Wall clock time and date at job start Mon Mar 30 2020 01:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53010 * 109.47281 * 2 1 4 4 H 1.08998 * 109.46457 * 54.31681 * 3 2 1 5 5 C 1.52992 * 109.47144 * 174.31339 * 3 2 1 6 6 N 1.46898 * 109.47506 * 296.51580 * 5 3 2 7 7 C 1.46907 * 111.00167 * 180.02562 * 6 5 3 8 8 C 1.52997 * 109.47007 * 179.97438 * 7 6 5 9 9 H 1.08990 * 109.47433 * 305.00209 * 8 7 6 10 10 C 1.53001 * 109.46848 * 65.00595 * 8 7 6 11 11 C 1.53002 * 109.46848 * 184.99933 * 8 7 6 12 12 C 1.50702 * 109.47154 * 175.00309 * 11 8 7 13 13 H 1.08004 * 119.99763 * 359.97438 * 12 11 8 14 14 C 1.37874 * 120.00070 * 180.02562 * 12 11 8 15 15 N 1.31519 * 119.99932 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99832 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47602 * 59.99908 * 16 14 12 18 18 H 1.48505 * 109.46974 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.46936 * 299.99417 * 16 14 12 20 20 C 1.50700 * 109.47028 * 294.31913 * 3 2 1 21 21 C 1.38233 * 119.99770 * 299.72284 * 20 3 2 22 22 C 1.38231 * 119.99690 * 179.78928 * 21 20 3 23 23 C 1.38238 * 120.00090 * 0.44096 * 22 21 20 24 24 C 1.38227 * 120.00088 * 359.81232 * 23 22 21 25 25 C 1.38230 * 119.99923 * 119.99594 * 20 3 2 26 26 H 1.09001 * 109.46899 * 185.55414 * 1 2 3 27 27 H 1.09008 * 109.46778 * 305.54856 * 1 2 3 28 28 H 1.08997 * 109.47175 * 65.55010 * 1 2 3 29 29 H 1.09000 * 109.47335 * 240.00375 * 2 1 3 30 30 H 1.09001 * 109.47580 * 119.99856 * 2 1 3 31 31 H 1.08997 * 109.47068 * 176.51322 * 5 3 2 32 32 H 1.09007 * 109.46825 * 56.51716 * 5 3 2 33 33 H 1.00896 * 111.00187 * 303.95186 * 6 5 3 34 34 H 1.09002 * 109.46730 * 59.99519 * 7 6 5 35 35 H 1.09000 * 109.46717 * 300.00100 * 7 6 5 36 36 H 1.08999 * 109.47015 * 299.99256 * 10 8 7 37 37 H 1.09001 * 109.47120 * 179.97438 * 10 8 7 38 38 H 1.08998 * 109.47764 * 59.99618 * 10 8 7 39 39 H 1.09005 * 109.47211 * 294.99971 * 11 8 7 40 40 H 1.08998 * 109.47121 * 55.00089 * 11 8 7 41 41 H 0.97001 * 119.99605 * 179.97438 * 15 14 12 42 42 H 1.07994 * 120.00223 * 0.02562 * 21 20 3 43 43 H 1.08004 * 120.00141 * 180.27084 * 22 21 20 44 44 H 1.08006 * 119.99996 * 179.83127 * 23 22 21 45 45 H 1.07996 * 120.00153 * 179.97438 * 24 23 22 46 46 H 1.08003 * 120.00151 * 359.97438 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5960 1.9848 0.8347 5 6 3.5633 1.4449 0.1429 6 7 3.9341 0.8686 1.4423 7 6 5.3929 0.8551 1.6151 8 6 5.7395 0.2500 2.9769 9 1 5.2140 0.7948 3.7610 10 6 5.3151 -1.2197 3.0047 11 6 7.2484 0.3495 3.2101 12 6 7.5749 -0.1335 4.5997 13 1 6.7851 -0.4767 5.2516 14 6 8.8817 -0.1363 5.0393 15 7 9.8434 0.2821 4.2457 16 14 9.2864 -0.7356 6.7616 17 1 8.8558 -2.1492 6.9079 18 1 10.7508 -0.6378 6.9884 19 1 8.5746 0.1043 7.7580 20 6 1.6558 2.1112 -1.2947 21 6 2.1095 1.6016 -2.4970 22 6 1.7535 2.2123 -3.6848 23 6 0.9513 3.3381 -3.6700 24 6 0.5020 3.8508 -2.4675 25 6 0.8545 3.2374 -1.2798 26 1 -0.3633 -1.0229 0.0995 27 1 -0.3633 0.5975 0.8362 28 1 -0.3633 0.4253 -0.9355 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.9324 2.4686 0.0808 32 1 4.0042 0.8505 -0.6574 33 1 3.4854 1.3632 2.1985 34 1 5.7744 1.8749 1.5633 35 1 5.8469 0.2569 0.8251 36 1 4.2402 -1.2907 2.8387 37 1 5.5624 -1.6510 3.9748 38 1 5.8406 -1.7647 2.2206 39 1 7.7705 -0.2677 2.4789 40 1 7.5651 1.3869 3.1022 41 1 10.7627 0.2805 4.5551 42 1 2.7389 0.7241 -2.5084 43 1 2.1043 1.8116 -4.6244 44 1 0.6754 3.8169 -4.5980 45 1 -0.1243 4.7305 -2.4559 46 1 0.5033 3.6379 -0.3402 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602503639.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:02 Heat of formation + Delta-G solvation = -27.294813 kcal Electronic energy + Delta-G solvation = -20766.977299 eV Core-core repulsion = 17847.153033 eV Total energy + Delta-G solvation = -2919.824266 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.54746 -38.49808 -36.86683 -34.99187 -33.49413 -31.76269 -31.57651 -29.40027 -28.40269 -26.46299 -24.64274 -23.79429 -23.56479 -22.93493 -21.09830 -20.39324 -18.49066 -17.77073 -16.65989 -16.58672 -16.35296 -15.97201 -15.61655 -15.36834 -15.06320 -14.80276 -14.49322 -14.21292 -14.17585 -13.93192 -13.47736 -13.38534 -13.26348 -13.07049 -12.75049 -12.68275 -12.51332 -12.28168 -12.19275 -12.06963 -11.94640 -11.75615 -11.50820 -11.42433 -11.37854 -11.07379 -10.87506 -10.52509 -9.76971 -9.54027 -9.29046 -8.16938 -6.26220 0.50527 0.54944 1.40438 1.43358 1.50966 2.42521 2.91116 3.16390 3.26396 3.77340 3.95057 4.12871 4.17913 4.20961 4.26620 4.33308 4.35151 4.43802 4.54977 4.59223 4.65654 4.68433 4.73922 4.81995 4.91134 4.94988 5.02823 5.05471 5.10763 5.16739 5.22544 5.28980 5.30279 5.41776 5.48218 5.52677 5.54213 5.57577 5.65621 5.67796 5.81698 5.82776 5.89728 6.07301 6.17618 6.31876 6.52752 6.89903 7.42074 8.95072 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.033497 B = 0.002803 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.690137 B = 9988.335141 C =10388.397100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 C -0.037 4.037 4 H 0.080 0.920 5 C 0.071 3.929 6 N -0.677 5.677 7 C 0.078 3.922 8 C -0.073 4.073 9 H 0.055 0.945 10 C -0.112 4.112 11 C 0.032 3.968 12 C -0.529 4.529 13 H 0.062 0.938 14 C -0.004 4.004 15 N -0.937 5.937 16 Si 0.961 3.039 17 H -0.267 1.267 18 H -0.285 1.285 19 H -0.267 1.267 20 C -0.077 4.077 21 C -0.128 4.128 22 C -0.128 4.128 23 C -0.135 4.135 24 C -0.126 4.126 25 C -0.129 4.129 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.020 0.980 32 H 0.067 0.933 33 H 0.343 0.657 34 H 0.014 0.986 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.037 0.963 38 H 0.033 0.967 39 H -0.011 1.011 40 H -0.016 1.016 41 H 0.262 0.738 42 H 0.121 0.879 43 H 0.135 0.865 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.506 4.396 -13.966 26.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.142 4.142 3 C -0.055 4.055 4 H 0.099 0.901 5 C -0.058 4.058 6 N -0.308 5.308 7 C -0.051 4.051 8 C -0.092 4.092 9 H 0.073 0.927 10 C -0.169 4.169 11 C -0.006 4.006 12 C -0.567 4.567 13 H 0.080 0.920 14 C -0.201 4.201 15 N -0.578 5.578 16 Si 0.786 3.214 17 H -0.192 1.192 18 H -0.211 1.211 19 H -0.192 1.192 20 C -0.077 4.077 21 C -0.146 4.146 22 C -0.146 4.146 23 C -0.153 4.153 24 C -0.144 4.144 25 C -0.147 4.147 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.038 0.962 32 H 0.085 0.915 33 H 0.161 0.839 34 H 0.032 0.968 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.007 0.993 40 H 0.002 0.998 41 H 0.070 0.930 42 H 0.139 0.861 43 H 0.152 0.848 44 H 0.156 0.844 45 H 0.156 0.844 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -21.353 3.765 -14.205 25.921 hybrid contribution 1.134 0.792 0.855 1.626 sum -20.219 4.557 -13.350 24.653 Atomic orbital electron populations 1.21731 0.95546 1.01588 1.01386 1.21449 0.95657 0.94658 1.02468 1.20138 0.93939 0.96934 0.94531 0.90125 1.21956 0.95239 0.96675 0.91968 1.60465 1.07335 1.58763 1.04226 1.21831 0.88076 0.97692 0.97546 1.20998 0.95926 0.97105 0.95130 0.92683 1.21476 1.00528 0.94896 1.00025 1.19019 0.91956 0.94283 0.95320 1.21623 0.92848 1.42016 1.00216 0.91992 1.25971 0.96555 0.95753 1.01788 1.70103 1.00514 1.48911 1.38235 0.85555 0.76919 0.79251 0.79671 1.19178 1.21078 1.19190 1.19887 0.97407 0.95679 0.94757 1.21172 1.00466 1.00522 0.92462 1.21407 0.98355 0.96379 0.98435 1.21434 0.98289 0.96690 0.98841 1.21419 1.00152 1.00408 0.92418 1.21290 0.98691 0.95670 0.99057 0.92578 0.92576 0.93440 0.92631 0.90932 0.96153 0.91497 0.83887 0.96771 0.92224 0.91212 0.94433 0.94808 0.99307 0.99754 0.92958 0.86111 0.84755 0.84371 0.84382 0.85305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.64 71.98 0.69 -1.78 16 2 C -0.10 -2.04 5.25 30.60 0.16 -1.88 16 3 C -0.04 -0.72 2.18 -11.54 -0.03 -0.74 16 4 H 0.08 1.50 7.88 -2.39 -0.02 1.48 16 5 C 0.07 1.68 4.85 86.30 0.42 2.10 16 6 N -0.68 -18.34 5.25 -513.89 -2.70 -21.04 16 7 C 0.08 2.69 5.07 86.30 0.44 3.13 16 8 C -0.07 -2.97 2.48 -10.79 -0.03 -3.00 16 9 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 10 C -0.11 -4.26 8.89 71.98 0.64 -3.62 16 11 C 0.03 1.69 4.45 29.85 0.13 1.83 16 12 C -0.53 -30.17 8.41 25.60 0.22 -29.95 16 13 H 0.06 3.38 7.06 -2.91 -0.02 3.36 16 14 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 15 N -0.94 -57.96 13.29 21.45 0.28 -57.67 16 16 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 18 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 C -0.08 -1.48 3.89 -19.87 -0.08 -1.56 16 21 C -0.13 -2.46 8.68 22.27 0.19 -2.27 16 22 C -0.13 -2.16 10.05 22.27 0.22 -1.94 16 23 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 24 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 25 C -0.13 -2.28 9.67 22.27 0.22 -2.07 16 26 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.05 0.83 7.58 -2.39 -0.02 0.81 16 29 H 0.05 1.11 7.22 -2.39 -0.02 1.09 16 30 H 0.07 1.58 7.55 -2.39 -0.02 1.57 16 31 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.07 1.65 7.50 -2.38 -0.02 1.64 16 33 H 0.34 8.66 8.73 -89.70 -0.78 7.88 16 34 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.07 2.27 7.75 -2.39 -0.02 2.25 16 37 H 0.04 1.52 6.95 -2.39 -0.02 1.51 16 38 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 39 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 40 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 41 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 42 H 0.12 2.25 7.11 -2.91 -0.02 2.22 16 43 H 0.13 1.76 8.06 -2.91 -0.02 1.73 16 44 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 45 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 46 H 0.13 1.93 7.95 -2.91 -0.02 1.91 16 Total: -1.00 -64.00 367.50 3.86 -60.14 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.13 Total: 16.89 kcal Atomic # 6 Polarization: -49.24 SS G_CDS: 4.11 Total: -45.13 kcal Atomic # 7 Polarization: -76.30 SS G_CDS: -2.41 Total: -78.71 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -64.00 3.86 -60.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602503639.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.844 kcal (2) G-P(sol) polarization free energy of solvation -63.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds