Wall clock time and date at job start Mon Mar 30 2020 01:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47836 * 2 1 4 4 C 1.53002 * 109.47165 * 240.00035 * 2 1 3 5 5 C 1.50706 * 109.47153 * 64.99782 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.52998 * 109.47026 * 120.00356 * 2 1 3 14 14 N 1.46896 * 109.47357 * 294.99646 * 13 2 1 15 15 C 1.46897 * 111.00246 * 180.02562 * 14 13 2 16 16 C 1.53002 * 109.47032 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.47236 * 180.02562 * 16 15 14 18 18 H 1.09008 * 109.46816 * 305.00172 * 17 16 15 19 19 C 1.52999 * 109.47222 * 64.99709 * 17 16 15 20 20 C 1.50702 * 109.47249 * 185.00496 * 17 16 15 21 21 C 1.38235 * 119.99372 * 299.72247 * 20 17 16 22 22 C 1.38242 * 119.99634 * 179.81288 * 21 20 17 23 23 C 1.38241 * 119.99842 * 0.39675 * 22 21 20 24 24 C 1.38236 * 119.99734 * 359.85807 * 23 22 21 25 25 C 1.38226 * 120.00110 * 119.99888 * 20 17 16 26 26 H 1.09001 * 109.46970 * 300.00039 * 1 2 3 27 27 H 1.09003 * 109.46843 * 59.99176 * 1 2 3 28 28 H 1.08990 * 109.47503 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47178 * 305.00572 * 4 2 1 30 30 H 1.08993 * 109.47411 * 185.00254 * 4 2 1 31 31 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 32 32 H 1.09001 * 109.47074 * 54.99862 * 13 2 1 33 33 H 1.09002 * 109.47150 * 174.99607 * 13 2 1 34 34 H 1.00907 * 110.99905 * 303.95595 * 14 13 2 35 35 H 1.08999 * 109.47308 * 300.00064 * 15 14 13 36 36 H 1.09002 * 109.47010 * 60.00170 * 15 14 13 37 37 H 1.08999 * 109.47278 * 300.00268 * 16 15 14 38 38 H 1.09002 * 109.46933 * 60.00308 * 16 15 14 39 39 H 1.09000 * 109.46513 * 60.00458 * 19 17 16 40 40 H 1.08998 * 109.47129 * 180.02562 * 19 17 16 41 41 H 1.08992 * 109.47278 * 300.00572 * 19 17 16 42 42 H 1.07996 * 120.00413 * 0.02562 * 21 20 17 43 43 H 1.07998 * 119.99997 * 180.23414 * 22 21 20 44 44 H 1.07997 * 119.99655 * 179.83414 * 23 22 21 45 45 H 1.08002 * 119.99825 * 179.97438 * 24 23 22 46 46 H 1.08000 * 120.00226 * 359.97438 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4767 6 1 1.0806 0.9745 -2.3756 7 6 1.9922 -0.4021 -3.7284 8 7 2.6796 -1.5166 -3.8511 9 14 1.4986 0.5629 -5.2497 10 1 0.1739 0.0910 -5.7270 11 1 1.4183 2.0075 -4.9150 12 1 2.5110 0.3575 -6.3164 13 6 2.0399 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 2.1258 -0.6267 3.6671 16 6 1.7035 0.1914 4.8891 17 6 2.1981 -0.4999 6.1613 18 1 1.8363 -1.5280 6.1803 19 6 3.7280 -0.4972 6.1814 20 6 1.6785 0.2379 7.3683 21 6 2.0122 1.5650 7.5636 22 6 1.5325 2.2429 8.6688 23 6 0.7257 1.5912 9.5828 24 6 0.3963 0.2626 9.3901 25 6 0.8729 -0.4141 8.2830 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0275 0.0005 29 1 1.6053 -1.7198 -1.2952 30 1 3.1262 -0.7995 -1.2056 31 1 2.9362 -2.0177 -3.0611 32 1 1.6053 -1.7199 1.2950 33 1 3.1263 -0.7996 1.2055 34 1 1.9883 0.9872 2.3967 35 1 1.6921 -1.6248 3.7300 36 1 3.2127 -0.7039 3.6399 37 1 2.1375 1.1892 4.8260 38 1 0.6166 0.2689 4.9165 39 1 4.0897 0.5309 6.1624 40 1 4.0803 -0.9900 7.0875 41 1 4.1037 -1.0307 5.3084 42 1 2.6449 2.0733 6.8511 43 1 1.7901 3.2808 8.8195 44 1 0.3531 2.1201 10.4476 45 1 -0.2337 -0.2467 10.1045 46 1 0.6155 -1.4522 8.1325 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602527463.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:50 Heat of formation + Delta-G solvation = -17.986128 kcal Electronic energy + Delta-G solvation = -20306.657274 eV Core-core repulsion = 17387.236663 eV Total energy + Delta-G solvation = -2919.420611 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.80528 -37.40244 -35.90715 -33.86229 -32.01932 -31.16086 -30.04435 -28.19794 -26.39379 -25.24460 -23.94544 -22.96209 -22.38063 -21.71235 -20.11940 -19.18164 -17.14413 -16.66620 -15.86986 -15.68828 -15.22246 -14.60491 -14.43267 -14.18256 -13.82840 -13.65248 -13.54599 -13.47840 -13.04143 -12.98610 -12.46596 -12.19135 -11.84833 -11.69092 -11.61171 -11.41479 -11.39654 -11.02863 -10.93102 -10.82488 -10.74316 -10.61554 -10.15481 -10.06642 -9.78719 -9.42115 -9.16667 -8.92339 -8.44039 -8.27224 -8.13723 -6.30256 -3.98065 1.11668 1.15373 3.46328 3.49968 3.53450 3.65528 4.24353 4.49201 4.54540 4.60195 4.74870 4.83336 4.88114 5.05015 5.14112 5.19214 5.27556 5.29040 5.43022 5.46369 5.54212 5.63265 5.69505 5.73321 5.78877 5.81564 5.82062 5.91174 6.07089 6.10111 6.17394 6.24698 6.26840 6.35030 6.43699 6.47605 6.62183 6.76095 6.92099 7.09356 7.14650 7.31861 7.44337 7.58937 7.66130 8.29817 8.53349 8.95205 9.73380 11.10215 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.041570 B = 0.002359 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.404636 B =11866.953663 C =12084.296645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.076 4.076 3 H 0.054 0.946 4 C 0.013 3.987 5 C -0.593 4.593 6 H 0.050 0.950 7 C 0.011 3.989 8 N -0.917 5.917 9 Si 1.070 2.930 10 H -0.288 1.288 11 H -0.289 1.289 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.688 5.688 15 C 0.057 3.943 16 C -0.107 4.107 17 C -0.053 4.053 18 H 0.078 0.922 19 C -0.146 4.146 20 C -0.070 4.070 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.129 4.129 24 C -0.120 4.120 25 C -0.119 4.119 26 H 0.043 0.957 27 H 0.054 0.946 28 H 0.038 0.962 29 H 0.007 0.993 30 H 0.003 0.997 31 H 0.268 0.732 32 H 0.065 0.935 33 H 0.022 0.978 34 H 0.336 0.664 35 H 0.068 0.932 36 H 0.028 0.972 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.335 4.086 26.940 27.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.095 4.095 3 H 0.073 0.927 4 C -0.024 4.024 5 C -0.631 4.631 6 H 0.068 0.932 7 C -0.192 4.192 8 N -0.554 5.554 9 Si 0.899 3.101 10 H -0.215 1.215 11 H -0.215 1.215 12 H -0.211 1.211 13 C -0.065 4.065 14 N -0.319 5.319 15 C -0.073 4.073 16 C -0.145 4.145 17 C -0.072 4.072 18 H 0.097 0.903 19 C -0.203 4.203 20 C -0.070 4.070 21 C -0.132 4.132 22 C -0.137 4.137 23 C -0.147 4.147 24 C -0.138 4.138 25 C -0.137 4.137 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.025 0.975 30 H 0.021 0.979 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.040 0.960 34 H 0.154 0.846 35 H 0.086 0.914 36 H 0.046 0.954 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.864 3.812 25.311 25.665 hybrid contribution 0.853 0.143 1.699 1.906 sum -1.012 3.955 27.010 27.317 Atomic orbital electron populations 1.21573 0.95512 1.00525 1.00300 1.21059 0.96153 0.98810 0.93435 0.92737 1.19258 0.95105 0.95632 0.92411 1.22061 1.38558 1.10227 0.92244 0.93172 1.25835 0.94743 0.97207 1.01410 1.70749 1.36029 1.15087 1.33499 0.83526 0.76324 0.74939 0.75312 1.21511 1.21536 1.21108 1.22148 0.96972 0.97718 0.89672 1.60510 1.64083 1.05719 1.01556 1.22006 0.97214 0.98311 0.89725 1.21609 1.01919 0.98759 0.92191 1.20164 0.95920 0.99115 0.91954 0.90312 1.21909 0.94326 1.02159 1.01938 1.19907 0.96973 0.94256 0.95891 1.21028 1.00178 0.94230 0.97753 1.21157 0.97976 0.99829 0.94777 1.21133 0.99015 0.95007 0.99501 1.21138 1.00013 0.94838 0.97784 1.21100 0.98058 0.99946 0.94555 0.93780 0.92666 0.94291 0.97505 0.97900 0.92181 0.91691 0.95980 0.84635 0.91373 0.95375 0.91974 0.90946 0.92502 0.92713 0.91897 0.86125 0.86209 0.86335 0.86232 0.86152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.45 8.89 37.16 0.33 -2.12 16 2 C -0.08 -1.59 2.48 -90.62 -0.22 -1.81 16 3 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 4 C 0.01 0.35 3.76 -27.88 -0.10 0.24 16 5 C -0.59 -17.02 8.41 -34.44 -0.29 -17.31 16 6 H 0.05 1.42 7.06 -52.49 -0.37 1.05 16 7 C 0.01 0.33 5.46 -17.82 -0.10 0.23 16 8 N -0.92 -28.58 13.65 55.43 0.76 -27.82 16 9 Si 1.07 25.80 29.90 -169.99 -5.08 20.72 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.06 1.12 5.07 -3.83 -0.02 1.10 16 14 N -0.69 -10.09 5.96 -113.78 -0.68 -10.77 16 15 C 0.06 0.68 5.44 -3.82 -0.02 0.66 16 16 C -0.11 -1.09 4.69 -26.73 -0.13 -1.21 16 17 C -0.05 -0.47 2.56 -91.77 -0.24 -0.70 16 18 H 0.08 0.68 7.88 -51.92 -0.41 0.27 16 19 C -0.15 -1.22 8.76 37.16 0.33 -0.90 16 20 C -0.07 -0.65 4.78 -104.63 -0.50 -1.15 16 21 C -0.11 -1.03 8.76 -39.58 -0.35 -1.37 16 22 C -0.12 -1.00 10.05 -39.58 -0.40 -1.39 16 23 C -0.13 -1.03 10.05 -39.58 -0.40 -1.43 16 24 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 25 C -0.12 -1.05 9.67 -39.59 -0.38 -1.43 16 26 H 0.04 0.79 7.75 -51.93 -0.40 0.39 16 27 H 0.05 1.19 6.95 -51.93 -0.36 0.83 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.01 0.18 8.01 -51.93 -0.42 -0.23 16 30 H 0.00 0.08 8.00 -51.93 -0.42 -0.34 16 31 H 0.27 8.32 7.22 -40.82 -0.29 8.03 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.34 4.69 8.73 -39.29 -0.34 4.35 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.03 0.33 6.56 -51.93 -0.34 -0.01 16 37 H 0.06 0.62 7.58 -51.93 -0.39 0.22 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.46 7.37 -51.93 -0.38 0.08 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16 42 H 0.12 0.98 7.16 -52.49 -0.38 0.61 16 43 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 44 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 45 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 46 H 0.12 0.90 7.95 -52.49 -0.42 0.48 16 LS Contribution 365.67 15.07 5.51 5.51 Total: -1.00 -31.10 365.67 -10.67 -41.76 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -8.29 Total: 0.57 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: -2.88 Total: -29.98 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.08 Total: -38.58 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.08 Total: 20.72 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.10 -10.67 -41.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602527463.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.779 kcal (2) G-P(sol) polarization free energy of solvation -31.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds