Wall clock time and date at job start Mon Mar 30 2020 01:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47439 * 2 1 4 4 H 1.09002 * 109.47207 * 56.21102 * 3 2 1 5 5 C 1.53002 * 109.47423 * 176.20941 * 3 2 1 6 6 C 1.50698 * 109.47230 * 184.99776 * 5 3 2 7 7 C 1.38242 * 119.99777 * 90.00029 * 6 5 3 8 8 C 1.38231 * 119.99516 * 179.72597 * 7 6 5 9 9 C 1.38230 * 120.00414 * 0.25793 * 8 7 6 10 10 C 1.38230 * 120.00112 * 359.97438 * 9 8 7 11 11 C 1.38234 * 120.00024 * 0.02562 * 10 9 8 12 12 N 1.46897 * 109.46947 * 296.21281 * 3 2 1 13 13 C 1.46902 * 111.00233 * 306.00893 * 12 3 2 14 14 C 1.52997 * 109.47279 * 185.45057 * 13 12 3 15 15 H 1.08997 * 109.47274 * 54.99904 * 14 13 12 16 16 C 1.52995 * 109.46962 * 294.99771 * 14 13 12 17 17 C 1.53004 * 109.47033 * 174.99805 * 14 13 12 18 18 C 1.50699 * 109.47116 * 184.99872 * 17 14 13 19 19 H 1.07999 * 120.00341 * 359.97438 * 18 17 14 20 20 C 1.37878 * 119.99636 * 180.02562 * 18 17 14 21 21 N 1.31510 * 120.00186 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99708 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47219 * 59.99367 * 22 20 18 24 24 H 1.48492 * 109.47181 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46830 * 299.99767 * 22 20 18 26 26 H 1.09000 * 109.47265 * 176.76750 * 1 2 3 27 27 H 1.09003 * 109.47138 * 296.76696 * 1 2 3 28 28 H 1.08997 * 109.46754 * 56.76780 * 1 2 3 29 29 H 1.09001 * 109.47189 * 239.99361 * 2 1 3 30 30 H 1.09009 * 109.46913 * 119.99888 * 2 1 3 31 31 H 1.09002 * 109.46649 * 64.99998 * 5 3 2 32 32 H 1.09000 * 109.47057 * 304.99931 * 5 3 2 33 33 H 1.08002 * 119.99691 * 0.02562 * 7 6 5 34 34 H 1.08010 * 119.99515 * 180.28094 * 8 7 6 35 35 H 1.08004 * 119.99928 * 180.02562 * 9 8 7 36 36 H 1.08001 * 120.00307 * 180.02562 * 10 9 8 37 37 H 1.08000 * 120.00426 * 180.02562 * 11 10 9 38 38 H 1.00901 * 111.00104 * 69.96457 * 12 3 2 39 39 H 1.09002 * 109.46417 * 305.44948 * 13 12 3 40 40 H 1.08999 * 109.46653 * 65.44421 * 13 12 3 41 41 H 1.09003 * 109.47356 * 60.00157 * 16 14 13 42 42 H 1.09003 * 109.47243 * 180.02562 * 16 14 13 43 43 H 1.08997 * 109.47235 * 300.00158 * 16 14 13 44 44 H 1.08998 * 109.47099 * 305.00431 * 17 14 13 45 45 H 1.09003 * 109.46910 * 64.99805 * 17 14 13 46 46 H 0.97003 * 119.99487 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6224 1.9755 0.8541 5 6 3.5671 1.4435 0.0954 6 6 4.0618 2.8616 0.2190 7 6 4.2142 3.4340 1.4681 8 6 4.6734 4.7329 1.5816 9 6 4.9749 5.4612 0.4461 10 6 4.8179 4.8904 -0.8031 11 6 4.3588 3.5915 -0.9167 12 7 1.6266 2.1080 -1.2425 13 6 2.0514 1.3376 -2.4190 14 6 1.7248 2.1251 -3.6895 15 1 2.1788 3.1142 -3.6306 16 6 0.2076 2.2676 -3.8253 17 6 2.2783 1.3815 -4.9068 18 6 2.0653 2.2150 -6.1441 19 1 1.5830 3.1785 -6.0698 20 6 2.4852 1.7471 -7.3712 21 7 3.0720 0.5736 -7.4617 22 14 2.2219 2.7806 -8.9048 23 1 2.9283 4.0781 -8.7546 24 1 2.7589 2.0589 -10.0862 25 1 0.7694 3.0266 -9.0925 26 1 -0.3634 -1.0260 -0.0579 27 1 -0.3633 0.4628 0.9176 28 1 -0.3633 0.5632 -0.8596 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8901 31 1 3.9874 0.9889 -0.8018 32 1 3.8769 0.8730 0.9710 33 1 3.9792 2.8647 2.3552 34 1 4.7968 5.1786 2.5577 35 1 5.3340 6.4759 0.5349 36 1 5.0539 5.4593 -1.6902 37 1 4.2365 3.1454 -1.8927 38 1 0.6300 2.2655 -1.2540 39 1 3.1255 1.1593 -2.3680 40 1 1.5252 0.3832 -2.4376 41 1 -0.1867 2.7973 -2.9580 42 1 -0.0252 2.8282 -4.7306 43 1 -0.2464 1.2784 -3.8841 44 1 3.3444 1.2017 -4.7688 45 1 1.7604 0.4287 -5.0169 46 1 3.3677 0.2447 -8.3250 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602531814.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:06 Heat of formation + Delta-G solvation = -21.757948 kcal Electronic energy + Delta-G solvation = -21657.454596 eV Core-core repulsion = 18737.870426 eV Total energy + Delta-G solvation = -2919.584169 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.43157 -39.00501 -36.70598 -34.42706 -33.21478 -31.95095 -31.56908 -29.23087 -28.42659 -27.02208 -24.95962 -24.38554 -23.29699 -21.97810 -21.06974 -20.19100 -18.52079 -17.49419 -17.28997 -16.64584 -16.16782 -15.92713 -15.66532 -15.26058 -15.08816 -14.78924 -14.35957 -14.13702 -14.07987 -13.84974 -13.49110 -13.36751 -13.29683 -13.00501 -12.79904 -12.67212 -12.44839 -12.38986 -12.23182 -12.01120 -11.81663 -11.70484 -11.61850 -11.54148 -11.30500 -10.99663 -10.89062 -10.52401 -9.66858 -9.42782 -9.12871 -8.16856 -6.25729 0.61747 0.67418 1.39289 1.41909 1.49560 2.41993 3.03151 3.16467 3.36571 3.84827 4.05594 4.14601 4.20379 4.24666 4.26785 4.33102 4.39193 4.43126 4.47702 4.57159 4.72438 4.76967 4.77939 4.81911 4.88121 4.90618 4.97960 5.02885 5.12566 5.12796 5.25201 5.29312 5.33802 5.35073 5.43119 5.43482 5.50044 5.59037 5.71364 5.78243 5.83182 5.91662 5.93323 6.21919 6.29216 6.35581 6.63748 6.90103 7.42370 8.94905 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.015376 B = 0.004669 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.595310 B = 5996.017216 C = 7243.793855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.158 4.158 3 C 0.099 3.901 4 H 0.091 0.909 5 C -0.076 4.076 6 C -0.069 4.069 7 C -0.127 4.127 8 C -0.127 4.127 9 C -0.135 4.135 10 C -0.138 4.138 11 C -0.110 4.110 12 N -0.676 5.676 13 C 0.079 3.921 14 C -0.072 4.072 15 H 0.051 0.949 16 C -0.124 4.124 17 C 0.036 3.964 18 C -0.528 4.528 19 H 0.059 0.941 20 C 0.000 4.000 21 N -0.935 5.935 22 Si 0.958 3.042 23 H -0.269 1.269 24 H -0.284 1.284 25 H -0.267 1.267 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.043 0.957 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.135 0.865 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.342 0.658 39 H 0.055 0.945 40 H 0.025 0.975 41 H 0.065 0.935 42 H 0.041 0.959 43 H 0.039 0.961 44 H -0.016 1.016 45 H -0.012 1.012 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.096 4.062 20.998 21.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.197 4.197 3 C -0.011 4.011 4 H 0.109 0.891 5 C -0.113 4.113 6 C -0.069 4.069 7 C -0.145 4.145 8 C -0.145 4.145 9 C -0.153 4.153 10 C -0.156 4.156 11 C -0.128 4.128 12 N -0.308 5.308 13 C -0.050 4.050 14 C -0.091 4.091 15 H 0.069 0.931 16 C -0.181 4.181 17 C -0.002 4.002 18 C -0.566 4.566 19 H 0.077 0.923 20 C -0.198 4.198 21 N -0.576 5.576 22 Si 0.783 3.217 23 H -0.194 1.194 24 H -0.210 1.210 25 H -0.192 1.192 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.153 0.847 36 H 0.135 0.865 37 H 0.116 0.884 38 H 0.162 0.838 39 H 0.073 0.927 40 H 0.043 0.957 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.002 0.998 45 H 0.006 0.994 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.485 4.372 20.866 21.325 hybrid contribution -0.465 -0.607 -1.569 1.746 sum -0.950 3.765 19.297 19.684 Atomic orbital electron populations 1.21747 0.95206 1.01935 1.01904 1.22243 0.96832 0.98164 1.02505 1.21571 0.94135 0.92646 0.92723 0.89088 1.20736 0.95154 0.92891 1.02558 1.19802 0.97834 0.96250 0.93045 1.21264 1.00365 0.95916 0.96930 1.21385 0.99382 0.94624 0.99133 1.21334 1.00978 1.00650 0.92353 1.21312 1.00396 0.95581 0.98356 1.21046 0.98550 0.94922 0.98271 1.60592 1.20455 1.48817 1.00944 1.21811 0.99296 0.94257 0.89630 1.20980 0.96287 0.98440 0.93401 0.93069 1.21615 0.95213 1.00443 1.00825 1.18972 0.93822 0.94483 0.92883 1.21603 1.37807 1.04084 0.93149 0.92329 1.25917 0.95074 0.96231 1.02552 1.70094 1.41674 1.20192 1.25599 0.85608 0.78862 0.78808 0.78438 1.19412 1.20962 1.19196 0.92508 0.91321 0.93744 0.93164 0.90099 0.92621 0.88932 0.84272 0.83955 0.84712 0.86511 0.88363 0.83768 0.92698 0.95683 0.91645 0.94028 0.94219 0.99812 0.99412 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.74 71.98 0.70 -2.14 16 2 C -0.16 -3.22 4.99 30.59 0.15 -3.06 16 3 C 0.10 2.17 2.53 44.91 0.11 2.28 16 4 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 5 C -0.08 -1.74 4.75 29.85 0.14 -1.59 16 6 C -0.07 -1.74 4.96 -19.86 -0.10 -1.84 16 7 C -0.13 -2.65 9.70 22.27 0.22 -2.43 16 8 C -0.13 -2.54 10.05 22.27 0.22 -2.31 16 9 C -0.14 -3.02 10.05 22.27 0.22 -2.80 16 10 C -0.14 -3.76 10.05 22.27 0.22 -3.53 16 11 C -0.11 -3.27 9.30 22.27 0.21 -3.06 16 12 N -0.68 -18.34 5.60 -491.58 -2.75 -21.10 16 13 C 0.08 2.69 4.16 86.30 0.36 3.05 16 14 C -0.07 -2.98 2.55 -10.79 -0.03 -3.01 16 15 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 16 C -0.12 -4.58 8.77 71.98 0.63 -3.95 16 17 C 0.04 1.92 4.45 29.85 0.13 2.05 16 18 C -0.53 -30.32 8.41 25.60 0.22 -30.10 16 19 H 0.06 3.25 7.06 -2.91 -0.02 3.23 16 20 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 21 N -0.93 -57.80 13.29 21.45 0.28 -57.51 16 22 Si 0.96 45.09 29.54 68.60 2.03 47.11 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 24 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.04 0.94 6.84 -2.39 -0.02 0.92 16 29 H 0.05 1.24 6.23 -2.39 -0.01 1.23 16 30 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.06 1.51 6.18 -2.39 -0.01 1.50 16 32 H 0.09 1.66 8.09 -2.39 -0.02 1.64 16 33 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 34 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 35 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 36 H 0.12 3.04 8.06 -2.91 -0.02 3.02 16 37 H 0.10 3.40 7.71 -2.91 -0.02 3.38 16 38 H 0.34 8.72 5.91 -89.69 -0.53 8.19 16 39 H 0.05 2.00 5.87 -2.39 -0.01 1.99 16 40 H 0.03 0.86 6.47 -2.39 -0.02 0.85 16 41 H 0.06 1.98 6.81 -2.39 -0.02 1.96 16 42 H 0.04 1.68 6.95 -2.39 -0.02 1.66 16 43 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 44 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 45 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 46 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -65.06 359.40 3.84 -61.22 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 0.40 Total: 22.30 kcal Atomic # 6 Polarization: -55.90 SS G_CDS: 3.88 Total: -52.02 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -2.47 Total: -78.61 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -65.06 3.84 -61.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602531814.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.462 kcal (2) G-P(sol) polarization free energy of solvation -65.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds