Wall clock time and date at job start Mon Mar 30 2020 01:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47139 * 2 1 4 4 C 1.53002 * 109.47467 * 240.00080 * 2 1 3 5 5 C 1.50704 * 109.46696 * 64.99641 * 4 2 1 6 6 H 1.07997 * 120.00240 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99545 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99984 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00049 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46974 * 90.00152 * 9 7 5 11 11 H 1.48497 * 109.47446 * 210.00373 * 9 7 5 12 12 H 1.48502 * 109.46769 * 330.00299 * 9 7 5 13 13 C 1.53005 * 109.47347 * 120.00016 * 2 1 3 14 14 N 1.46902 * 109.46860 * 295.00098 * 13 2 1 15 15 C 1.46901 * 110.99875 * 179.97438 * 14 13 2 16 16 H 1.08997 * 109.46702 * 35.00213 * 15 14 13 17 17 C 1.52997 * 109.47466 * 275.00066 * 15 14 13 18 18 C 1.53004 * 109.47140 * 154.99892 * 15 14 13 19 19 H 1.09001 * 109.47026 * 61.03372 * 18 15 14 20 20 C 1.52992 * 109.47013 * 181.03595 * 18 15 14 21 21 C 1.50699 * 109.46992 * 301.03778 * 18 15 14 22 22 C 1.38237 * 120.00058 * 301.59012 * 21 18 15 23 23 C 1.38231 * 120.00024 * 179.79016 * 22 21 18 24 24 C 1.38241 * 120.00039 * 0.44116 * 23 22 21 25 25 C 1.38236 * 119.99833 * 359.81591 * 24 23 22 26 26 C 1.38235 * 119.99938 * 121.87009 * 21 18 15 27 27 H 1.08994 * 109.47200 * 59.99893 * 1 2 3 28 28 H 1.08996 * 109.47025 * 300.00097 * 1 2 3 29 29 H 1.09002 * 109.47139 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47460 * 184.99764 * 4 2 1 31 31 H 1.09003 * 109.46744 * 305.00312 * 4 2 1 32 32 H 0.97007 * 119.99874 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47040 * 54.99649 * 13 2 1 34 34 H 1.08995 * 109.47177 * 175.00555 * 13 2 1 35 35 H 1.00897 * 111.00267 * 303.95145 * 14 13 2 36 36 H 1.09000 * 109.47435 * 173.99704 * 17 15 14 37 37 H 1.08996 * 109.47294 * 294.00148 * 17 15 14 38 38 H 1.09005 * 109.47007 * 53.99562 * 17 15 14 39 39 H 1.08999 * 109.47264 * 299.99585 * 20 18 15 40 40 H 1.08994 * 109.47650 * 60.00276 * 20 18 15 41 41 H 1.09005 * 109.46921 * 180.02562 * 20 18 15 42 42 H 1.08003 * 119.99747 * 0.02562 * 22 21 18 43 43 H 1.07991 * 120.00373 * 180.27395 * 23 22 21 44 44 H 1.07996 * 120.00329 * 179.82719 * 24 23 22 45 45 H 1.07998 * 120.00058 * 179.97438 * 25 24 23 46 46 H 1.08002 * 120.00014 * 359.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3756 7 6 1.9933 -0.4016 -3.7282 8 7 2.6766 -1.5186 -3.8511 9 14 1.4997 0.5635 -5.2496 10 1 2.5652 1.5431 -5.5816 11 1 1.3131 -0.3702 -6.3891 12 1 0.2284 1.2847 -4.9873 13 6 2.0401 -0.7213 1.2493 14 7 1.6514 0.0374 2.4456 15 6 2.1248 -0.6271 3.6672 16 1 3.0883 -1.0986 3.4741 17 6 1.1123 -1.6918 4.0938 18 6 2.2780 0.4075 4.7840 19 1 1.3108 0.8661 4.9896 20 6 2.7956 -0.2802 6.0488 21 6 3.2563 1.4700 4.3537 22 6 4.5477 1.1204 4.0059 23 6 5.4437 2.0945 3.6070 24 6 5.0511 3.4193 3.5646 25 6 3.7612 3.7695 3.9175 26 6 2.8638 2.7948 4.3122 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1263 -0.7994 -1.2056 31 1 1.6054 -1.7198 -1.2952 32 1 2.9239 -1.8415 -4.7317 33 1 1.6054 -1.7198 1.2952 34 1 3.1263 -0.7994 1.2056 35 1 1.9881 0.9873 2.3967 36 1 1.5119 -2.2565 4.9361 37 1 0.1805 -1.2095 4.3890 38 1 0.9230 -2.3680 3.2600 39 1 2.0880 -1.0487 6.3601 40 1 3.7628 -0.7387 5.8432 41 1 2.9044 0.4568 6.8445 42 1 4.8554 0.0858 4.0422 43 1 6.4513 1.8210 3.3311 44 1 5.7519 4.1807 3.2556 45 1 3.4545 4.8045 3.8848 46 1 1.8561 3.0684 4.5879 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602564667.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:20 Heat of formation + Delta-G solvation = -24.141762 kcal Electronic energy + Delta-G solvation = -21505.931378 eV Core-core repulsion = 18586.243839 eV Total energy + Delta-G solvation = -2919.687539 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.72443 -38.63225 -36.95406 -34.76394 -33.23681 -31.78515 -31.22340 -29.23913 -28.61469 -26.92685 -25.39163 -24.04671 -23.55378 -22.42295 -21.05642 -20.25309 -18.49392 -17.80464 -17.02974 -16.53216 -16.31643 -15.88159 -15.75650 -15.41844 -14.97837 -14.59379 -14.36329 -14.22866 -13.92336 -13.83877 -13.45782 -13.26453 -13.20929 -13.03114 -12.80587 -12.76053 -12.56046 -12.40753 -12.31165 -12.20471 -12.07800 -11.89750 -11.58881 -11.45564 -11.27713 -11.08727 -10.86793 -10.53853 -9.79664 -9.56743 -9.28172 -8.17701 -6.27048 0.47099 0.52557 1.39561 1.40804 1.51998 2.41843 2.89893 3.15568 3.24512 3.72274 3.84634 4.08537 4.16610 4.19426 4.28193 4.30684 4.40471 4.47483 4.51170 4.58311 4.62717 4.68219 4.76151 4.82517 4.90606 4.92649 5.01947 5.04559 5.09362 5.14202 5.18940 5.20414 5.27932 5.36267 5.45237 5.47722 5.50315 5.56895 5.62517 5.65611 5.75680 5.80652 5.87928 6.13457 6.17595 6.32247 6.53199 6.88489 7.41214 8.94491 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.017912 B = 0.004163 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.854689 B = 6723.660673 C = 7580.664919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.072 4.072 3 H 0.046 0.954 4 C 0.034 3.966 5 C -0.529 4.529 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.263 1.263 13 C 0.081 3.919 14 N -0.677 5.677 15 C 0.089 3.911 16 H 0.032 0.968 17 C -0.136 4.136 18 C -0.046 4.046 19 H 0.090 0.910 20 C -0.138 4.138 21 C -0.086 4.086 22 C -0.130 4.130 23 C -0.132 4.132 24 C -0.135 4.135 25 C -0.125 4.125 26 C -0.124 4.124 27 H 0.037 0.963 28 H 0.067 0.933 29 H 0.035 0.965 30 H -0.018 1.018 31 H -0.010 1.010 32 H 0.262 0.738 33 H 0.061 0.939 34 H 0.009 0.991 35 H 0.338 0.662 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.040 0.960 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.117 0.883 43 H 0.129 0.871 44 H 0.135 0.865 45 H 0.139 0.861 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.172 6.761 21.563 22.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.091 4.091 3 H 0.065 0.935 4 C -0.004 4.004 5 C -0.567 4.567 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.187 1.187 13 C -0.049 4.049 14 N -0.308 5.308 15 C -0.020 4.020 16 H 0.050 0.950 17 C -0.194 4.194 18 C -0.065 4.065 19 H 0.108 0.892 20 C -0.196 4.196 21 C -0.086 4.086 22 C -0.148 4.148 23 C -0.150 4.150 24 C -0.153 4.153 25 C -0.143 4.143 26 C -0.141 4.141 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.001 0.999 31 H 0.008 0.992 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.027 0.973 35 H 0.157 0.843 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.135 0.865 43 H 0.147 0.853 44 H 0.153 0.847 45 H 0.157 0.843 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.609 6.361 21.483 22.413 hybrid contribution 1.190 0.238 -1.385 1.842 sum 1.800 6.599 20.098 21.230 Atomic orbital electron populations 1.21458 0.94481 1.00386 1.00451 1.20991 0.96844 0.98030 0.93273 0.93506 1.18997 0.93858 0.94705 0.92801 1.21624 1.34459 1.08526 0.92075 0.92187 1.25953 0.95217 0.96080 1.02633 1.70110 1.40323 1.22949 1.24275 0.85502 0.79034 0.78389 0.78484 1.19907 1.20800 1.18704 1.21835 0.95847 0.97448 0.89729 1.60584 1.63771 1.05582 1.00900 1.21618 0.96390 0.94694 0.89301 0.95028 1.21811 0.99208 0.97601 1.00756 1.20326 0.97805 0.93336 0.95004 0.89195 1.21830 1.01385 1.00708 0.95638 1.20019 0.94533 0.94885 0.99199 1.21137 0.93857 0.99536 1.00259 1.21384 1.00260 0.93609 0.99755 1.21429 0.97111 0.96550 1.00189 1.21446 0.93650 1.00402 0.98786 1.21337 1.00361 0.92315 1.00135 0.94433 0.91454 0.94540 0.99929 0.99156 0.92939 0.92008 0.97323 0.84313 0.90715 0.91746 0.94102 0.90676 0.92820 0.91905 0.86469 0.85348 0.84681 0.84277 0.84684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.38 8.89 71.98 0.64 -3.74 16 2 C -0.07 -3.11 2.48 -10.79 -0.03 -3.14 16 3 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 4 C 0.03 1.85 4.45 29.85 0.13 1.98 16 5 C -0.53 -30.67 8.41 25.60 0.22 -30.46 16 6 H 0.06 3.36 7.06 -2.91 -0.02 3.34 16 7 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 8 N -0.94 -58.20 13.29 21.45 0.28 -57.92 16 9 Si 0.96 45.20 29.54 68.60 2.03 47.22 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 12 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 13 C 0.08 2.95 4.87 86.30 0.42 3.37 16 14 N -0.68 -19.81 5.76 -491.56 -2.83 -22.64 16 15 C 0.09 2.12 2.02 44.92 0.09 2.21 16 16 H 0.03 0.83 6.99 -2.39 -0.02 0.81 16 17 C -0.14 -2.91 8.94 71.98 0.64 -2.27 16 18 C -0.05 -0.88 2.29 -11.54 -0.03 -0.91 16 19 H 0.09 1.66 7.88 -2.39 -0.02 1.64 16 20 C -0.14 -2.13 8.70 71.98 0.63 -1.51 16 21 C -0.09 -1.85 3.40 -19.87 -0.07 -1.92 16 22 C -0.13 -2.98 8.73 22.27 0.19 -2.78 16 23 C -0.13 -2.93 10.05 22.27 0.22 -2.71 16 24 C -0.13 -2.78 10.05 22.27 0.22 -2.55 16 25 C -0.12 -2.47 10.05 22.27 0.22 -2.24 16 26 C -0.12 -2.51 9.56 22.27 0.21 -2.30 16 27 H 0.04 1.58 6.95 -2.39 -0.02 1.56 16 28 H 0.07 2.32 7.75 -2.39 -0.02 2.30 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 31 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 32 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 33 H 0.06 2.30 7.35 -2.39 -0.02 2.28 16 34 H 0.01 0.33 8.06 -2.39 -0.02 0.31 16 35 H 0.34 10.04 6.99 -89.70 -0.63 9.42 16 36 H 0.07 1.26 6.78 -2.39 -0.02 1.25 16 37 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.04 1.01 7.34 -2.38 -0.02 1.00 16 39 H 0.07 0.99 6.59 -2.39 -0.02 0.97 16 40 H 0.05 0.86 7.48 -2.39 -0.02 0.84 16 41 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.12 2.59 7.11 -2.91 -0.02 2.57 16 43 H 0.13 2.47 8.06 -2.92 -0.02 2.45 16 44 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 45 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 46 H 0.14 2.29 7.95 -2.91 -0.02 2.27 16 Total: -1.00 -65.24 361.85 3.96 -61.27 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.30 Total: 20.66 kcal Atomic # 6 Polarization: -52.79 SS G_CDS: 4.19 Total: -48.60 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -2.55 Total: -80.56 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -65.24 3.96 -61.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602564667.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.132 kcal (2) G-P(sol) polarization free energy of solvation -65.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds