Wall clock time and date at job start Mon Mar 30 2020 01:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47439 * 2 1 4 4 H 1.09002 * 109.47207 * 56.21102 * 3 2 1 5 5 C 1.53002 * 109.47423 * 176.20941 * 3 2 1 6 6 C 1.50698 * 109.47230 * 184.99776 * 5 3 2 7 7 C 1.38242 * 119.99777 * 90.00029 * 6 5 3 8 8 C 1.38231 * 119.99516 * 179.72597 * 7 6 5 9 9 C 1.38230 * 120.00414 * 0.25793 * 8 7 6 10 10 C 1.38230 * 120.00112 * 359.97438 * 9 8 7 11 11 C 1.38234 * 120.00024 * 0.02562 * 10 9 8 12 12 N 1.46897 * 109.46947 * 296.21281 * 3 2 1 13 13 C 1.46902 * 111.00233 * 306.00893 * 12 3 2 14 14 C 1.52997 * 109.47279 * 185.45057 * 13 12 3 15 15 H 1.08997 * 109.47274 * 54.99904 * 14 13 12 16 16 C 1.52995 * 109.46962 * 294.99771 * 14 13 12 17 17 C 1.53004 * 109.47033 * 174.99805 * 14 13 12 18 18 C 1.50699 * 109.47116 * 184.99872 * 17 14 13 19 19 H 1.07999 * 120.00341 * 359.97438 * 18 17 14 20 20 C 1.37878 * 119.99636 * 180.02562 * 18 17 14 21 21 N 1.31510 * 120.00186 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99708 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47219 * 59.99367 * 22 20 18 24 24 H 1.48492 * 109.47181 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46830 * 299.99767 * 22 20 18 26 26 H 1.09000 * 109.47265 * 176.76750 * 1 2 3 27 27 H 1.09003 * 109.47138 * 296.76696 * 1 2 3 28 28 H 1.08997 * 109.46754 * 56.76780 * 1 2 3 29 29 H 1.09001 * 109.47189 * 239.99361 * 2 1 3 30 30 H 1.09009 * 109.46913 * 119.99888 * 2 1 3 31 31 H 1.09002 * 109.46649 * 64.99998 * 5 3 2 32 32 H 1.09000 * 109.47057 * 304.99931 * 5 3 2 33 33 H 1.08002 * 119.99691 * 0.02562 * 7 6 5 34 34 H 1.08010 * 119.99515 * 180.28094 * 8 7 6 35 35 H 1.08004 * 119.99928 * 180.02562 * 9 8 7 36 36 H 1.08001 * 120.00307 * 180.02562 * 10 9 8 37 37 H 1.08000 * 120.00426 * 180.02562 * 11 10 9 38 38 H 1.00901 * 111.00104 * 69.96457 * 12 3 2 39 39 H 1.09002 * 109.46417 * 305.44948 * 13 12 3 40 40 H 1.08999 * 109.46653 * 65.44421 * 13 12 3 41 41 H 1.09003 * 109.47356 * 60.00157 * 16 14 13 42 42 H 1.09003 * 109.47243 * 180.02562 * 16 14 13 43 43 H 1.08997 * 109.47235 * 300.00158 * 16 14 13 44 44 H 1.08998 * 109.47099 * 305.00431 * 17 14 13 45 45 H 1.09003 * 109.46910 * 64.99805 * 17 14 13 46 46 H 0.97003 * 119.99487 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6224 1.9755 0.8541 5 6 3.5671 1.4435 0.0954 6 6 4.0618 2.8616 0.2190 7 6 4.2142 3.4340 1.4681 8 6 4.6734 4.7329 1.5816 9 6 4.9749 5.4612 0.4461 10 6 4.8179 4.8904 -0.8031 11 6 4.3588 3.5915 -0.9167 12 7 1.6266 2.1080 -1.2425 13 6 2.0514 1.3376 -2.4190 14 6 1.7248 2.1251 -3.6895 15 1 2.1788 3.1142 -3.6306 16 6 0.2076 2.2676 -3.8253 17 6 2.2783 1.3815 -4.9068 18 6 2.0653 2.2150 -6.1441 19 1 1.5830 3.1785 -6.0698 20 6 2.4852 1.7471 -7.3712 21 7 3.0720 0.5736 -7.4617 22 14 2.2219 2.7806 -8.9048 23 1 2.9283 4.0781 -8.7546 24 1 2.7589 2.0589 -10.0862 25 1 0.7694 3.0266 -9.0925 26 1 -0.3634 -1.0260 -0.0579 27 1 -0.3633 0.4628 0.9176 28 1 -0.3633 0.5632 -0.8596 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8901 31 1 3.9874 0.9889 -0.8018 32 1 3.8769 0.8730 0.9710 33 1 3.9792 2.8647 2.3552 34 1 4.7968 5.1786 2.5577 35 1 5.3340 6.4759 0.5349 36 1 5.0539 5.4593 -1.6902 37 1 4.2365 3.1454 -1.8927 38 1 0.6300 2.2655 -1.2540 39 1 3.1255 1.1593 -2.3680 40 1 1.5252 0.3832 -2.4376 41 1 -0.1867 2.7973 -2.9580 42 1 -0.0252 2.8282 -4.7306 43 1 -0.2464 1.2784 -3.8841 44 1 3.3444 1.2017 -4.7688 45 1 1.7604 0.4287 -5.0169 46 1 3.3677 0.2447 -8.3250 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602531814.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:07 Heat of formation + Delta-G solvation = -7.325658 kcal Electronic energy + Delta-G solvation = -21656.828765 eV Core-core repulsion = 18737.870426 eV Total energy + Delta-G solvation = -2918.958338 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.42491 -37.87988 -35.09625 -32.50867 -32.21877 -30.72935 -30.53067 -27.99648 -26.70512 -25.54570 -23.84911 -22.69788 -22.32428 -21.03315 -19.66286 -18.84823 -16.58623 -16.52768 -15.90762 -15.18066 -14.98538 -14.67748 -14.45113 -14.06647 -13.82536 -13.50372 -13.18203 -13.00835 -12.58344 -12.51453 -12.28574 -12.15107 -11.85562 -11.56729 -11.48016 -11.34589 -10.98681 -10.86475 -10.79280 -10.73778 -10.67665 -10.45326 -10.30753 -10.07899 -9.65894 -9.10129 -8.94921 -8.69416 -8.45033 -8.30721 -7.98457 -5.95701 -3.96620 1.57262 1.64827 3.35567 3.40002 3.42573 3.99860 4.44571 4.53701 4.79686 5.01542 5.04838 5.10799 5.16290 5.22019 5.30536 5.40165 5.47180 5.62485 5.67369 5.69427 5.72910 5.80077 5.89826 5.92803 5.93042 6.00187 6.11701 6.15725 6.20403 6.26232 6.32363 6.42670 6.53360 6.61739 6.64661 6.76415 6.91714 7.02276 7.15044 7.21703 7.24355 7.47377 7.71521 7.74622 7.89393 8.04882 8.49120 9.09673 9.66716 11.15730 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.015376 B = 0.004669 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.595310 B = 5996.017216 C = 7243.793855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.163 4.163 3 C 0.095 3.905 4 H 0.075 0.925 5 C -0.077 4.077 6 C -0.061 4.061 7 C -0.126 4.126 8 C -0.129 4.129 9 C -0.131 4.131 10 C -0.121 4.121 11 C -0.085 4.085 12 N -0.677 5.677 13 C 0.059 3.941 14 C -0.082 4.082 15 H 0.063 0.937 16 C -0.132 4.132 17 C 0.029 3.971 18 C -0.512 4.512 19 H 0.055 0.945 20 C 0.056 3.944 21 N -0.897 5.897 22 Si 0.888 3.112 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.278 1.278 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.127 0.873 38 H 0.338 0.662 39 H 0.067 0.933 40 H 0.027 0.973 41 H 0.032 0.968 42 H 0.060 0.940 43 H 0.039 0.961 44 H 0.013 0.987 45 H 0.013 0.987 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.231 2.911 18.758 18.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.202 4.202 3 C -0.016 4.016 4 H 0.093 0.907 5 C -0.115 4.115 6 C -0.062 4.062 7 C -0.144 4.144 8 C -0.147 4.147 9 C -0.149 4.149 10 C -0.139 4.139 11 C -0.103 4.103 12 N -0.308 5.308 13 C -0.070 4.070 14 C -0.101 4.101 15 H 0.082 0.918 16 C -0.190 4.190 17 C -0.009 4.009 18 C -0.551 4.551 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.537 5.537 22 Si 0.717 3.283 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.145 0.855 38 H 0.157 0.843 39 H 0.085 0.915 40 H 0.045 0.955 41 H 0.051 0.949 42 H 0.079 0.921 43 H 0.058 0.942 44 H 0.032 0.968 45 H 0.031 0.969 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.391 3.211 18.612 18.891 hybrid contribution -0.778 -0.248 -0.936 1.243 sum -0.387 2.963 17.675 17.926 Atomic orbital electron populations 1.21755 0.95850 1.01705 1.01631 1.22299 0.96329 0.98956 1.02606 1.21525 0.94245 0.92117 0.93724 0.90667 1.20724 0.95115 0.93153 1.02506 1.19680 0.97662 0.95936 0.92873 1.20955 1.01165 0.95483 0.96814 1.20989 1.00783 0.94803 0.98093 1.21053 1.01422 0.99559 0.92871 1.21185 0.99678 0.95716 0.97291 1.21138 0.96407 0.94000 0.98771 1.60688 1.20152 1.48924 1.01034 1.22212 1.00005 0.94826 0.89936 1.21195 0.95412 0.99560 0.93909 0.91825 1.21718 0.96642 1.00312 1.00299 1.19097 0.95764 0.95218 0.90776 1.21203 1.38068 1.03751 0.92031 0.92683 1.25005 0.95427 0.95027 0.98998 1.69955 1.40614 1.18405 1.24717 0.86716 0.78446 0.80452 0.82733 1.20291 1.21399 1.20337 0.92815 0.92957 0.92546 0.91044 0.92017 0.90495 0.91291 0.86886 0.86880 0.86835 0.86357 0.85537 0.84310 0.91492 0.95465 0.94947 0.92100 0.94209 0.96829 0.96902 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.74 37.16 0.36 -1.23 16 2 C -0.16 -1.79 4.99 -26.73 -0.13 -1.93 16 3 C 0.09 1.11 2.53 -67.72 -0.17 0.94 16 4 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 5 C -0.08 -0.92 4.75 -27.88 -0.13 -1.05 16 6 C -0.06 -0.80 4.96 -104.62 -0.52 -1.32 16 7 C -0.13 -1.49 9.70 -39.58 -0.38 -1.87 16 8 C -0.13 -1.47 10.05 -39.59 -0.40 -1.87 16 9 C -0.13 -1.57 10.05 -39.59 -0.40 -1.97 16 10 C -0.12 -1.62 10.05 -39.59 -0.40 -2.02 16 11 C -0.09 -1.23 9.30 -39.58 -0.37 -1.60 16 12 N -0.68 -9.37 5.60 -106.73 -0.60 -9.97 16 13 C 0.06 0.96 4.16 -3.82 -0.02 0.95 16 14 C -0.08 -1.63 2.55 -90.62 -0.23 -1.86 16 15 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 16 C -0.13 -2.45 8.77 37.16 0.33 -2.13 16 17 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 18 C -0.51 -14.26 8.41 -34.44 -0.29 -14.55 16 19 H 0.05 1.50 7.06 -52.49 -0.37 1.13 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 21 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 22 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.64 6.84 -51.93 -0.36 0.29 16 29 H 0.07 0.90 6.23 -51.93 -0.32 0.57 16 30 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.08 1.01 6.18 -51.93 -0.32 0.69 16 32 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 33 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.11 1.03 8.06 -52.48 -0.42 0.61 16 35 H 0.11 1.12 8.06 -52.48 -0.42 0.70 16 36 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.13 2.00 7.71 -52.49 -0.40 1.60 16 38 H 0.34 4.56 5.91 -39.29 -0.23 4.33 16 39 H 0.07 1.14 5.87 -51.93 -0.30 0.84 16 40 H 0.03 0.46 6.47 -51.93 -0.34 0.12 16 41 H 0.03 0.51 6.81 -51.93 -0.35 0.15 16 42 H 0.06 1.23 6.95 -51.93 -0.36 0.87 16 43 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 359.40 15.07 5.42 5.42 Total: -1.00 -29.30 359.40 -10.43 -39.72 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -7.99 Total: 3.71 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: -2.97 Total: -29.40 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.14 Total: -36.16 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.30 -10.43 -39.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602531814.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.399 kcal (2) G-P(sol) polarization free energy of solvation -29.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds