Wall clock time and date at job start Mon Mar 30 2020 01:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46978 * 2 1 4 4 H 1.09005 * 109.46925 * 304.99900 * 3 2 1 5 5 C 1.53006 * 109.47393 * 184.99853 * 3 2 1 6 6 N 1.46900 * 109.46556 * 64.99890 * 5 3 2 7 7 C 1.46905 * 110.99600 * 180.02562 * 6 5 3 8 8 C 1.52996 * 109.46995 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47272 * 304.99844 * 8 7 6 10 10 C 1.53001 * 109.47053 * 64.99996 * 8 7 6 11 11 C 1.53006 * 109.47261 * 184.99822 * 8 7 6 12 12 C 1.50692 * 109.47396 * 175.00170 * 11 8 7 13 13 H 1.08005 * 120.00315 * 359.97438 * 12 11 8 14 14 C 1.37871 * 120.00293 * 179.97438 * 12 11 8 15 15 N 1.31510 * 119.99992 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00308 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47087 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47252 * 120.00323 * 16 14 12 19 19 H 1.48503 * 109.47295 * 240.00106 * 16 14 12 20 20 C 1.50703 * 109.47515 * 64.99766 * 3 2 1 21 21 C 1.38235 * 120.00292 * 240.00251 * 20 3 2 22 22 C 1.38230 * 119.99899 * 179.97438 * 21 20 3 23 23 C 1.38235 * 120.00326 * 359.95697 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99503 * 59.97544 * 20 3 2 26 26 H 1.09006 * 109.47014 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47475 * 299.99849 * 1 2 3 28 28 H 1.08997 * 109.47226 * 60.00414 * 1 2 3 29 29 H 1.08994 * 109.47475 * 240.00151 * 2 1 3 30 30 H 1.08997 * 109.47226 * 119.99586 * 2 1 3 31 31 H 1.08999 * 109.47037 * 185.00019 * 5 3 2 32 32 H 1.08994 * 109.46747 * 305.00308 * 5 3 2 33 33 H 1.00896 * 111.00236 * 303.95364 * 6 5 3 34 34 H 1.09000 * 109.47250 * 299.99821 * 7 6 5 35 35 H 1.08992 * 109.47160 * 59.99977 * 7 6 5 36 36 H 1.09009 * 109.47259 * 179.97438 * 10 8 7 37 37 H 1.08997 * 109.47596 * 299.99576 * 10 8 7 38 38 H 1.09000 * 109.47721 * 59.99899 * 10 8 7 39 39 H 1.09005 * 109.47014 * 294.99990 * 11 8 7 40 40 H 1.09000 * 109.46711 * 54.99943 * 11 8 7 41 41 H 0.97000 * 120.00532 * 179.97438 * 15 14 12 42 42 H 1.08001 * 119.99730 * 359.97438 * 21 20 3 43 43 H 1.08000 * 120.00376 * 179.97438 * 22 21 20 44 44 H 1.08000 * 120.00616 * 179.72578 * 23 22 21 45 45 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 46 46 H 1.07997 * 120.00455 * 0.02562 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5648 1.4444 -0.1257 6 7 3.9489 0.8964 -1.4334 7 6 5.4096 0.8821 -1.5897 8 6 5.7702 0.3056 -2.9602 9 1 5.3114 -0.6767 -3.0733 10 6 5.2547 1.2387 -4.0577 11 6 7.2903 0.1746 -3.0745 12 6 7.6397 -0.5058 -4.3729 13 1 6.8560 -0.8145 -5.0488 14 6 8.9599 -0.7344 -4.6980 15 7 9.9143 -0.3590 -3.8747 16 14 9.3930 -1.5785 -6.3071 17 1 8.1471 -1.9000 -7.0484 18 1 10.2390 -0.6752 -7.1280 19 1 10.1374 -2.8319 -6.0239 20 6 1.6412 2.1164 1.2877 21 6 0.8401 3.2425 1.2592 22 6 0.4740 3.8602 2.4404 23 6 0.9083 3.3513 3.6501 24 6 1.7083 2.2244 3.6786 25 6 2.0763 1.6079 2.4972 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.9354 2.4656 -0.0366 32 1 3.9953 0.8312 0.6659 33 1 3.5623 -0.0260 -1.5666 34 1 5.7934 1.8993 -1.5106 35 1 5.8526 0.2649 -0.8083 36 1 5.5120 0.8281 -5.0342 37 1 4.1718 1.3319 -3.9764 38 1 5.7135 2.2209 -3.9447 39 1 7.7432 1.1659 -3.0505 40 1 7.6677 -0.4176 -2.2409 41 1 10.8432 -0.5201 -4.1032 42 1 0.5002 3.6397 0.3142 43 1 -0.1516 4.7403 2.4183 44 1 0.6259 3.8365 4.5727 45 1 2.0479 1.8270 4.6236 46 1 2.7022 0.7281 2.5195 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602503641.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:06 Heat of formation + Delta-G solvation = -12.321009 kcal Electronic energy + Delta-G solvation = -20757.546847 eV Core-core repulsion = 17838.371894 eV Total energy + Delta-G solvation = -2919.174953 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.83120 -37.32397 -35.62902 -33.31158 -31.75174 -31.08381 -30.88946 -28.10876 -26.67566 -24.98648 -23.26826 -23.12211 -22.57375 -21.86779 -19.89324 -18.99684 -17.09936 -16.30790 -15.78657 -15.44499 -14.96283 -14.68738 -14.61081 -14.30827 -14.04530 -13.64426 -13.49596 -13.07188 -12.86445 -12.69464 -12.38453 -12.14367 -12.06118 -11.63616 -11.47377 -11.32601 -11.28749 -10.92183 -10.86098 -10.77834 -10.67688 -10.60538 -10.26738 -10.15686 -9.67358 -9.13673 -9.07793 -8.94588 -8.78671 -8.31500 -8.08113 -5.95995 -3.96957 1.20659 1.24334 3.33088 3.40639 3.44817 3.62405 4.32854 4.50049 4.59459 4.74953 4.83585 4.89385 4.96935 4.98412 5.14949 5.32033 5.36817 5.39886 5.42638 5.52980 5.61854 5.73918 5.78178 5.81792 5.89231 5.90612 5.97413 6.05034 6.10339 6.16162 6.19184 6.33146 6.35281 6.45213 6.55396 6.58492 6.71981 6.85247 7.04423 7.21211 7.22803 7.39921 7.68132 7.72897 7.88067 8.04600 8.48752 9.09787 9.66409 11.15638 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.033576 B = 0.002789 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.722369 B =10037.040842 C =10339.584292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.049 4.049 4 H 0.087 0.913 5 C 0.067 3.933 6 N -0.687 5.687 7 C 0.064 3.936 8 C -0.082 4.082 9 H 0.053 0.947 10 C -0.122 4.122 11 C 0.027 3.973 12 C -0.511 4.511 13 H 0.057 0.943 14 C 0.054 3.946 15 N -0.897 5.897 16 Si 0.889 3.111 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.065 4.065 21 C -0.116 4.116 22 C -0.120 4.120 23 C -0.129 4.129 24 C -0.119 4.119 25 C -0.115 4.115 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.027 0.973 33 H 0.336 0.664 34 H 0.066 0.934 35 H 0.023 0.977 36 H 0.053 0.947 37 H 0.042 0.958 38 H 0.039 0.961 39 H 0.016 0.984 40 H 0.012 0.988 41 H 0.259 0.741 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.053 5.254 13.638 24.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.068 4.068 4 H 0.106 0.894 5 C -0.062 4.062 6 N -0.319 5.319 7 C -0.065 4.065 8 C -0.101 4.101 9 H 0.071 0.929 10 C -0.180 4.180 11 C -0.011 4.011 12 C -0.549 4.549 13 H 0.075 0.925 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.717 3.283 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.065 4.065 21 C -0.134 4.134 22 C -0.138 4.138 23 C -0.147 4.147 24 C -0.137 4.137 25 C -0.133 4.133 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.155 0.845 34 H 0.084 0.916 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.034 0.966 40 H 0.030 0.970 41 H 0.068 0.932 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.934 5.855 13.322 24.680 hybrid contribution 0.716 -1.140 -0.147 1.354 sum -19.218 4.715 13.174 23.772 Atomic orbital electron populations 1.21747 0.95724 1.01359 1.01814 1.21614 0.96173 0.95593 1.02184 1.20278 0.95818 0.96064 0.94593 0.89424 1.21949 0.93468 1.00331 0.90478 1.60576 1.12102 1.29320 1.29899 1.22146 0.85619 1.00606 0.98102 1.21195 0.99624 0.97429 0.91853 0.92900 1.21585 0.98780 0.98640 0.98970 1.19129 0.88153 0.97010 0.96805 1.21279 0.91727 1.37660 1.04259 0.92514 1.25026 0.96703 0.96020 0.96879 1.69976 0.99677 1.47769 1.36301 0.86578 0.78421 0.79262 0.84001 1.19746 1.21085 1.21135 1.19859 0.96645 0.95238 0.94794 1.21100 0.98382 0.95656 0.98259 1.21127 1.00196 0.99872 0.92614 1.21113 0.98889 0.96889 0.97846 1.21135 0.98344 0.96190 0.98080 1.21036 1.00084 1.00162 0.92040 0.92979 0.92827 0.92668 0.91126 0.92127 0.91146 0.95494 0.84537 0.91598 0.95852 0.92815 0.93934 0.94200 0.96561 0.96964 0.93174 0.86107 0.86300 0.86429 0.86308 0.86228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.73 37.16 0.36 -0.96 16 2 C -0.12 -1.14 5.18 -26.73 -0.14 -1.28 16 3 C -0.05 -0.51 2.24 -91.77 -0.21 -0.71 16 4 H 0.09 0.96 7.88 -51.93 -0.41 0.55 16 5 C 0.07 0.84 4.88 -3.82 -0.02 0.82 16 6 N -0.69 -9.91 5.95 -113.78 -0.68 -10.59 16 7 C 0.06 1.12 5.07 -3.82 -0.02 1.10 16 8 C -0.08 -1.69 2.48 -90.62 -0.22 -1.92 16 9 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 10 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 11 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 12 C -0.51 -14.43 8.41 -34.45 -0.29 -14.72 16 13 H 0.06 1.57 7.06 -52.48 -0.37 1.20 16 14 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 16 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 C -0.06 -0.66 3.76 -104.62 -0.39 -1.05 16 21 C -0.12 -1.12 9.67 -39.59 -0.38 -1.50 16 22 C -0.12 -1.06 10.05 -39.59 -0.40 -1.46 16 23 C -0.13 -1.12 10.05 -39.58 -0.40 -1.52 16 24 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 25 C -0.12 -1.15 8.71 -39.58 -0.34 -1.49 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.49 7.38 -51.93 -0.38 0.11 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.71 6.47 -51.93 -0.34 0.37 16 30 H 0.06 0.58 7.22 -51.93 -0.38 0.20 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.03 0.33 7.57 -51.93 -0.39 -0.06 16 33 H 0.34 4.57 6.89 -39.29 -0.27 4.30 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 1.12 6.95 -51.92 -0.36 0.76 16 37 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.12 1.03 7.95 -52.49 -0.42 0.61 16 43 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 45 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 46 H 0.12 1.12 7.13 -52.49 -0.37 0.75 16 LS Contribution 365.17 15.07 5.50 5.50 Total: -1.00 -30.01 365.17 -10.50 -40.51 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -8.30 Total: 0.45 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: -2.74 Total: -26.21 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.06 Total: -37.08 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.01 -10.50 -40.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602503641.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.188 kcal (2) G-P(sol) polarization free energy of solvation -30.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds