Wall clock time and date at job start Mon Mar 30 2020 01:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47004 * 2 1 4 4 C 1.53001 * 109.47225 * 119.99560 * 2 1 3 5 5 C 1.50695 * 109.47307 * 295.00108 * 4 2 1 6 6 H 1.07993 * 120.00428 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99598 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00403 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99791 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46847 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.46989 * 119.99700 * 9 7 5 12 12 H 1.48500 * 109.47023 * 239.99908 * 9 7 5 13 13 C 1.52999 * 109.47248 * 240.00222 * 2 1 3 14 14 N 1.46898 * 109.47336 * 64.99514 * 13 2 1 15 15 C 1.46899 * 111.00210 * 180.02562 * 14 13 2 16 16 C 1.52996 * 109.47254 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47276 * 179.97438 * 16 15 14 18 18 H 1.09000 * 109.47140 * 54.99820 * 17 16 15 19 19 C 1.53006 * 109.47164 * 294.99872 * 17 16 15 20 20 C 1.50699 * 109.47265 * 175.00072 * 17 16 15 21 21 C 1.38238 * 120.00214 * 59.72657 * 20 17 16 22 22 C 1.38232 * 120.00436 * 179.78790 * 21 20 17 23 23 C 1.38238 * 119.99303 * 0.44108 * 22 21 20 24 24 C 1.38233 * 120.00665 * 359.81377 * 23 22 21 25 25 C 1.38234 * 120.00001 * 239.99759 * 20 17 16 26 26 H 1.08996 * 109.47203 * 60.00225 * 1 2 3 27 27 H 1.08998 * 109.47149 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46864 * 299.99988 * 1 2 3 29 29 H 1.09000 * 109.46933 * 55.00821 * 4 2 1 30 30 H 1.09005 * 109.46690 * 174.99614 * 4 2 1 31 31 H 0.96995 * 120.00287 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.46957 * 304.99659 * 13 2 1 33 33 H 1.08998 * 109.47387 * 184.99979 * 13 2 1 34 34 H 1.00903 * 111.00025 * 303.95715 * 14 13 2 35 35 H 1.08998 * 109.47118 * 59.99698 * 15 14 13 36 36 H 1.09000 * 109.46828 * 299.99730 * 15 14 13 37 37 H 1.09006 * 109.47249 * 59.99480 * 16 15 14 38 38 H 1.09001 * 109.47456 * 300.00127 * 16 15 14 39 39 H 1.09001 * 109.47002 * 59.99738 * 19 17 16 40 40 H 1.08993 * 109.46955 * 180.02562 * 19 17 16 41 41 H 1.09000 * 109.47050 * 300.00004 * 19 17 16 42 42 H 1.08003 * 119.99587 * 0.02562 * 21 20 17 43 43 H 1.07991 * 120.00708 * 180.27081 * 22 21 20 44 44 H 1.08005 * 119.99582 * 179.83484 * 23 22 21 45 45 H 1.08001 * 120.00481 * 180.02562 * 24 23 22 46 46 H 1.07995 * 119.99877 * 359.97438 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 0.0572 2.4766 6 1 1.0800 0.9742 2.3758 7 6 1.9934 -0.4016 3.7283 8 7 2.6766 -1.5186 3.8512 9 14 1.4986 0.5628 5.2497 10 1 0.7412 1.7738 4.8434 11 1 0.6454 -0.2870 6.1185 12 1 2.7165 0.9685 5.9963 13 6 2.0400 -0.7212 -1.2492 14 7 1.6513 0.0374 -2.4456 15 6 2.1247 -0.6271 -3.6672 16 6 1.7024 0.1909 -4.8892 17 6 2.1959 -0.5008 -6.1615 18 1 1.8336 -1.5287 -6.1801 19 6 3.7259 -0.4990 -6.1823 20 6 1.6763 0.2370 -7.3683 21 6 2.0014 1.5671 -7.5583 22 6 1.5284 2.2428 -8.6676 23 6 0.7227 1.5907 -9.5823 24 6 0.3932 0.2621 -9.3897 25 6 0.8699 -0.4147 -8.2826 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6055 -1.7197 1.2952 30 1 3.1264 -0.7994 1.2055 31 1 2.9239 -1.8415 4.7317 32 1 1.6055 -1.7197 -1.2951 33 1 3.1263 -0.7994 -1.2056 34 1 0.6528 0.1793 -2.4753 35 1 1.6904 -1.6249 -3.7297 36 1 3.2116 -0.7049 -3.6406 37 1 2.1370 1.1886 -4.8265 38 1 0.6155 0.2693 -4.9161 39 1 4.1017 -1.0326 -5.3093 40 1 4.0774 -0.9914 -7.0889 41 1 4.0882 0.5289 -6.1636 42 1 2.6282 2.0774 -6.8419 43 1 1.7860 3.2806 -8.8183 44 1 0.3509 2.1193 -10.4477 45 1 -0.2359 -0.2474 -10.1046 46 1 0.6127 -1.4527 -8.1322 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602527461.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:48 Heat of formation + Delta-G solvation = -13.898329 kcal Electronic energy + Delta-G solvation = -20276.249735 eV Core-core repulsion = 17357.006384 eV Total energy + Delta-G solvation = -2919.243351 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.77573 -37.36814 -35.83943 -33.64384 -31.95619 -31.13695 -30.02173 -28.18970 -26.76883 -25.31638 -24.06339 -22.93960 -22.30776 -21.59978 -20.01558 -18.85751 -17.12911 -16.46056 -15.89501 -15.48773 -15.25357 -14.71500 -14.37090 -14.29562 -14.00257 -13.67938 -13.50508 -13.24294 -13.05044 -12.56122 -12.37413 -12.16204 -12.12298 -11.69746 -11.63320 -11.45107 -11.32050 -11.01546 -10.87057 -10.78893 -10.70929 -10.55504 -10.28933 -10.14914 -9.69021 -9.14379 -9.13516 -8.95112 -8.86599 -8.31496 -8.09641 -5.95925 -3.96852 1.13956 1.17721 3.33337 3.40840 3.45091 3.55881 4.29492 4.48786 4.52201 4.63393 4.77213 4.86485 4.93601 5.04776 5.19757 5.25403 5.31000 5.39363 5.39908 5.41957 5.60947 5.70586 5.79318 5.80059 5.82805 5.85059 5.87590 5.96027 6.07839 6.14713 6.19420 6.27233 6.29397 6.30514 6.47671 6.50447 6.59085 6.78535 6.98134 7.13374 7.20167 7.42173 7.69734 7.72947 7.88698 8.04693 8.48756 9.09825 9.66449 11.15661 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.041657 B = 0.002352 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.994457 B =11900.678304 C =12118.338695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.065 0.935 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.065 3.935 14 N -0.692 5.692 15 C 0.056 3.944 16 C -0.108 4.108 17 C -0.052 4.052 18 H 0.076 0.924 19 C -0.145 4.145 20 C -0.071 4.071 21 C -0.113 4.113 22 C -0.119 4.119 23 C -0.129 4.129 24 C -0.120 4.120 25 C -0.120 4.120 26 H 0.031 0.969 27 H 0.040 0.960 28 H 0.062 0.938 29 H 0.014 0.986 30 H 0.015 0.985 31 H 0.259 0.741 32 H 0.022 0.978 33 H 0.066 0.934 34 H 0.337 0.663 35 H 0.024 0.976 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.356 2.925 -26.559 26.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.083 0.917 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.323 5.323 15 C -0.073 4.073 16 C -0.146 4.146 17 C -0.071 4.071 18 H 0.095 0.905 19 C -0.202 4.202 20 C -0.071 4.071 21 C -0.131 4.131 22 C -0.137 4.137 23 C -0.147 4.147 24 C -0.138 4.138 25 C -0.138 4.138 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.032 0.968 30 H 0.033 0.967 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.084 0.916 34 H 0.155 0.845 35 H 0.042 0.958 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.736 3.232 -26.386 26.640 hybrid contribution -0.872 -0.360 0.836 1.260 sum -2.608 2.872 -25.551 25.844 Atomic orbital electron populations 1.21740 0.96730 1.00394 1.00264 1.21222 0.94844 1.00085 0.94179 0.91664 1.19119 0.96136 0.95368 0.90415 1.21280 1.34439 1.08256 0.90976 0.92506 1.25033 0.95380 0.95119 0.99128 1.69973 1.39207 1.21274 1.23241 0.86571 0.78250 0.80118 0.83282 1.19750 1.21137 1.21092 1.22128 1.00273 0.94392 0.89611 1.60582 1.19516 1.50633 1.01574 1.22009 1.00742 0.94924 0.89649 1.21619 1.00857 0.99888 0.92190 1.20167 0.96177 0.98889 0.91915 0.90539 1.21896 0.94108 1.02350 1.01879 1.19925 0.96944 0.94254 0.95939 1.21058 1.00142 0.94184 0.97695 1.21161 0.97981 0.99877 0.94713 1.21130 0.99027 0.95005 0.99528 1.21129 1.00092 0.94846 0.97778 1.21096 0.98114 0.99910 0.94652 0.94959 0.94072 0.91877 0.96777 0.96666 0.93175 0.95948 0.91558 0.84492 0.95814 0.90946 0.90837 0.92117 0.91774 0.92818 0.92314 0.85931 0.86187 0.86367 0.86284 0.86231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 8.77 37.16 0.33 -2.21 16 2 C -0.08 -1.75 2.54 -90.62 -0.23 -1.98 16 3 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 4 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 5 C -0.51 -14.45 8.41 -34.44 -0.29 -14.74 16 6 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 9 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 13 C 0.06 1.14 5.14 -3.83 -0.02 1.12 16 14 N -0.69 -10.35 6.50 -113.79 -0.74 -11.09 16 15 C 0.06 0.69 5.44 -3.83 -0.02 0.67 16 16 C -0.11 -1.12 4.68 -26.73 -0.13 -1.24 16 17 C -0.05 -0.48 2.56 -91.77 -0.24 -0.71 16 18 H 0.08 0.67 7.88 -51.93 -0.41 0.26 16 19 C -0.15 -1.25 8.76 37.16 0.33 -0.93 16 20 C -0.07 -0.66 4.78 -104.62 -0.50 -1.16 16 21 C -0.11 -1.04 8.76 -39.58 -0.35 -1.38 16 22 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 23 C -0.13 -1.04 10.05 -39.58 -0.40 -1.44 16 24 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 25 C -0.12 -1.06 9.67 -39.58 -0.38 -1.44 16 26 H 0.03 0.51 6.68 -51.93 -0.35 0.17 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 1.29 6.95 -51.93 -0.36 0.93 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.34 4.81 6.98 -39.29 -0.27 4.53 16 35 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.89 6.56 -51.93 -0.34 0.55 16 37 H 0.07 0.80 7.56 -51.93 -0.39 0.41 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.56 6.56 -51.93 -0.34 0.22 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.50 7.40 -51.93 -0.38 0.12 16 42 H 0.12 1.04 7.16 -52.48 -0.38 0.66 16 43 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 45 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 46 H 0.12 0.90 7.95 -52.49 -0.42 0.48 16 LS Contribution 364.72 15.07 5.50 5.50 Total: -1.00 -30.25 364.72 -10.66 -40.91 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -8.22 Total: 0.48 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: -2.91 Total: -26.20 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.00 Total: -37.54 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.25 -10.66 -40.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602527461.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.015 kcal (2) G-P(sol) polarization free energy of solvation -30.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds