Wall clock time and date at job start Mon Mar 30 2020 01:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47139 * 2 1 4 4 C 1.53002 * 109.47467 * 240.00080 * 2 1 3 5 5 C 1.50704 * 109.46696 * 64.99641 * 4 2 1 6 6 H 1.07997 * 120.00240 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99545 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99984 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00049 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46974 * 90.00152 * 9 7 5 11 11 H 1.48497 * 109.47446 * 210.00373 * 9 7 5 12 12 H 1.48502 * 109.46769 * 330.00299 * 9 7 5 13 13 C 1.53005 * 109.47347 * 120.00016 * 2 1 3 14 14 N 1.46902 * 109.46860 * 295.00098 * 13 2 1 15 15 C 1.46901 * 110.99875 * 179.97438 * 14 13 2 16 16 H 1.08997 * 109.46702 * 35.00213 * 15 14 13 17 17 C 1.52997 * 109.47466 * 275.00066 * 15 14 13 18 18 C 1.53004 * 109.47140 * 154.99892 * 15 14 13 19 19 H 1.09001 * 109.47026 * 61.03372 * 18 15 14 20 20 C 1.52992 * 109.47013 * 181.03595 * 18 15 14 21 21 C 1.50699 * 109.46992 * 301.03778 * 18 15 14 22 22 C 1.38237 * 120.00058 * 301.59012 * 21 18 15 23 23 C 1.38231 * 120.00024 * 179.79016 * 22 21 18 24 24 C 1.38241 * 120.00039 * 0.44116 * 23 22 21 25 25 C 1.38236 * 119.99833 * 359.81591 * 24 23 22 26 26 C 1.38235 * 119.99938 * 121.87009 * 21 18 15 27 27 H 1.08994 * 109.47200 * 59.99893 * 1 2 3 28 28 H 1.08996 * 109.47025 * 300.00097 * 1 2 3 29 29 H 1.09002 * 109.47139 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47460 * 184.99764 * 4 2 1 31 31 H 1.09003 * 109.46744 * 305.00312 * 4 2 1 32 32 H 0.97007 * 119.99874 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47040 * 54.99649 * 13 2 1 34 34 H 1.08995 * 109.47177 * 175.00555 * 13 2 1 35 35 H 1.00897 * 111.00267 * 303.95145 * 14 13 2 36 36 H 1.09000 * 109.47435 * 173.99704 * 17 15 14 37 37 H 1.08996 * 109.47294 * 294.00148 * 17 15 14 38 38 H 1.09005 * 109.47007 * 53.99562 * 17 15 14 39 39 H 1.08999 * 109.47264 * 299.99585 * 20 18 15 40 40 H 1.08994 * 109.47650 * 60.00276 * 20 18 15 41 41 H 1.09005 * 109.46921 * 180.02562 * 20 18 15 42 42 H 1.08003 * 119.99747 * 0.02562 * 22 21 18 43 43 H 1.07991 * 120.00373 * 180.27395 * 23 22 21 44 44 H 1.07996 * 120.00329 * 179.82719 * 24 23 22 45 45 H 1.07998 * 120.00058 * 179.97438 * 25 24 23 46 46 H 1.08002 * 120.00014 * 359.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3756 7 6 1.9933 -0.4016 -3.7282 8 7 2.6766 -1.5186 -3.8511 9 14 1.4997 0.5635 -5.2496 10 1 2.5652 1.5431 -5.5816 11 1 1.3131 -0.3702 -6.3891 12 1 0.2284 1.2847 -4.9873 13 6 2.0401 -0.7213 1.2493 14 7 1.6514 0.0374 2.4456 15 6 2.1248 -0.6271 3.6672 16 1 3.0883 -1.0986 3.4741 17 6 1.1123 -1.6918 4.0938 18 6 2.2780 0.4075 4.7840 19 1 1.3108 0.8661 4.9896 20 6 2.7956 -0.2802 6.0488 21 6 3.2563 1.4700 4.3537 22 6 4.5477 1.1204 4.0059 23 6 5.4437 2.0945 3.6070 24 6 5.0511 3.4193 3.5646 25 6 3.7612 3.7695 3.9175 26 6 2.8638 2.7948 4.3122 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1263 -0.7994 -1.2056 31 1 1.6054 -1.7198 -1.2952 32 1 2.9239 -1.8415 -4.7317 33 1 1.6054 -1.7198 1.2952 34 1 3.1263 -0.7994 1.2056 35 1 1.9881 0.9873 2.3967 36 1 1.5119 -2.2565 4.9361 37 1 0.1805 -1.2095 4.3890 38 1 0.9230 -2.3680 3.2600 39 1 2.0880 -1.0487 6.3601 40 1 3.7628 -0.7387 5.8432 41 1 2.9044 0.4568 6.8445 42 1 4.8554 0.0858 4.0422 43 1 6.4513 1.8210 3.3311 44 1 5.7519 4.1807 3.2556 45 1 3.4545 4.8045 3.8848 46 1 1.8561 3.0684 4.5879 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602564667.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:21 Heat of formation + Delta-G solvation = -8.769898 kcal Electronic energy + Delta-G solvation = -21505.264804 eV Core-core repulsion = 18586.243839 eV Total energy + Delta-G solvation = -2919.020965 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.84566 -37.44385 -35.46680 -32.99779 -31.69333 -30.95715 -30.19243 -28.17647 -26.73442 -25.54001 -24.04356 -22.80962 -22.36772 -21.38924 -19.77233 -18.85750 -16.98829 -16.27409 -15.87208 -15.45561 -14.80097 -14.66396 -14.39628 -14.12755 -13.87980 -13.43082 -13.15066 -13.03153 -12.85718 -12.37950 -12.21607 -12.14715 -11.88782 -11.63637 -11.58324 -11.41581 -11.21063 -11.13426 -10.85202 -10.78890 -10.63306 -10.39719 -10.22695 -10.12249 -9.63403 -9.08504 -8.95412 -8.90923 -8.70937 -8.28929 -8.00080 -5.93827 -3.94588 1.31096 1.36834 3.35348 3.41463 3.45194 3.74067 4.38487 4.52380 4.55588 4.77205 4.95983 4.96669 5.07636 5.25637 5.28041 5.41927 5.43295 5.44544 5.48421 5.57068 5.69585 5.78460 5.86246 5.90325 5.96289 5.97831 6.01335 6.03891 6.17032 6.23808 6.37662 6.45192 6.48541 6.51023 6.59971 6.64406 6.76716 6.96352 7.09456 7.24602 7.27243 7.49769 7.73507 7.79651 7.91544 8.06897 8.51436 9.11795 9.68509 11.17767 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.017912 B = 0.004163 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.854689 B = 6723.660673 C = 7580.664919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.082 4.082 3 H 0.051 0.949 4 C 0.028 3.972 5 C -0.511 4.511 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.066 3.934 14 N -0.682 5.682 15 C 0.090 3.910 16 H 0.041 0.959 17 C -0.139 4.139 18 C -0.054 4.054 19 H 0.085 0.915 20 C -0.142 4.142 21 C -0.078 4.078 22 C -0.114 4.114 23 C -0.117 4.117 24 C -0.125 4.125 25 C -0.118 4.118 26 C -0.114 4.114 27 H 0.052 0.948 28 H 0.041 0.959 29 H 0.038 0.962 30 H 0.011 0.989 31 H 0.016 0.984 32 H 0.259 0.741 33 H 0.065 0.935 34 H 0.021 0.979 35 H 0.338 0.662 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.079 5.431 20.621 21.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.100 4.100 3 H 0.070 0.930 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.063 4.063 14 N -0.314 5.314 15 C -0.020 4.020 16 H 0.059 0.941 17 C -0.197 4.197 18 C -0.073 4.073 19 H 0.103 0.897 20 C -0.200 4.200 21 C -0.078 4.078 22 C -0.132 4.132 23 C -0.135 4.135 24 C -0.143 4.143 25 C -0.136 4.136 26 C -0.133 4.133 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.030 0.970 31 H 0.034 0.966 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.039 0.961 35 H 0.157 0.843 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.521 5.025 20.519 21.180 hybrid contribution 0.866 0.664 -1.126 1.568 sum 2.387 5.689 19.393 20.350 Atomic orbital electron populations 1.21572 0.95774 1.00467 1.00052 1.21181 0.95934 0.98830 0.94102 0.93049 1.19115 0.95835 0.95536 0.90488 1.21247 1.34438 1.08208 0.91012 0.92612 1.25016 0.95387 0.95088 0.99051 1.69974 1.39241 1.21252 1.23292 0.86641 0.78926 0.79821 0.82904 1.20793 1.21313 1.19883 1.22156 0.96863 0.97691 0.89578 1.60610 1.63884 1.05792 1.01145 1.21526 0.96592 0.93965 0.89878 0.94130 1.21825 0.99169 0.98087 1.00623 1.20389 0.97643 0.94068 0.95226 0.89710 1.21852 1.01277 1.00374 0.96449 1.19885 0.94543 0.94351 0.99040 1.21002 0.93311 0.99345 0.99586 1.21140 0.99659 0.93175 0.99525 1.21140 0.96460 0.96326 1.00335 1.21138 0.93765 0.99352 0.99363 1.21089 0.99561 0.92372 1.00230 0.92897 0.93967 0.94236 0.97033 0.96612 0.93160 0.91688 0.96063 0.84278 0.92918 0.92270 0.92379 0.91837 0.92595 0.92627 0.86410 0.86238 0.86304 0.86196 0.86066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 8.89 37.16 0.33 -2.11 16 2 C -0.08 -1.73 2.48 -90.62 -0.22 -1.96 16 3 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 5 C -0.51 -14.62 8.41 -34.44 -0.29 -14.91 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 9 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.07 1.19 4.87 -3.82 -0.02 1.17 16 14 N -0.68 -10.32 5.76 -106.72 -0.61 -10.93 16 15 C 0.09 1.13 2.02 -67.71 -0.14 0.99 16 16 H 0.04 0.54 6.99 -51.93 -0.36 0.18 16 17 C -0.14 -1.61 8.94 37.16 0.33 -1.28 16 18 C -0.05 -0.57 2.29 -91.77 -0.21 -0.78 16 19 H 0.08 0.89 7.88 -51.93 -0.41 0.48 16 20 C -0.14 -1.25 8.70 37.15 0.32 -0.92 16 21 C -0.08 -0.89 3.40 -104.62 -0.36 -1.24 16 22 C -0.11 -1.34 8.73 -39.58 -0.35 -1.68 16 23 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 24 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 25 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 26 C -0.11 -1.26 9.56 -39.58 -0.38 -1.64 16 27 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 28 H 0.04 0.76 7.75 -51.93 -0.40 0.36 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.06 1.19 7.35 -51.93 -0.38 0.81 16 34 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 35 H 0.34 5.21 6.99 -39.29 -0.27 4.94 16 36 H 0.05 0.51 6.78 -51.93 -0.35 0.15 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.75 7.34 -51.93 -0.38 0.37 16 39 H 0.06 0.50 6.59 -51.93 -0.34 0.16 16 40 H 0.05 0.49 7.48 -51.93 -0.39 0.10 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.12 1.30 7.11 -52.48 -0.37 0.92 16 43 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 44 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 45 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 46 H 0.12 1.16 7.95 -52.49 -0.42 0.75 16 LS Contribution 361.85 15.07 5.45 5.45 Total: -1.00 -30.33 361.85 -10.01 -40.34 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -8.18 Total: 2.17 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: -2.39 Total: -27.37 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.12 Total: -37.61 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.33 -10.01 -40.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602564667.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.570 kcal (2) G-P(sol) polarization free energy of solvation -30.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds