Wall clock time and date at job start Mon Mar 30 2020 01:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47004 * 2 1 4 4 C 1.53001 * 109.47225 * 119.99560 * 2 1 3 5 5 C 1.50695 * 109.47307 * 295.00108 * 4 2 1 6 6 H 1.07993 * 120.00428 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99598 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00403 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99791 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46847 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.46989 * 119.99700 * 9 7 5 12 12 H 1.48500 * 109.47023 * 239.99908 * 9 7 5 13 13 C 1.52999 * 109.47248 * 240.00222 * 2 1 3 14 14 N 1.46898 * 109.47336 * 64.99514 * 13 2 1 15 15 C 1.46899 * 111.00210 * 180.02562 * 14 13 2 16 16 C 1.52996 * 109.47254 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47276 * 179.97438 * 16 15 14 18 18 H 1.09000 * 109.47140 * 54.99820 * 17 16 15 19 19 C 1.53006 * 109.47164 * 294.99872 * 17 16 15 20 20 C 1.50699 * 109.47265 * 175.00072 * 17 16 15 21 21 C 1.38238 * 120.00214 * 59.72657 * 20 17 16 22 22 C 1.38232 * 120.00436 * 179.78790 * 21 20 17 23 23 C 1.38238 * 119.99303 * 0.44108 * 22 21 20 24 24 C 1.38233 * 120.00665 * 359.81377 * 23 22 21 25 25 C 1.38234 * 120.00001 * 239.99759 * 20 17 16 26 26 H 1.08996 * 109.47203 * 60.00225 * 1 2 3 27 27 H 1.08998 * 109.47149 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46864 * 299.99988 * 1 2 3 29 29 H 1.09000 * 109.46933 * 55.00821 * 4 2 1 30 30 H 1.09005 * 109.46690 * 174.99614 * 4 2 1 31 31 H 0.96995 * 120.00287 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.46957 * 304.99659 * 13 2 1 33 33 H 1.08998 * 109.47387 * 184.99979 * 13 2 1 34 34 H 1.00903 * 111.00025 * 303.95715 * 14 13 2 35 35 H 1.08998 * 109.47118 * 59.99698 * 15 14 13 36 36 H 1.09000 * 109.46828 * 299.99730 * 15 14 13 37 37 H 1.09006 * 109.47249 * 59.99480 * 16 15 14 38 38 H 1.09001 * 109.47456 * 300.00127 * 16 15 14 39 39 H 1.09001 * 109.47002 * 59.99738 * 19 17 16 40 40 H 1.08993 * 109.46955 * 180.02562 * 19 17 16 41 41 H 1.09000 * 109.47050 * 300.00004 * 19 17 16 42 42 H 1.08003 * 119.99587 * 0.02562 * 21 20 17 43 43 H 1.07991 * 120.00708 * 180.27081 * 22 21 20 44 44 H 1.08005 * 119.99582 * 179.83484 * 23 22 21 45 45 H 1.08001 * 120.00481 * 180.02562 * 24 23 22 46 46 H 1.07995 * 119.99877 * 359.97438 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 0.0572 2.4766 6 1 1.0800 0.9742 2.3758 7 6 1.9934 -0.4016 3.7283 8 7 2.6766 -1.5186 3.8512 9 14 1.4986 0.5628 5.2497 10 1 0.7412 1.7738 4.8434 11 1 0.6454 -0.2870 6.1185 12 1 2.7165 0.9685 5.9963 13 6 2.0400 -0.7212 -1.2492 14 7 1.6513 0.0374 -2.4456 15 6 2.1247 -0.6271 -3.6672 16 6 1.7024 0.1909 -4.8892 17 6 2.1959 -0.5008 -6.1615 18 1 1.8336 -1.5287 -6.1801 19 6 3.7259 -0.4990 -6.1823 20 6 1.6763 0.2370 -7.3683 21 6 2.0014 1.5671 -7.5583 22 6 1.5284 2.2428 -8.6676 23 6 0.7227 1.5907 -9.5823 24 6 0.3932 0.2621 -9.3897 25 6 0.8699 -0.4147 -8.2826 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6055 -1.7197 1.2952 30 1 3.1264 -0.7994 1.2055 31 1 2.9239 -1.8415 4.7317 32 1 1.6055 -1.7197 -1.2951 33 1 3.1263 -0.7994 -1.2056 34 1 0.6528 0.1793 -2.4753 35 1 1.6904 -1.6249 -3.7297 36 1 3.2116 -0.7049 -3.6406 37 1 2.1370 1.1886 -4.8265 38 1 0.6155 0.2693 -4.9161 39 1 4.1017 -1.0326 -5.3093 40 1 4.0774 -0.9914 -7.0889 41 1 4.0882 0.5289 -6.1636 42 1 2.6282 2.0774 -6.8419 43 1 1.7860 3.2806 -8.8183 44 1 0.3509 2.1193 -10.4477 45 1 -0.2359 -0.2474 -10.1046 46 1 0.6127 -1.4527 -8.1322 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602527461.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:47 Heat of formation + Delta-G solvation = -29.154885 kcal Electronic energy + Delta-G solvation = -20276.911309 eV Core-core repulsion = 17357.006384 eV Total energy + Delta-G solvation = -2919.904925 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.42803 -38.63706 -36.97873 -35.21945 -33.74209 -31.75089 -30.89491 -29.32850 -28.50528 -26.72633 -25.17939 -23.98883 -23.51922 -22.53975 -20.90810 -20.40816 -18.53145 -17.78130 -17.05648 -16.62410 -16.19415 -16.09624 -15.54662 -15.36512 -15.24809 -14.61974 -14.40832 -14.38168 -14.11038 -13.92233 -13.61918 -13.44748 -13.30511 -13.07395 -12.79101 -12.73894 -12.50387 -12.45744 -12.21496 -12.10624 -11.93337 -11.78194 -11.52810 -11.48836 -11.32814 -11.05636 -10.87784 -10.53907 -9.77195 -9.54515 -9.32878 -8.17359 -6.26374 0.50378 0.54842 1.40105 1.40566 1.53730 2.42249 2.91357 3.15970 3.25966 3.75102 3.89471 4.12381 4.18545 4.21028 4.27200 4.30152 4.32963 4.41548 4.47959 4.52055 4.61389 4.67302 4.72839 4.75561 4.78186 4.87611 4.99936 5.03305 5.06617 5.13518 5.20294 5.22396 5.24808 5.36717 5.39811 5.39890 5.48480 5.56243 5.64207 5.67828 5.80371 5.81267 5.89663 6.11362 6.18212 6.32041 6.53174 6.89795 7.41798 8.94935 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.041657 B = 0.002352 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.994457 B =11900.678304 C =12118.338695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.076 4.076 3 H 0.056 0.944 4 C 0.032 3.968 5 C -0.527 4.527 6 H 0.061 0.939 7 C -0.005 4.005 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.077 3.923 14 N -0.692 5.692 15 C 0.057 3.943 16 C -0.097 4.097 17 C -0.046 4.046 18 H 0.081 0.919 19 C -0.143 4.143 20 C -0.083 4.083 21 C -0.127 4.127 22 C -0.129 4.129 23 C -0.135 4.135 24 C -0.128 4.128 25 C -0.132 4.132 26 H 0.066 0.934 27 H 0.040 0.960 28 H 0.045 0.955 29 H -0.010 1.010 30 H -0.014 1.014 31 H 0.262 0.738 32 H 0.022 0.978 33 H 0.056 0.944 34 H 0.343 0.657 35 H 0.029 0.971 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.124 0.876 43 H 0.135 0.865 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.441 3.887 -27.760 28.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.095 4.095 3 H 0.074 0.926 4 C -0.006 4.006 5 C -0.565 4.565 6 H 0.079 0.921 7 C -0.202 4.202 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.206 1.206 13 C -0.052 4.052 14 N -0.324 5.324 15 C -0.071 4.071 16 C -0.135 4.135 17 C -0.065 4.065 18 H 0.099 0.901 19 C -0.201 4.201 20 C -0.083 4.083 21 C -0.145 4.145 22 C -0.147 4.147 23 C -0.153 4.153 24 C -0.145 4.145 25 C -0.150 4.150 26 H 0.085 0.915 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.008 0.992 30 H 0.005 0.995 31 H 0.070 0.930 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.162 0.838 35 H 0.047 0.953 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.142 0.858 43 H 0.153 0.847 44 H 0.156 0.844 45 H 0.156 0.844 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.829 4.203 -27.608 28.069 hybrid contribution -0.517 -0.669 1.139 1.418 sum -3.347 3.534 -26.469 26.913 Atomic orbital electron populations 1.21649 0.94980 1.00648 1.01109 1.21024 0.96240 0.98977 0.93259 0.92553 1.19016 0.94221 0.94595 0.92741 1.21667 1.34290 1.08526 0.92045 0.92086 1.25975 0.95316 0.96148 1.02719 1.70105 1.40370 1.22969 1.24215 0.85437 0.78062 0.78870 0.78923 1.18571 1.20493 1.20570 1.21827 0.99532 0.94195 0.89639 1.60513 1.20045 1.50439 1.01448 1.22062 1.00689 0.95317 0.89083 1.21502 1.00722 0.99361 0.91878 1.20090 0.96289 0.98905 0.91222 0.90105 1.21876 0.93913 1.02308 1.01960 1.19988 0.97553 0.94483 0.96242 1.21199 1.00604 0.94399 0.98255 1.21428 0.97945 1.00749 0.94564 1.21445 0.98647 0.95195 1.00029 1.21429 1.00087 0.95111 0.97913 1.21322 0.98149 1.00605 0.94898 0.91507 0.94098 0.93576 0.99196 0.99524 0.92951 0.95992 0.92534 0.83789 0.95323 0.91072 0.91334 0.92156 0.92058 0.92359 0.92417 0.85808 0.84709 0.84419 0.84429 0.85223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 8.77 71.98 0.63 -4.03 16 2 C -0.08 -3.17 2.54 -10.79 -0.03 -3.19 16 3 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 4 C 0.03 1.70 4.45 29.85 0.13 1.83 16 5 C -0.53 -30.18 8.41 25.60 0.22 -29.96 16 6 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 7 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 8 N -0.94 -57.75 13.29 21.45 0.28 -57.47 16 9 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 10 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 13 C 0.08 2.72 5.14 86.30 0.44 3.16 16 14 N -0.69 -19.80 6.50 -513.91 -3.34 -23.14 16 15 C 0.06 1.34 5.44 86.30 0.47 1.81 16 16 C -0.10 -1.88 4.68 30.59 0.14 -1.74 16 17 C -0.05 -0.78 2.56 -11.54 -0.03 -0.81 16 18 H 0.08 1.29 7.88 -2.39 -0.02 1.27 16 19 C -0.14 -2.34 8.76 71.98 0.63 -1.71 16 20 C -0.08 -1.45 4.78 -19.87 -0.09 -1.54 16 21 C -0.13 -2.20 8.76 22.27 0.20 -2.00 16 22 C -0.13 -1.99 10.05 22.27 0.22 -1.77 16 23 C -0.14 -1.93 10.05 22.27 0.22 -1.71 16 24 C -0.13 -1.86 10.05 22.27 0.22 -1.63 16 25 C -0.13 -2.14 9.67 22.27 0.22 -1.93 16 26 H 0.07 1.99 6.68 -2.39 -0.02 1.97 16 27 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.05 1.84 6.95 -2.38 -0.02 1.82 16 29 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 30 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 31 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 32 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.34 9.07 6.98 -89.69 -0.63 8.45 16 35 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.07 1.69 6.56 -2.39 -0.02 1.67 16 37 H 0.07 1.41 7.56 -2.38 -0.02 1.39 16 38 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.06 1.02 6.56 -2.39 -0.02 1.01 16 40 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.06 0.94 7.40 -2.39 -0.02 0.92 16 42 H 0.12 2.01 7.16 -2.91 -0.02 1.99 16 43 H 0.14 1.57 8.06 -2.92 -0.02 1.55 16 44 H 0.14 1.34 8.06 -2.91 -0.02 1.31 16 45 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 46 H 0.13 1.74 7.95 -2.91 -0.02 1.71 16 Total: -1.00 -64.88 364.72 3.33 -61.55 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.30 Total: 17.12 kcal Atomic # 6 Polarization: -49.08 SS G_CDS: 4.06 Total: -45.02 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -3.06 Total: -80.61 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -64.88 3.33 -61.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602527461.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.398 kcal (2) G-P(sol) polarization free energy of solvation -64.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds