.15 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.04 0.73 7.75 -51.93 -0.40 0.33 16 37 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.12 1.15 7.11 -52.49 -0.37 0.78 16 43 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 44 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 45 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 46 H 0.12 1.00 7.95 -52.48 -0.42 0.58 16 LS Contribution 367.50 15.07 5.54 5.54 Total: -1.00 -29.80 367.50 -10.53 -40.33 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -8.43 Total: 0.31 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: -2.75 Total: -26.29 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.14 Total: -36.71 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.80 -10.53 -40.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602503639.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.470 kcal (2) G-P(sol) polarization free energy of solvation -29.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds