Wall clock time and date at job start Mon Mar 30 2020 01:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47285 * 2 1 4 4 H 1.09001 * 109.46967 * 303.38402 * 3 2 1 5 5 C 1.52999 * 109.47443 * 183.38495 * 3 2 1 6 6 C 1.50698 * 109.47025 * 174.99993 * 5 3 2 7 7 C 1.38239 * 120.00252 * 269.72147 * 6 5 3 8 8 C 1.38231 * 119.99925 * 179.76723 * 7 6 5 9 9 C 1.38231 * 120.00248 * 0.51173 * 8 7 6 10 10 C 1.38233 * 120.00050 * 359.74354 * 9 8 7 11 11 C 1.38233 * 119.99819 * 0.02562 * 10 9 8 12 12 N 1.46907 * 109.47165 * 63.38242 * 3 2 1 13 13 C 1.46896 * 110.99582 * 55.88057 * 12 3 2 14 14 C 1.53005 * 109.46845 * 174.92303 * 13 12 3 15 15 H 1.09001 * 109.46861 * 304.99356 * 14 13 12 16 16 C 1.52996 * 109.47613 * 64.99898 * 14 13 12 17 17 C 1.53001 * 109.46780 * 184.99912 * 14 13 12 18 18 C 1.50704 * 109.46655 * 174.99585 * 17 14 13 19 19 H 1.07995 * 120.00379 * 359.97438 * 18 17 14 20 20 C 1.37878 * 119.99697 * 180.02562 * 18 17 14 21 21 N 1.31519 * 120.00153 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00104 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47239 * 90.00350 * 22 20 18 24 24 H 1.48510 * 109.47053 * 210.00182 * 22 20 18 25 25 H 1.48498 * 109.47285 * 329.99810 * 22 20 18 26 26 H 1.09002 * 109.46945 * 294.40663 * 1 2 3 27 27 H 1.09003 * 109.46903 * 54.40464 * 1 2 3 28 28 H 1.08996 * 109.46642 * 174.40730 * 1 2 3 29 29 H 1.09004 * 109.47302 * 240.00374 * 2 1 3 30 30 H 1.08999 * 109.47357 * 119.99699 * 2 1 3 31 31 H 1.08998 * 109.47091 * 294.99599 * 5 3 2 32 32 H 1.08999 * 109.47163 * 55.00116 * 5 3 2 33 33 H 1.07997 * 119.99526 * 0.02562 * 7 6 5 34 34 H 1.08006 * 119.99867 * 180.23240 * 8 7 6 35 35 H 1.08003 * 120.00061 * 179.72809 * 9 8 7 36 36 H 1.07998 * 120.00549 * 179.97438 * 10 9 8 37 37 H 1.07999 * 120.00010 * 179.97438 * 11 10 9 38 38 H 1.00898 * 111.00178 * 179.83596 * 12 3 2 39 39 H 1.09004 * 109.47412 * 294.91636 * 13 12 3 40 40 H 1.08995 * 109.47411 * 54.91890 * 13 12 3 41 41 H 1.09002 * 109.47021 * 59.99512 * 16 14 13 42 42 H 1.09000 * 109.47051 * 180.02562 * 16 14 13 43 43 H 1.09003 * 109.46689 * 300.00329 * 16 14 13 44 44 H 1.08996 * 109.47340 * 294.99392 * 17 14 13 45 45 H 1.09003 * 109.47539 * 55.00203 * 17 14 13 46 46 H 0.96993 * 120.00047 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6280 1.9735 -0.8581 5 6 3.5677 1.4434 -0.0852 6 6 4.0630 2.8612 -0.2089 7 6 4.2293 3.4288 -1.4584 8 6 4.6791 4.7310 -1.5717 9 6 4.9728 5.4621 -0.4359 10 6 4.8115 4.8929 0.8135 11 6 4.3572 3.5923 0.9269 12 7 1.6182 2.1111 1.2383 13 6 2.0740 1.3667 2.4198 14 6 1.7277 2.1555 3.6843 15 1 2.1485 3.1585 3.6135 16 6 0.2072 2.2493 3.8266 17 6 2.3113 1.4427 4.9058 18 6 2.0769 2.2810 6.1361 19 1 1.5635 3.2276 6.0548 20 6 2.5188 1.8398 7.3653 21 7 2.3139 2.5711 8.4391 22 14 3.4075 0.2027 7.5059 23 1 4.8672 0.4156 7.3352 24 1 3.1466 -0.3889 8.8429 25 1 2.9151 -0.7200 6.4517 26 1 -0.3633 0.4247 0.9359 27 1 -0.3633 0.5982 -0.8357 28 1 -0.3632 -1.0228 -0.1002 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.9820 0.9911 0.8158 32 1 3.8833 0.8709 -0.9573 33 1 4.0038 2.8562 -2.3458 34 1 4.8054 5.1757 -2.5478 35 1 5.3284 6.4781 -0.5246 36 1 5.0413 5.4639 1.7009 37 1 4.2316 3.1473 1.9030 38 1 1.9454 3.0652 1.2635 39 1 1.5797 0.3957 2.4506 40 1 3.1531 1.2235 2.3651 41 1 -0.2136 1.2462 3.8974 42 1 -0.0394 2.8116 4.7272 43 1 -0.2085 2.7571 2.9563 44 1 1.8257 0.4745 5.0280 45 1 3.3822 1.2968 4.7643 46 1 2.6245 2.2605 9.3039 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602531812.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:02 Heat of formation + Delta-G solvation = -5.415969 kcal Electronic energy + Delta-G solvation = -21747.532532 eV Core-core repulsion = 18828.657003 eV Total energy + Delta-G solvation = -2918.875528 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.75153 -37.83353 -35.20390 -32.44926 -32.33772 -31.07128 -30.72996 -28.15974 -27.14711 -25.40031 -23.86420 -22.60323 -22.39812 -21.17608 -19.59253 -19.22289 -16.86994 -16.72275 -15.84183 -15.43281 -15.20911 -14.62878 -14.43984 -14.03690 -13.83657 -13.44917 -13.40295 -13.20406 -12.83417 -12.70243 -12.40809 -12.20297 -11.93146 -11.73947 -11.56858 -11.44824 -11.05539 -10.96184 -10.92135 -10.73988 -10.61165 -10.50809 -10.21685 -9.89546 -9.62290 -9.38898 -9.03033 -8.96231 -8.80224 -8.49913 -8.02084 -6.00380 -3.97037 1.30464 1.35841 3.31766 3.39624 3.43262 3.73247 4.45745 4.48097 4.61911 4.79151 4.93371 5.02318 5.09447 5.18697 5.22759 5.32368 5.33403 5.47471 5.55994 5.59935 5.64627 5.69723 5.77362 5.88283 5.92900 6.02204 6.04130 6.06509 6.10989 6.31898 6.35673 6.42145 6.46623 6.50049 6.52786 6.60461 6.62445 6.89667 6.97420 7.07230 7.17449 7.31230 7.37107 7.50806 7.69511 7.85140 8.59532 9.05791 9.62776 11.13131 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.015149 B = 0.004957 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.897300 B = 5647.257083 C = 6704.548042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.119 4.119 3 C 0.095 3.905 4 H 0.078 0.922 5 C -0.123 4.123 6 C -0.078 4.078 7 C -0.120 4.120 8 C -0.121 4.121 9 C -0.128 4.128 10 C -0.112 4.112 11 C -0.118 4.118 12 N -0.675 5.675 13 C 0.054 3.946 14 C -0.075 4.075 15 H 0.057 0.943 16 C -0.124 4.124 17 C -0.008 4.008 18 C -0.511 4.511 19 H 0.073 0.927 20 C 0.065 3.935 21 N -0.905 5.905 22 Si 0.877 3.123 23 H -0.279 1.279 24 H -0.289 1.289 25 H -0.266 1.266 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.043 0.957 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.340 0.660 39 H 0.070 0.930 40 H 0.026 0.974 41 H 0.039 0.961 42 H 0.057 0.943 43 H 0.044 0.956 44 H 0.015 0.985 45 H 0.006 0.994 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.705 -0.520 -21.458 21.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.156 4.156 3 C -0.016 4.016 4 H 0.096 0.904 5 C -0.162 4.162 6 C -0.078 4.078 7 C -0.138 4.138 8 C -0.139 4.139 9 C -0.146 4.146 10 C -0.130 4.130 11 C -0.136 4.136 12 N -0.306 5.306 13 C -0.075 4.075 14 C -0.094 4.094 15 H 0.075 0.925 16 C -0.181 4.181 17 C -0.046 4.046 18 C -0.549 4.549 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.545 5.545 22 Si 0.704 3.296 23 H -0.205 1.205 24 H -0.215 1.215 25 H -0.191 1.191 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.159 0.841 39 H 0.088 0.912 40 H 0.044 0.956 41 H 0.058 0.942 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.033 0.967 45 H 0.025 0.975 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.086 -0.808 -21.260 21.378 hybrid contribution 1.625 -0.590 0.273 1.750 sum 3.710 -1.398 -20.987 21.359 Atomic orbital electron populations 1.21629 0.95051 1.00338 1.02848 1.21619 0.97008 0.95347 1.01653 1.21618 0.90514 0.95525 0.93926 0.90412 1.21454 0.98574 0.92915 1.03256 1.19873 0.98652 0.96116 0.93164 1.20996 1.00551 0.95459 0.96830 1.21097 0.99829 0.94592 0.98397 1.21137 1.00874 0.99848 0.92718 1.21222 0.98764 0.95372 0.97653 1.21250 0.99093 0.94685 0.98560 1.60714 1.63145 1.05815 1.00937 1.22286 0.96993 0.98210 0.89967 1.21023 0.96756 0.98497 0.93076 0.92457 1.21592 0.95192 1.00685 1.00655 1.19604 0.94963 0.96338 0.93715 1.21137 1.37129 1.06399 0.90262 0.90854 1.25023 0.95757 0.96871 0.95891 1.69915 1.47550 1.38120 0.98902 0.86828 0.80297 0.85090 0.77338 1.20485 1.21492 1.19072 0.91245 0.93296 0.93799 0.92379 0.91583 0.90372 0.90913 0.86436 0.86415 0.86342 0.85861 0.85672 0.84068 0.91189 0.95608 0.94222 0.92352 0.93729 0.96664 0.97534 0.92868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.72 37.16 0.36 -1.21 16 2 C -0.12 -1.29 5.04 -26.73 -0.13 -1.43 16 3 C 0.09 1.08 2.57 -67.71 -0.17 0.90 16 4 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 5 C -0.12 -1.35 4.71 -27.88 -0.13 -1.48 16 6 C -0.08 -0.91 4.72 -104.62 -0.49 -1.40 16 7 C -0.12 -1.27 9.70 -39.58 -0.38 -1.65 16 8 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 9 C -0.13 -1.35 10.05 -39.59 -0.40 -1.75 16 10 C -0.11 -1.33 10.05 -39.58 -0.40 -1.73 16 11 C -0.12 -1.50 8.27 -39.58 -0.33 -1.83 16 12 N -0.68 -9.13 5.38 -106.72 -0.57 -9.71 16 13 C 0.05 0.85 4.07 -3.82 -0.02 0.83 16 14 C -0.07 -1.44 2.43 -90.62 -0.22 -1.66 16 15 H 0.06 1.14 8.12 -51.93 -0.42 0.72 16 16 C -0.12 -2.36 8.89 37.16 0.33 -2.03 16 17 C -0.01 -0.20 3.52 -27.88 -0.10 -0.29 16 18 C -0.51 -14.39 8.96 -34.44 -0.31 -14.70 16 19 H 0.07 2.22 7.30 -52.49 -0.38 1.84 16 20 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 21 N -0.91 -28.00 13.96 55.43 0.77 -27.23 16 22 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 26 H 0.07 0.90 7.87 -51.93 -0.41 0.49 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.79 6.26 -51.93 -0.33 0.47 16 31 H 0.08 0.95 6.11 -51.93 -0.32 0.64 16 32 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 35 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 36 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.13 1.73 7.36 -52.49 -0.39 1.35 16 38 H 0.34 4.76 6.74 -39.29 -0.26 4.49 16 39 H 0.07 1.12 6.47 -51.93 -0.34 0.79 16 40 H 0.03 0.41 5.56 -51.93 -0.29 0.12 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.06 1.24 6.95 -51.93 -0.36 0.88 16 43 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 44 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 45 H 0.01 0.15 7.57 -51.93 -0.39 -0.24 16 46 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 356.36 15.07 5.37 5.37 Total: -1.00 -29.77 356.36 -10.04 -39.81 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -8.05 Total: 3.82 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: -2.89 Total: -29.26 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.20 Total: -36.94 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.77 -10.04 -39.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602531812.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.392 kcal (2) G-P(sol) polarization free energy of solvation -29.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds