Wall clock time and date at job start Mon Mar 30 2020 01:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47836 * 2 1 4 4 C 1.53002 * 109.47165 * 240.00035 * 2 1 3 5 5 C 1.50706 * 109.47153 * 64.99782 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.52998 * 109.47026 * 120.00356 * 2 1 3 14 14 N 1.46896 * 109.47357 * 294.99646 * 13 2 1 15 15 C 1.46897 * 111.00246 * 180.02562 * 14 13 2 16 16 C 1.53002 * 109.47032 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.47236 * 180.02562 * 16 15 14 18 18 H 1.09008 * 109.46816 * 305.00172 * 17 16 15 19 19 C 1.52999 * 109.47222 * 64.99709 * 17 16 15 20 20 C 1.50702 * 109.47249 * 185.00496 * 17 16 15 21 21 C 1.38235 * 119.99372 * 299.72247 * 20 17 16 22 22 C 1.38242 * 119.99634 * 179.81288 * 21 20 17 23 23 C 1.38241 * 119.99842 * 0.39675 * 22 21 20 24 24 C 1.38236 * 119.99734 * 359.85807 * 23 22 21 25 25 C 1.38226 * 120.00110 * 119.99888 * 20 17 16 26 26 H 1.09001 * 109.46970 * 300.00039 * 1 2 3 27 27 H 1.09003 * 109.46843 * 59.99176 * 1 2 3 28 28 H 1.08990 * 109.47503 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47178 * 305.00572 * 4 2 1 30 30 H 1.08993 * 109.47411 * 185.00254 * 4 2 1 31 31 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 32 32 H 1.09001 * 109.47074 * 54.99862 * 13 2 1 33 33 H 1.09002 * 109.47150 * 174.99607 * 13 2 1 34 34 H 1.00907 * 110.99905 * 303.95595 * 14 13 2 35 35 H 1.08999 * 109.47308 * 300.00064 * 15 14 13 36 36 H 1.09002 * 109.47010 * 60.00170 * 15 14 13 37 37 H 1.08999 * 109.47278 * 300.00268 * 16 15 14 38 38 H 1.09002 * 109.46933 * 60.00308 * 16 15 14 39 39 H 1.09000 * 109.46513 * 60.00458 * 19 17 16 40 40 H 1.08998 * 109.47129 * 180.02562 * 19 17 16 41 41 H 1.08992 * 109.47278 * 300.00572 * 19 17 16 42 42 H 1.07996 * 120.00413 * 0.02562 * 21 20 17 43 43 H 1.07998 * 119.99997 * 180.23414 * 22 21 20 44 44 H 1.07997 * 119.99655 * 179.83414 * 23 22 21 45 45 H 1.08002 * 119.99825 * 179.97438 * 24 23 22 46 46 H 1.08000 * 120.00226 * 359.97438 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4767 6 1 1.0806 0.9745 -2.3756 7 6 1.9922 -0.4021 -3.7284 8 7 2.6796 -1.5166 -3.8511 9 14 1.4986 0.5629 -5.2497 10 1 0.1739 0.0910 -5.7270 11 1 1.4183 2.0075 -4.9150 12 1 2.5110 0.3575 -6.3164 13 6 2.0399 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 2.1258 -0.6267 3.6671 16 6 1.7035 0.1914 4.8891 17 6 2.1981 -0.4999 6.1613 18 1 1.8363 -1.5280 6.1803 19 6 3.7280 -0.4972 6.1814 20 6 1.6785 0.2379 7.3683 21 6 2.0122 1.5650 7.5636 22 6 1.5325 2.2429 8.6688 23 6 0.7257 1.5912 9.5828 24 6 0.3963 0.2626 9.3901 25 6 0.8729 -0.4141 8.2830 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0275 0.0005 29 1 1.6053 -1.7198 -1.2952 30 1 3.1262 -0.7995 -1.2056 31 1 2.9362 -2.0177 -3.0611 32 1 1.6053 -1.7199 1.2950 33 1 3.1263 -0.7996 1.2055 34 1 1.9883 0.9872 2.3967 35 1 1.6921 -1.6248 3.7300 36 1 3.2127 -0.7039 3.6399 37 1 2.1375 1.1892 4.8260 38 1 0.6166 0.2689 4.9165 39 1 4.0897 0.5309 6.1624 40 1 4.0803 -0.9900 7.0875 41 1 4.1037 -1.0307 5.3084 42 1 2.6449 2.0733 6.8511 43 1 1.7901 3.2808 8.8195 44 1 0.3531 2.1201 10.4476 45 1 -0.2337 -0.2467 10.1045 46 1 0.6155 -1.4522 8.1325 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602527463.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:49 Heat of formation + Delta-G solvation = -33.793001 kcal Electronic energy + Delta-G solvation = -20307.342711 eV Core-core repulsion = 17387.236663 eV Total energy + Delta-G solvation = -2920.106049 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.44970 -38.68001 -37.10071 -35.43524 -33.77725 -31.76813 -30.89420 -29.20232 -28.31191 -26.61243 -25.16156 -24.09410 -23.56949 -22.61101 -21.19285 -20.53859 -18.85976 -17.75864 -16.94296 -16.40818 -16.10763 -15.93030 -15.76928 -15.54531 -15.28566 -14.94865 -14.37735 -14.27044 -14.19475 -13.98686 -13.70960 -13.54315 -13.17493 -13.09760 -12.82576 -12.67516 -12.50809 -12.47241 -12.10870 -11.94949 -11.92735 -11.86535 -11.57875 -11.51695 -11.38911 -11.27910 -10.55743 -10.52594 -9.78879 -9.56348 -9.35553 -8.65856 -6.34742 0.48698 0.53097 1.52205 1.61645 1.79013 2.57501 2.89271 3.18164 3.19622 3.73456 3.83484 4.00953 4.13205 4.18596 4.22913 4.27749 4.29571 4.36797 4.41542 4.48618 4.57609 4.65365 4.68733 4.71992 4.78649 4.80875 4.87849 4.96694 5.00979 5.07050 5.10139 5.19772 5.20549 5.30944 5.31691 5.36209 5.38787 5.47885 5.62295 5.63981 5.65983 5.78407 5.99231 6.10947 6.16437 6.22184 6.46018 6.62044 7.46161 8.74795 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.041570 B = 0.002359 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.404636 B =11866.953663 C =12084.296645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.069 4.069 3 H 0.053 0.947 4 C 0.015 3.985 5 C -0.604 4.604 6 H 0.052 0.948 7 C -0.045 4.045 8 N -0.942 5.942 9 Si 1.119 2.881 10 H -0.273 1.273 11 H -0.269 1.269 12 H -0.284 1.284 13 C 0.077 3.923 14 N -0.688 5.688 15 C 0.059 3.941 16 C -0.095 4.095 17 C -0.046 4.046 18 H 0.080 0.920 19 C -0.143 4.143 20 C -0.083 4.083 21 C -0.127 4.127 22 C -0.129 4.129 23 C -0.135 4.135 24 C -0.128 4.128 25 C -0.132 4.132 26 H 0.068 0.932 27 H 0.037 0.963 28 H 0.034 0.966 29 H -0.014 1.014 30 H -0.017 1.017 31 H 0.254 0.746 32 H 0.060 0.940 33 H 0.018 0.982 34 H 0.343 0.657 35 H 0.066 0.934 36 H 0.034 0.966 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.125 0.875 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.039 5.316 28.177 28.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 H 0.071 0.929 4 C -0.022 4.022 5 C -0.642 4.642 6 H 0.071 0.929 7 C -0.241 4.241 8 N -0.580 5.580 9 Si 0.940 3.060 10 H -0.199 1.199 11 H -0.193 1.193 12 H -0.210 1.210 13 C -0.052 4.052 14 N -0.319 5.319 15 C -0.070 4.070 16 C -0.133 4.133 17 C -0.065 4.065 18 H 0.099 0.901 19 C -0.201 4.201 20 C -0.083 4.083 21 C -0.145 4.145 22 C -0.147 4.147 23 C -0.153 4.153 24 C -0.145 4.145 25 C -0.150 4.150 26 H 0.087 0.913 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.004 0.996 30 H 0.001 0.999 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.036 0.964 34 H 0.161 0.839 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.143 0.857 43 H 0.154 0.846 44 H 0.156 0.844 45 H 0.155 0.845 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.573 5.046 26.586 27.183 hybrid contribution 1.073 -0.243 1.405 1.784 sum -1.500 4.802 27.991 28.439 Atomic orbital electron populations 1.21474 0.94580 1.00323 1.00590 1.20905 0.96796 0.98286 0.92764 0.92871 1.19202 0.93729 0.94909 0.94394 1.22453 1.37989 1.10361 0.93373 0.92950 1.27432 0.94074 0.97343 1.05279 1.70890 1.37937 1.16367 1.32818 0.82911 0.76604 0.74694 0.71749 1.19863 1.19328 1.20952 1.21836 0.96449 0.97329 0.89571 1.60449 1.64255 1.05921 1.01243 1.22050 0.97531 0.98316 0.89116 1.21484 1.01209 0.98767 0.91876 1.20087 0.96185 0.99005 0.91264 0.90148 1.21882 0.93915 1.02295 1.01972 1.19983 0.97553 0.94564 0.96177 1.21192 1.00596 0.94359 0.98323 1.21436 0.97889 1.00732 0.94618 1.21449 0.98681 0.95163 1.00040 1.21431 1.00048 0.95149 0.97919 1.21324 0.98209 1.00606 0.94892 0.91290 0.94422 0.94723 0.99575 0.99919 0.93687 0.92130 0.96426 0.83943 0.91591 0.94792 0.91552 0.91953 0.92303 0.92364 0.92165 0.85677 0.84640 0.84408 0.84462 0.85297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.42 8.89 71.98 0.64 -3.78 16 2 C -0.07 -2.86 2.48 -10.79 -0.03 -2.88 16 3 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 4 C 0.02 0.81 3.76 29.85 0.11 0.92 16 5 C -0.60 -34.94 8.41 25.60 0.22 -34.72 16 6 H 0.05 2.95 7.06 -2.91 -0.02 2.93 16 7 C -0.04 -2.65 5.46 84.65 0.46 -2.18 16 8 N -0.94 -59.75 13.65 21.45 0.29 -59.46 16 9 Si 1.12 51.33 29.90 68.60 2.05 53.38 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 13 C 0.08 2.68 5.07 86.30 0.44 3.12 16 14 N -0.69 -19.14 5.96 -513.90 -3.06 -22.20 16 15 C 0.06 1.33 5.44 86.30 0.47 1.80 16 16 C -0.10 -1.81 4.69 30.60 0.14 -1.67 16 17 C -0.05 -0.77 2.56 -11.54 -0.03 -0.80 16 18 H 0.08 1.30 7.88 -2.38 -0.02 1.28 16 19 C -0.14 -2.22 8.76 71.98 0.63 -1.59 16 20 C -0.08 -1.44 4.78 -19.87 -0.09 -1.53 16 21 C -0.13 -2.13 8.76 22.27 0.20 -1.93 16 22 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 23 C -0.14 -1.93 10.05 22.27 0.22 -1.70 16 24 C -0.13 -1.88 10.05 22.27 0.22 -1.65 16 25 C -0.13 -2.18 9.67 22.27 0.22 -1.96 16 26 H 0.07 2.36 7.75 -2.39 -0.02 2.34 16 27 H 0.04 1.58 6.95 -2.39 -0.02 1.57 16 28 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 29 H -0.01 -0.80 8.01 -2.39 -0.02 -0.82 16 30 H -0.02 -0.99 8.00 -2.39 -0.02 -1.01 16 31 H 0.25 16.32 7.22 -92.71 -0.67 15.65 16 32 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.34 8.94 8.73 -89.69 -0.78 8.16 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.03 0.75 6.56 -2.39 -0.02 0.73 16 37 H 0.07 1.21 7.58 -2.39 -0.02 1.19 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.06 0.88 7.37 -2.39 -0.02 0.86 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 0.96 6.56 -2.39 -0.02 0.94 16 42 H 0.13 1.88 7.16 -2.91 -0.02 1.86 16 43 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 44 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 45 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16 46 H 0.13 1.78 7.95 -2.91 -0.02 1.76 16 Total: -1.00 -66.44 365.67 3.56 -62.88 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.24 Total: 17.71 kcal Atomic # 6 Polarization: -56.35 SS G_CDS: 4.04 Total: -52.30 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -2.77 Total: -81.66 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 2.05 Total: 53.38 kcal Total: -66.44 3.56 -62.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602527463.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.083 kcal (2) G-P(sol) polarization free energy of solvation -66.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds