Wall clock time and date at job start Mon Mar 30 2020 01:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47168 * 2 1 4 4 C 1.53001 * 109.47361 * 239.99505 * 2 1 3 5 5 C 1.50704 * 109.46732 * 64.99956 * 4 2 1 6 6 H 1.08000 * 120.00558 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99955 * 179.97438 * 5 4 2 8 8 N 1.31523 * 119.99604 * 0.02562 * 7 5 4 9 9 Si 1.86788 * 120.00135 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47384 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47402 * 120.00246 * 9 7 5 12 12 H 1.48503 * 109.47237 * 239.99911 * 9 7 5 13 13 C 1.53007 * 109.47147 * 119.99643 * 2 1 3 14 14 N 1.46900 * 109.46744 * 295.00100 * 13 2 1 15 15 C 1.46899 * 110.99567 * 179.97438 * 14 13 2 16 16 H 1.09001 * 109.47354 * 325.00142 * 15 14 13 17 17 C 1.52997 * 109.47254 * 85.00010 * 15 14 13 18 18 C 1.53006 * 109.47163 * 205.00122 * 15 14 13 19 19 H 1.08998 * 109.46505 * 299.99681 * 18 15 14 20 20 C 1.52997 * 109.47127 * 59.99810 * 18 15 14 21 21 C 1.50697 * 109.47239 * 180.02562 * 18 15 14 22 22 C 1.38235 * 120.00046 * 299.72390 * 21 18 15 23 23 C 1.38231 * 120.00363 * 179.78984 * 22 21 18 24 24 C 1.38230 * 119.99735 * 0.44047 * 23 22 21 25 25 C 1.38239 * 120.00093 * 359.81049 * 24 23 22 26 26 C 1.38226 * 119.99923 * 359.97438 * 25 24 23 27 27 H 1.09000 * 109.47168 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47666 * 300.00205 * 1 2 3 29 29 H 1.09007 * 109.47352 * 60.00491 * 1 2 3 30 30 H 1.08997 * 109.47152 * 184.99951 * 4 2 1 31 31 H 1.08998 * 109.46921 * 305.00426 * 4 2 1 32 32 H 0.96996 * 119.99441 * 179.97438 * 8 7 5 33 33 H 1.08995 * 109.46875 * 174.99823 * 13 2 1 34 34 H 1.08995 * 109.46807 * 54.99741 * 13 2 1 35 35 H 1.00897 * 111.00224 * 303.94948 * 14 13 2 36 36 H 1.09002 * 109.47153 * 300.00004 * 17 15 14 37 37 H 1.09001 * 109.47289 * 60.00087 * 17 15 14 38 38 H 1.09004 * 109.47261 * 179.97438 * 17 15 14 39 39 H 1.09002 * 109.47153 * 180.02562 * 20 18 15 40 40 H 1.09001 * 109.46832 * 60.00321 * 20 18 15 41 41 H 1.09004 * 109.47261 * 300.00303 * 20 18 15 42 42 H 1.08009 * 119.99451 * 359.97438 * 22 21 18 43 43 H 1.07998 * 119.99870 * 180.27556 * 23 22 21 44 44 H 1.08005 * 120.00283 * 179.83448 * 24 23 22 45 45 H 1.08005 * 120.00021 * 179.97438 * 25 24 23 46 46 H 1.07996 * 120.00316 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0569 -2.4766 6 1 1.0806 0.9744 -2.3758 7 6 1.9932 -0.4019 -3.7283 8 7 2.6765 -1.5190 -3.8510 9 14 1.4997 0.5631 -5.2495 10 1 0.7432 1.7746 -4.8435 11 1 2.7181 0.9679 -5.9959 12 1 0.6460 -0.2859 -6.1189 13 6 2.0400 -0.7212 1.2493 14 7 1.6513 0.0376 2.4456 15 6 2.1246 -0.6269 3.6672 16 1 2.0807 -1.7078 3.5333 17 6 3.5683 -0.2064 3.9498 18 6 1.2357 -0.2224 4.8450 19 1 1.2798 0.8585 4.9790 20 6 -0.2079 -0.6428 4.5624 21 6 1.7217 -0.9035 6.0984 22 6 1.7519 -2.2838 6.1675 23 6 2.2017 -2.9087 7.3156 24 6 2.6128 -2.1533 8.3978 25 6 2.5778 -0.7730 8.3305 26 6 2.1321 -0.1482 7.1809 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8901 30 1 3.1263 -0.7995 -1.2055 31 1 1.6053 -1.7199 -1.2950 32 1 2.9237 -1.8419 -4.7316 33 1 3.1262 -0.7994 1.2056 34 1 1.6053 -1.7197 1.2953 35 1 1.9881 0.9874 2.3966 36 1 4.2016 -0.4946 3.1108 37 1 3.6124 0.8744 4.0838 38 1 3.9194 -0.6991 4.8566 39 1 -0.8413 -0.3542 5.4013 40 1 -0.2519 -1.7237 4.4285 41 1 -0.5592 -0.1498 3.6559 42 1 1.4267 -2.8740 5.3234 43 1 2.2294 -3.9870 7.3679 44 1 2.9618 -2.6415 9.2958 45 1 2.8986 -0.1828 9.1763 46 1 2.1051 0.9302 7.1282 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602564664.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:16 Heat of formation + Delta-G solvation = -9.375735 kcal Electronic energy + Delta-G solvation = -21068.789651 eV Core-core repulsion = 18149.742415 eV Total energy + Delta-G solvation = -2919.047236 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.83316 -37.59687 -35.40251 -33.11163 -31.81547 -31.04773 -29.30171 -29.10040 -26.70379 -25.07942 -23.98899 -22.89302 -22.59385 -21.61169 -20.01720 -18.83164 -17.04650 -16.30596 -15.62743 -15.15611 -14.84157 -14.73048 -14.46851 -14.32461 -13.65008 -13.62521 -13.26654 -13.13409 -12.89166 -12.46791 -12.31293 -12.08684 -12.00593 -11.59922 -11.46910 -11.32640 -11.27966 -11.06353 -10.84387 -10.75552 -10.72361 -10.50416 -10.26830 -10.16023 -9.67561 -9.11371 -9.05741 -8.94045 -8.79048 -8.31570 -8.01172 -5.96251 -3.97088 1.23781 1.26432 3.32879 3.40487 3.44618 3.65209 4.32740 4.50189 4.63268 4.81110 4.89828 4.90840 5.02092 5.16950 5.31590 5.37013 5.39149 5.39693 5.50276 5.61435 5.73158 5.74703 5.87343 5.89257 5.92940 5.99796 6.05962 6.15810 6.16236 6.24237 6.31465 6.36989 6.42790 6.50054 6.60205 6.61339 6.72160 6.88032 7.05306 7.21340 7.23608 7.42712 7.69718 7.73807 7.88180 8.04509 8.48639 9.09710 9.66250 11.15374 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.041761 B = 0.002884 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.322278 B = 9708.038534 C = 9861.253132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.052 0.948 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.065 3.935 14 N -0.680 5.680 15 C 0.092 3.908 16 H 0.075 0.925 17 C -0.182 4.182 18 C -0.041 4.041 19 H 0.075 0.925 20 C -0.133 4.133 21 C -0.064 4.064 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.131 4.131 25 C -0.120 4.120 26 C -0.120 4.120 27 H 0.038 0.962 28 H 0.042 0.958 29 H 0.052 0.948 30 H 0.012 0.988 31 H 0.016 0.984 32 H 0.258 0.742 33 H 0.023 0.977 34 H 0.064 0.936 35 H 0.337 0.663 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.044 0.956 40 H 0.049 0.951 41 H 0.077 0.923 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.118 0.882 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.005 0.595 23.744 23.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.011 4.011 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.063 4.063 14 N -0.310 5.310 15 C -0.019 4.019 16 H 0.094 0.906 17 C -0.240 4.240 18 C -0.060 4.060 19 H 0.093 0.907 20 C -0.190 4.190 21 C -0.065 4.065 22 C -0.133 4.133 23 C -0.137 4.137 24 C -0.149 4.149 25 C -0.138 4.138 26 C -0.138 4.138 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.030 0.970 31 H 0.034 0.966 32 H 0.068 0.932 33 H 0.042 0.958 34 H 0.083 0.917 35 H 0.155 0.845 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.569 0.198 23.628 23.681 hybrid contribution 0.922 0.551 -0.919 1.413 sum -0.647 0.748 22.709 22.731 Atomic orbital electron populations 1.21579 0.95753 1.00490 1.00084 1.21190 0.95957 0.98872 0.94072 0.92916 1.19124 0.95863 0.95569 0.90513 1.21284 1.34391 1.08235 0.90990 0.92531 1.25031 0.95382 0.95117 0.99117 1.69983 1.39232 1.21283 1.23228 0.86578 0.78227 0.80141 0.83314 1.19756 1.21146 1.21092 1.22153 0.97173 0.97548 0.89442 1.60585 1.63552 1.05647 1.01195 1.21551 0.91364 0.98996 0.89944 0.90631 1.22505 0.98129 1.01469 1.01940 1.20151 0.95836 0.99453 0.90598 0.90695 1.21704 0.94151 1.01312 1.01855 1.19953 0.97424 0.93677 0.95401 1.21058 0.99891 0.94304 0.98059 1.21145 0.99166 0.99780 0.93596 1.21101 1.01036 0.94122 0.98651 1.21112 1.00043 0.94767 0.97926 1.21076 0.99788 0.99677 0.93239 0.94239 0.93926 0.92887 0.97004 0.96606 0.93187 0.95831 0.91715 0.84541 0.92578 0.92679 0.92313 0.93733 0.93154 0.90443 0.86067 0.86297 0.86483 0.86401 0.86309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 8.89 37.15 0.33 -2.01 16 2 C -0.08 -1.66 2.48 -90.62 -0.22 -1.88 16 3 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.36 8.41 -34.44 -0.29 -14.64 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.56 5.46 -17.81 -0.10 1.46 16 8 N -0.90 -27.15 13.29 55.43 0.74 -26.42 16 9 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.07 1.11 4.87 -3.82 -0.02 1.09 16 14 N -0.68 -9.36 4.94 -106.72 -0.53 -9.89 16 15 C 0.09 1.10 1.99 -67.71 -0.13 0.96 16 16 H 0.08 0.97 7.06 -51.93 -0.37 0.61 16 17 C -0.18 -2.09 8.92 37.16 0.33 -1.76 16 18 C -0.04 -0.44 2.34 -91.77 -0.21 -0.65 16 19 H 0.07 0.78 7.88 -51.93 -0.41 0.37 16 20 C -0.13 -1.47 8.85 37.16 0.33 -1.14 16 21 C -0.06 -0.66 3.52 -104.63 -0.37 -1.03 16 22 C -0.12 -1.18 8.71 -39.58 -0.34 -1.53 16 23 C -0.12 -1.11 10.05 -39.59 -0.40 -1.51 16 24 C -0.13 -1.16 10.05 -39.58 -0.40 -1.55 16 25 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 26 C -0.12 -1.15 9.67 -39.59 -0.38 -1.54 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.04 0.72 7.75 -51.93 -0.40 0.32 16 29 H 0.05 1.10 6.95 -51.92 -0.36 0.74 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.02 0.41 7.44 -51.93 -0.39 0.03 16 34 H 0.06 1.13 8.05 -51.93 -0.42 0.72 16 35 H 0.34 4.49 8.47 -39.29 -0.33 4.16 16 36 H 0.06 0.70 7.45 -51.93 -0.39 0.32 16 37 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 38 H 0.06 0.66 7.22 -51.93 -0.37 0.29 16 39 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.56 7.38 -51.93 -0.38 0.17 16 41 H 0.08 0.95 7.60 -51.93 -0.39 0.56 16 42 H 0.12 1.20 7.11 -52.48 -0.37 0.83 16 43 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 45 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 46 H 0.12 0.99 7.95 -52.49 -0.42 0.57 16 LS Contribution 364.46 15.07 5.49 5.49 Total: -1.00 -29.60 364.46 -10.04 -39.63 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -8.32 Total: 1.02 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: -2.40 Total: -26.63 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.21 Total: -36.31 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.60 -10.04 -39.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602564664.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.257 kcal (2) G-P(sol) polarization free energy of solvation -29.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds