Wall clock time and date at job start Mon Mar 30 2020 01:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46978 * 2 1 4 4 H 1.09005 * 109.46925 * 304.99900 * 3 2 1 5 5 C 1.53006 * 109.47393 * 184.99853 * 3 2 1 6 6 N 1.46900 * 109.46556 * 64.99890 * 5 3 2 7 7 C 1.46905 * 110.99600 * 180.02562 * 6 5 3 8 8 C 1.52996 * 109.46995 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47272 * 304.99844 * 8 7 6 10 10 C 1.53001 * 109.47053 * 64.99996 * 8 7 6 11 11 C 1.53006 * 109.47261 * 184.99822 * 8 7 6 12 12 C 1.50692 * 109.47396 * 175.00170 * 11 8 7 13 13 H 1.08005 * 120.00315 * 359.97438 * 12 11 8 14 14 C 1.37871 * 120.00293 * 179.97438 * 12 11 8 15 15 N 1.31510 * 119.99992 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00308 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47087 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47252 * 120.00323 * 16 14 12 19 19 H 1.48503 * 109.47295 * 240.00106 * 16 14 12 20 20 C 1.50703 * 109.47515 * 64.99766 * 3 2 1 21 21 C 1.38235 * 120.00292 * 240.00251 * 20 3 2 22 22 C 1.38230 * 119.99899 * 179.97438 * 21 20 3 23 23 C 1.38235 * 120.00326 * 359.95697 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99503 * 59.97544 * 20 3 2 26 26 H 1.09006 * 109.47014 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47475 * 299.99849 * 1 2 3 28 28 H 1.08997 * 109.47226 * 60.00414 * 1 2 3 29 29 H 1.08994 * 109.47475 * 240.00151 * 2 1 3 30 30 H 1.08997 * 109.47226 * 119.99586 * 2 1 3 31 31 H 1.08999 * 109.47037 * 185.00019 * 5 3 2 32 32 H 1.08994 * 109.46747 * 305.00308 * 5 3 2 33 33 H 1.00896 * 111.00236 * 303.95364 * 6 5 3 34 34 H 1.09000 * 109.47250 * 299.99821 * 7 6 5 35 35 H 1.08992 * 109.47160 * 59.99977 * 7 6 5 36 36 H 1.09009 * 109.47259 * 179.97438 * 10 8 7 37 37 H 1.08997 * 109.47596 * 299.99576 * 10 8 7 38 38 H 1.09000 * 109.47721 * 59.99899 * 10 8 7 39 39 H 1.09005 * 109.47014 * 294.99990 * 11 8 7 40 40 H 1.09000 * 109.46711 * 54.99943 * 11 8 7 41 41 H 0.97000 * 120.00532 * 179.97438 * 15 14 12 42 42 H 1.08001 * 119.99730 * 359.97438 * 21 20 3 43 43 H 1.08000 * 120.00376 * 179.97438 * 22 21 20 44 44 H 1.08000 * 120.00616 * 179.72578 * 23 22 21 45 45 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 46 46 H 1.07997 * 120.00455 * 0.02562 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5648 1.4444 -0.1257 6 7 3.9489 0.8964 -1.4334 7 6 5.4096 0.8821 -1.5897 8 6 5.7702 0.3056 -2.9602 9 1 5.3114 -0.6767 -3.0733 10 6 5.2547 1.2387 -4.0577 11 6 7.2903 0.1746 -3.0745 12 6 7.6397 -0.5058 -4.3729 13 1 6.8560 -0.8145 -5.0488 14 6 8.9599 -0.7344 -4.6980 15 7 9.9143 -0.3590 -3.8747 16 14 9.3930 -1.5785 -6.3071 17 1 8.1471 -1.9000 -7.0484 18 1 10.2390 -0.6752 -7.1280 19 1 10.1374 -2.8319 -6.0239 20 6 1.6412 2.1164 1.2877 21 6 0.8401 3.2425 1.2592 22 6 0.4740 3.8602 2.4404 23 6 0.9083 3.3513 3.6501 24 6 1.7083 2.2244 3.6786 25 6 2.0763 1.6079 2.4972 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.9354 2.4656 -0.0366 32 1 3.9953 0.8312 0.6659 33 1 3.5623 -0.0260 -1.5666 34 1 5.7934 1.8993 -1.5106 35 1 5.8526 0.2649 -0.8083 36 1 5.5120 0.8281 -5.0342 37 1 4.1718 1.3319 -3.9764 38 1 5.7135 2.2209 -3.9447 39 1 7.7432 1.1659 -3.0505 40 1 7.6677 -0.4176 -2.2409 41 1 10.8432 -0.5201 -4.1032 42 1 0.5002 3.6397 0.3142 43 1 -0.1516 4.7403 2.4183 44 1 0.6259 3.8365 4.5727 45 1 2.0479 1.8270 4.6236 46 1 2.7022 0.7281 2.5195 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602503641.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:06 Heat of formation + Delta-G solvation = -27.124579 kcal Electronic energy + Delta-G solvation = -20758.188778 eV Core-core repulsion = 17838.371894 eV Total energy + Delta-G solvation = -2919.816884 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.57873 -38.54283 -36.91251 -34.97592 -33.47255 -31.76667 -31.61957 -29.41227 -28.41637 -26.47283 -24.65351 -23.91861 -23.66548 -22.89840 -20.95707 -20.44632 -18.49923 -17.78945 -16.81119 -16.57358 -16.35812 -15.86307 -15.73417 -15.41365 -15.16920 -14.74796 -14.51520 -14.28633 -14.17632 -13.71448 -13.45954 -13.39324 -13.35807 -13.12895 -12.84381 -12.73778 -12.53586 -12.35435 -12.21128 -12.00345 -11.97333 -11.73765 -11.54293 -11.42642 -11.38926 -11.08250 -10.87597 -10.53948 -9.77282 -9.54053 -9.31625 -8.17357 -6.26464 0.50252 0.54959 1.40116 1.40556 1.53719 2.42250 2.90873 3.16138 3.25588 3.80762 3.89371 4.05135 4.17144 4.20535 4.23046 4.32226 4.33696 4.38396 4.52357 4.56637 4.61890 4.69252 4.74144 4.80568 4.90385 4.93196 5.01298 5.02296 5.10005 5.11679 5.21305 5.25950 5.28781 5.34439 5.42945 5.47491 5.51764 5.56777 5.64364 5.67508 5.80976 5.81991 5.89273 6.06784 6.17511 6.31645 6.52242 6.89921 7.41916 8.95053 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.033576 B = 0.002789 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.722369 B =10037.040842 C =10339.584292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C -0.038 4.038 4 H 0.084 0.916 5 C 0.071 3.929 6 N -0.682 5.682 7 C 0.077 3.923 8 C -0.073 4.073 9 H 0.055 0.945 10 C -0.113 4.113 11 C 0.031 3.969 12 C -0.527 4.527 13 H 0.062 0.938 14 C -0.004 4.004 15 N -0.937 5.937 16 Si 0.961 3.039 17 H -0.261 1.261 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.076 4.076 21 C -0.127 4.127 22 C -0.125 4.125 23 C -0.134 4.134 24 C -0.128 4.128 25 C -0.129 4.129 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.028 0.972 33 H 0.343 0.657 34 H 0.058 0.942 35 H 0.017 0.983 36 H 0.038 0.962 37 H 0.068 0.932 38 H 0.033 0.967 39 H -0.011 1.011 40 H -0.015 1.015 41 H 0.262 0.738 42 H 0.129 0.871 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.134 0.866 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.776 5.184 13.509 26.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C -0.056 4.056 4 H 0.103 0.897 5 C -0.058 4.058 6 N -0.314 5.314 7 C -0.052 4.052 8 C -0.092 4.092 9 H 0.073 0.927 10 C -0.170 4.170 11 C -0.006 4.006 12 C -0.565 4.565 13 H 0.080 0.920 14 C -0.201 4.201 15 N -0.578 5.578 16 Si 0.786 3.214 17 H -0.185 1.185 18 H -0.206 1.206 19 H -0.205 1.205 20 C -0.076 4.076 21 C -0.145 4.145 22 C -0.143 4.143 23 C -0.152 4.152 24 C -0.146 4.146 25 C -0.147 4.147 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.046 0.954 33 H 0.163 0.837 34 H 0.077 0.923 35 H 0.035 0.965 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.052 0.948 39 H 0.007 0.993 40 H 0.004 0.996 41 H 0.070 0.930 42 H 0.146 0.854 43 H 0.156 0.844 44 H 0.157 0.843 45 H 0.152 0.848 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -21.682 5.783 13.196 26.032 hybrid contribution 1.235 -1.081 -0.029 1.642 sum -20.446 4.703 13.167 24.770 Atomic orbital electron populations 1.21693 0.94944 1.01779 1.01714 1.21598 0.96824 0.94941 1.02036 1.20138 0.93971 0.96671 0.94868 0.89730 1.21945 0.95074 0.99533 0.89275 1.60496 1.09703 1.29887 1.31356 1.21842 0.87733 0.99684 0.95989 1.21008 0.95805 0.98217 0.94189 0.92663 1.21485 1.00264 0.97734 0.97532 1.19025 0.91778 0.94636 0.95180 1.21670 0.92139 1.37592 1.05067 0.92006 1.25967 0.96691 0.96749 1.00694 1.70110 1.00146 1.49054 1.38454 0.85447 0.78474 0.78080 0.79365 1.18481 1.20570 1.20540 1.19854 0.97434 0.95774 0.94574 1.21291 0.98505 0.95623 0.99113 1.21421 1.00147 1.00382 0.92382 1.21434 0.98316 0.96666 0.98766 1.21400 0.98320 0.96392 0.98476 1.21157 1.00526 1.00531 0.92460 0.92302 0.93170 0.92483 0.91402 0.92093 0.92069 0.95402 0.83705 0.92300 0.96519 0.94321 0.91347 0.94783 0.99289 0.99626 0.92962 0.85354 0.84353 0.84346 0.84774 0.86218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.73 71.98 0.70 -1.63 16 2 C -0.12 -2.10 5.18 30.59 0.16 -1.94 16 3 C -0.04 -0.75 2.24 -11.54 -0.03 -0.77 16 4 H 0.08 1.74 7.88 -2.38 -0.02 1.72 16 5 C 0.07 1.71 4.88 86.31 0.42 2.13 16 6 N -0.68 -18.99 5.95 -513.89 -3.06 -22.05 16 7 C 0.08 2.69 5.07 86.30 0.44 3.13 16 8 C -0.07 -3.02 2.48 -10.79 -0.03 -3.05 16 9 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 10 C -0.11 -4.35 8.89 71.98 0.64 -3.71 16 11 C 0.03 1.67 4.45 29.85 0.13 1.81 16 12 C -0.53 -30.05 8.41 25.60 0.22 -29.84 16 13 H 0.06 3.39 7.06 -2.91 -0.02 3.37 16 14 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 15 N -0.94 -57.88 13.29 21.44 0.28 -57.59 16 16 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 17 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 20 C -0.08 -1.47 3.76 -19.87 -0.07 -1.54 16 21 C -0.13 -2.28 9.67 22.27 0.22 -2.07 16 22 C -0.13 -1.98 10.05 22.27 0.22 -1.76 16 23 C -0.13 -2.06 10.05 22.27 0.22 -1.83 16 24 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 25 C -0.13 -2.44 8.71 22.27 0.19 -2.25 16 26 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.05 0.85 7.38 -2.39 -0.02 0.83 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 1.26 6.47 -2.39 -0.02 1.24 16 30 H 0.06 1.09 7.22 -2.39 -0.02 1.08 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.03 0.68 7.57 -2.39 -0.02 0.66 16 33 H 0.34 8.86 6.89 -89.70 -0.62 8.25 16 34 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 35 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.04 1.58 6.95 -2.38 -0.02 1.57 16 37 H 0.07 2.27 7.75 -2.39 -0.02 2.26 16 38 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 39 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 40 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 41 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 42 H 0.13 2.01 7.95 -2.91 -0.02 1.99 16 43 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 44 H 0.14 1.48 8.06 -2.91 -0.02 1.45 16 45 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 46 H 0.12 2.18 7.13 -2.91 -0.02 2.16 16 Total: -1.00 -64.20 365.17 3.67 -60.53 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.30 Total: 17.28 kcal Atomic # 6 Polarization: -49.14 SS G_CDS: 4.12 Total: -45.02 kcal Atomic # 7 Polarization: -76.87 SS G_CDS: -2.78 Total: -79.64 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -64.20 3.67 -60.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602503641.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.404 kcal (2) G-P(sol) polarization free energy of solvation -64.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds