Wall clock time and date at job start Mon Mar 30 2020 01:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47346 * 2 1 4 4 C 1.53000 * 109.46735 * 240.00229 * 2 1 3 5 5 C 1.50691 * 109.47599 * 64.99865 * 4 2 1 6 6 H 1.08002 * 119.99906 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00211 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00042 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99992 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.47364 * 59.99877 * 9 7 5 11 11 H 1.48496 * 109.47120 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47054 * 300.00089 * 9 7 5 13 13 C 1.53000 * 109.47127 * 120.00307 * 2 1 3 14 14 N 1.46900 * 109.46932 * 294.99942 * 13 2 1 15 15 C 1.46901 * 110.99981 * 180.02562 * 14 13 2 16 16 H 1.08990 * 109.47350 * 34.99788 * 15 14 13 17 17 C 1.53002 * 109.46937 * 274.99476 * 15 14 13 18 18 C 1.53000 * 109.47143 * 155.00000 * 15 14 13 19 19 C 1.52997 * 109.47060 * 294.99574 * 18 15 14 20 20 C 1.50697 * 109.47466 * 180.02562 * 19 18 15 21 21 C 1.38235 * 120.00282 * 269.72898 * 20 19 18 22 22 C 1.38231 * 120.00276 * 179.76303 * 21 20 19 23 23 C 1.38234 * 119.99846 * 0.50808 * 22 21 20 24 24 C 1.38241 * 119.99835 * 359.74567 * 23 22 21 25 25 C 1.38230 * 119.99983 * 0.02562 * 24 23 22 26 26 H 1.08998 * 109.47099 * 300.00178 * 1 2 3 27 27 H 1.09000 * 109.46760 * 59.99864 * 1 2 3 28 28 H 1.09000 * 109.47346 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47165 * 185.00388 * 4 2 1 30 30 H 1.09011 * 109.46918 * 304.99588 * 4 2 1 31 31 H 0.96995 * 119.99954 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.46956 * 174.99540 * 13 2 1 33 33 H 1.09001 * 109.47324 * 54.99467 * 13 2 1 34 34 H 1.00907 * 110.99620 * 303.95300 * 14 13 2 35 35 H 1.08994 * 109.47359 * 179.97438 * 17 15 14 36 36 H 1.09000 * 109.47312 * 300.00336 * 17 15 14 37 37 H 1.09004 * 109.46964 * 60.00134 * 17 15 14 38 38 H 1.09002 * 109.47398 * 54.99743 * 18 15 14 39 39 H 1.09001 * 109.47194 * 174.99923 * 18 15 14 40 40 H 1.09002 * 109.47153 * 300.00319 * 19 18 15 41 41 H 1.08998 * 109.47533 * 59.99948 * 19 18 15 42 42 H 1.08008 * 119.99550 * 359.97438 * 21 20 19 43 43 H 1.07998 * 120.00386 * 180.23261 * 22 21 20 44 44 H 1.08002 * 120.00330 * 179.72114 * 23 22 21 45 45 H 1.07999 * 119.99721 * 179.97438 * 24 23 22 46 46 H 1.08007 * 119.99843 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0570 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9932 -0.4018 -3.7283 8 7 2.6763 -1.5188 -3.8512 9 14 1.4996 0.5633 -5.2496 10 1 2.0917 1.9238 -5.1866 11 1 1.9944 -0.1368 -6.4621 12 1 0.0196 0.6700 -5.3095 13 6 2.0401 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 2.1258 -0.6266 3.6671 16 1 3.0895 -1.0976 3.4738 17 6 1.1140 -1.6919 4.0943 18 6 2.2788 0.4083 4.7836 19 6 3.3798 1.4027 4.4098 20 6 3.5310 2.4217 5.5097 21 6 2.7924 3.5897 5.4762 22 6 2.9274 4.5221 6.4877 23 6 3.8088 4.2914 7.5272 24 6 4.5514 3.1258 7.5580 25 6 4.4128 2.1912 6.5490 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1262 -0.7995 -1.2057 30 1 1.6053 -1.7199 -1.2952 31 1 2.9235 -1.8418 -4.7318 32 1 3.1263 -0.7996 1.2055 33 1 1.6054 -1.7199 1.2951 34 1 1.9883 0.9873 2.3966 35 1 1.4661 -2.1848 5.0004 36 1 0.1502 -1.2208 4.2877 37 1 1.0050 -2.4292 3.2989 38 1 1.3374 0.9415 4.9163 39 1 2.5448 -0.0961 5.7126 40 1 4.3212 0.8695 4.2771 41 1 3.1139 1.9070 3.4809 42 1 2.1072 3.7721 4.6614 43 1 2.3476 5.4330 6.4634 44 1 3.9177 5.0220 8.3152 45 1 5.2403 2.9457 8.3700 46 1 4.9932 1.2807 6.5729 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602504507.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:06 Heat of formation + Delta-G solvation = -13.136608 kcal Electronic energy + Delta-G solvation = -20609.602613 eV Core-core repulsion = 17690.392293 eV Total energy + Delta-G solvation = -2919.210320 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.56473 -37.77147 -35.32948 -33.27024 -32.14062 -31.07745 -30.00167 -28.56432 -26.73538 -25.15707 -24.06989 -22.76571 -22.36327 -21.13996 -20.24269 -18.97154 -16.98393 -16.35494 -15.84116 -15.61577 -15.17522 -14.76234 -14.50135 -14.19912 -13.75739 -13.63013 -13.31907 -13.09544 -12.97159 -12.60142 -12.28730 -12.11058 -11.79035 -11.62274 -11.49611 -11.38100 -11.35828 -11.11352 -10.86255 -10.82183 -10.70404 -10.53299 -10.25277 -10.15377 -9.66034 -9.11801 -9.10566 -8.92643 -8.85099 -8.30397 -8.05215 -5.95365 -3.96407 1.16565 1.20638 3.35830 3.40089 3.42672 3.58769 4.42181 4.50758 4.53042 4.63442 4.79214 4.91820 4.98290 5.00098 5.13650 5.32900 5.37163 5.40292 5.51328 5.53328 5.68073 5.73677 5.77367 5.85183 5.88123 5.95364 5.98681 6.02444 6.17475 6.21497 6.27596 6.31680 6.38546 6.47144 6.49029 6.60757 6.73417 6.82048 7.06432 7.22089 7.24342 7.45247 7.70583 7.74995 7.88836 8.05111 8.49299 9.09869 9.66748 11.16192 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.022375 B = 0.002933 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.105994 B = 9542.894529 C =10188.428045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.052 0.948 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.064 3.936 14 N -0.684 5.684 15 C 0.081 3.919 16 H 0.040 0.960 17 C -0.138 4.138 18 C -0.112 4.112 19 C -0.088 4.088 20 C -0.074 4.074 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.130 4.130 24 C -0.120 4.120 25 C -0.119 4.119 26 H 0.041 0.959 27 H 0.052 0.948 28 H 0.039 0.961 29 H 0.012 0.988 30 H 0.016 0.984 31 H 0.260 0.740 32 H 0.023 0.977 33 H 0.065 0.935 34 H 0.336 0.664 35 H 0.049 0.951 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.124 0.876 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.607 7.056 23.144 24.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 H 0.070 0.930 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.317 5.317 15 C -0.029 4.029 16 H 0.058 0.942 17 C -0.196 4.196 18 C -0.150 4.150 19 C -0.126 4.126 20 C -0.074 4.074 21 C -0.134 4.134 22 C -0.137 4.137 23 C -0.148 4.148 24 C -0.138 4.138 25 C -0.138 4.138 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.030 0.970 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.155 0.845 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.142 0.858 43 H 0.138 0.862 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.059 6.649 23.042 24.006 hybrid contribution 0.811 0.646 -0.978 1.425 sum 1.870 7.295 22.065 23.314 Atomic orbital electron populations 1.21579 0.95754 1.00519 1.00067 1.21194 0.95975 0.98822 0.94117 0.92977 1.19114 0.95859 0.95561 0.90468 1.21207 1.34591 1.08261 0.91020 0.92640 1.25023 0.95357 0.95107 0.99079 1.69956 1.39093 1.21242 1.23448 0.86694 0.78905 0.80100 0.82506 1.20320 1.21389 1.20271 1.22183 0.96940 0.97815 0.89524 1.60640 1.64114 1.05592 1.01319 1.21526 0.96490 0.94560 0.90317 0.94176 1.21762 0.99482 0.98120 1.00225 1.21746 0.98711 0.96301 0.98231 1.20723 0.99856 0.95567 0.96406 1.19930 0.96043 0.95328 0.96133 1.21136 0.99502 0.93779 0.99002 1.21162 0.98657 0.99307 0.94540 1.21131 0.97255 0.97628 0.98753 1.21130 0.99623 0.94408 0.98673 1.21069 0.98850 0.99430 0.94402 0.93950 0.92874 0.94225 0.96994 0.96606 0.93065 0.95922 0.91607 0.84492 0.93197 0.92170 0.92581 0.90914 0.91512 0.91034 0.90601 0.85835 0.86158 0.86360 0.86285 0.86210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.89 37.16 0.33 -2.07 16 2 C -0.08 -1.69 2.48 -90.62 -0.22 -1.91 16 3 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.03 0.71 4.45 -27.89 -0.12 0.59 16 5 C -0.51 -14.48 8.41 -34.44 -0.29 -14.77 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 9 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.06 1.11 4.87 -3.82 -0.02 1.09 16 14 N -0.68 -9.76 5.76 -106.73 -0.62 -10.37 16 15 C 0.08 0.98 2.65 -67.71 -0.18 0.80 16 16 H 0.04 0.51 7.80 -51.93 -0.40 0.10 16 17 C -0.14 -1.61 9.41 37.16 0.35 -1.26 16 18 C -0.11 -1.13 4.79 -26.73 -0.13 -1.26 16 19 C -0.09 -0.87 5.17 -27.89 -0.14 -1.02 16 20 C -0.07 -0.75 5.13 -104.63 -0.54 -1.28 16 21 C -0.12 -1.15 9.70 -39.58 -0.38 -1.53 16 22 C -0.12 -1.07 10.05 -39.59 -0.40 -1.46 16 23 C -0.13 -1.10 10.05 -39.58 -0.40 -1.50 16 24 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 25 C -0.12 -1.12 9.70 -39.59 -0.38 -1.51 16 26 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 27 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 16 33 H 0.07 1.18 7.44 -51.93 -0.39 0.79 16 34 H 0.34 4.56 6.47 -39.29 -0.25 4.31 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.72 7.45 -51.93 -0.39 0.33 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 41 H 0.08 0.79 6.37 -51.93 -0.33 0.46 16 42 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 43 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 45 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 46 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 LS Contribution 368.32 15.07 5.55 5.55 Total: -1.00 -30.15 368.32 -10.74 -40.89 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -8.37 Total: 0.62 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: -3.02 Total: -27.05 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.12 Total: -36.87 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.15 -10.74 -40.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602504507.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.755 kcal (2) G-P(sol) polarization free energy of solvation -30.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds