Wall clock time and date at job start Mon Mar 30 2020 01:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47479 * 2 1 4 4 N 1.46898 * 109.47820 * 179.37894 * 3 2 1 5 5 C 1.46906 * 110.99734 * 288.12015 * 4 3 2 6 6 C 1.53004 * 109.46791 * 160.31527 * 5 4 3 7 7 C 1.52996 * 109.46993 * 184.94163 * 6 5 4 8 8 C 1.50699 * 109.47417 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99824 * 0.02562 * 8 7 6 10 10 C 1.37871 * 120.00276 * 179.97438 * 8 7 6 11 11 N 1.31520 * 119.99840 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00077 * 0.02562 * 10 8 7 13 13 H 1.48497 * 109.47076 * 89.99915 * 12 10 8 14 14 H 1.48498 * 109.47330 * 209.99819 * 12 10 8 15 15 H 1.48494 * 109.47180 * 329.99866 * 12 10 8 16 16 C 1.46896 * 111.00229 * 164.16567 * 4 3 2 17 17 C 1.50700 * 109.47251 * 293.95267 * 16 4 3 18 18 C 1.38239 * 119.99760 * 89.99922 * 17 16 4 19 19 C 1.38232 * 119.99599 * 179.72575 * 18 17 16 20 20 C 1.38233 * 120.00554 * 0.26082 * 19 18 17 21 21 C 1.50699 * 120.00431 * 179.97438 * 20 19 18 22 22 C 1.38242 * 119.99578 * 0.02562 * 20 19 18 23 23 C 1.38231 * 119.99998 * 359.95363 * 22 20 19 24 24 H 1.09000 * 109.46652 * 299.99727 * 1 2 3 25 25 H 1.08993 * 109.47081 * 59.99659 * 1 2 3 26 26 H 1.09000 * 109.46734 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47542 * 240.00256 * 2 1 3 28 28 H 1.09002 * 109.47201 * 120.00442 * 2 1 3 29 29 H 1.09010 * 109.46973 * 59.37617 * 3 2 1 30 30 H 1.08999 * 109.47150 * 299.38485 * 3 2 1 31 31 H 1.08989 * 109.47288 * 280.31367 * 5 4 3 32 32 H 1.09004 * 109.47049 * 40.31913 * 5 4 3 33 33 H 1.09005 * 109.47095 * 304.93643 * 6 5 4 34 34 H 1.09000 * 109.47152 * 64.93838 * 6 5 4 35 35 H 1.09005 * 109.47291 * 299.99569 * 7 6 5 36 36 H 1.09000 * 109.47437 * 59.99849 * 7 6 5 37 37 H 0.97004 * 119.99732 * 179.97438 * 11 10 8 38 38 H 1.09011 * 109.46901 * 173.95637 * 16 4 3 39 39 H 1.08994 * 109.47211 * 53.95537 * 16 4 3 40 40 H 1.07997 * 119.99810 * 0.02562 * 18 17 16 41 41 H 1.08000 * 119.99437 * 180.27840 * 19 18 17 42 42 H 1.08999 * 109.46924 * 89.99432 * 21 20 19 43 43 H 1.08996 * 109.47089 * 210.00142 * 21 20 19 44 44 H 1.08999 * 109.46510 * 330.00198 * 21 20 19 45 45 H 1.07997 * 119.99601 * 179.97438 * 22 20 19 46 46 H 1.08005 * 120.00025 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5090 1.4426 0.0150 5 6 4.0221 1.0208 1.3253 6 6 5.4744 0.5618 1.1806 7 6 5.9698 0.0076 2.5179 8 6 7.4001 -0.4451 2.3753 9 1 7.9054 -0.3469 1.4259 10 6 8.0639 -0.9836 3.4570 11 7 9.3123 -1.3781 3.3326 12 14 7.1902 -1.1527 5.0994 13 1 6.5183 -2.4752 5.1687 14 1 8.1803 -1.0422 6.2006 15 1 6.1773 -0.0753 5.2345 16 6 4.0392 2.7606 -0.3585 17 6 3.6954 3.0512 -1.7967 18 6 2.5127 3.6955 -2.1080 19 6 2.2000 3.9671 -3.4268 20 6 3.0674 3.5896 -4.4348 21 6 2.7263 3.8852 -5.8726 22 6 4.2474 2.9400 -4.1239 23 6 4.5603 2.6687 -2.8050 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6676 1.9595 0.8844 30 1 1.6858 1.9531 -0.8954 31 1 3.9733 1.8581 2.0213 32 1 3.4169 0.1973 1.7046 33 1 5.5355 -0.2165 0.4199 34 1 6.0952 1.4078 0.8855 35 1 5.9089 0.7858 3.2787 36 1 5.3491 -0.8384 2.8130 37 1 9.7795 -1.7567 4.0938 38 1 5.1224 2.7645 -0.2360 39 1 3.5983 3.5244 0.2819 40 1 1.8353 3.9910 -1.3205 41 1 1.2781 4.4745 -3.6697 42 1 3.1228 4.8628 -6.1465 43 1 3.1657 3.1218 -6.5146 44 1 1.6433 3.8847 -5.9964 45 1 4.9249 2.6447 -4.9114 46 1 5.4824 2.1616 -2.5621 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611565655.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:45 Heat of formation + Delta-G solvation = -0.682076 kcal Electronic energy + Delta-G solvation = -21006.959441 eV Core-core repulsion = 18088.289189 eV Total energy + Delta-G solvation = -2918.670251 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.71241 -37.77400 -34.13396 -33.76518 -32.52937 -31.20795 -30.94481 -28.45951 -27.16964 -25.49416 -23.59981 -22.78434 -22.06676 -20.80656 -20.36832 -19.87420 -16.70731 -16.34571 -15.63589 -15.51503 -15.25141 -14.70786 -14.60219 -14.19272 -14.01677 -13.77719 -13.48713 -13.33933 -12.97465 -12.62432 -12.50176 -12.38008 -12.05382 -11.87622 -11.83868 -11.63572 -11.36097 -11.16277 -10.96513 -10.91262 -10.81366 -10.70481 -10.42258 -9.85089 -9.62023 -9.53883 -9.13375 -8.90383 -8.56355 -8.49907 -8.06335 -6.00453 -3.97786 1.29012 1.40283 3.32892 3.39996 3.43783 3.64405 4.25000 4.48418 4.71534 4.74685 4.89936 4.98435 5.01537 5.07699 5.13760 5.33480 5.38496 5.40117 5.42174 5.45692 5.49438 5.57415 5.63785 5.70503 5.70958 5.78967 5.82613 5.96370 6.01418 6.07288 6.07665 6.18009 6.26069 6.38338 6.38886 6.55152 6.57505 6.63886 6.68547 6.97751 6.99898 7.29221 7.31633 7.42618 7.53042 7.84761 8.59407 9.05511 9.62466 11.13215 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.019230 B = 0.003709 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.717475 B = 7547.692312 C = 8576.317851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C 0.048 3.952 4 N -0.531 5.531 5 C 0.051 3.949 6 C -0.095 4.095 7 C -0.013 4.013 8 C -0.516 4.516 9 H 0.071 0.929 10 C 0.064 3.936 11 N -0.905 5.905 12 Si 0.880 3.120 13 H -0.277 1.277 14 H -0.289 1.289 15 H -0.266 1.266 16 C 0.090 3.910 17 C -0.074 4.074 18 C -0.113 4.113 19 C -0.125 4.125 20 C -0.094 4.094 21 C -0.113 4.113 22 C -0.122 4.122 23 C -0.092 4.092 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.027 0.973 30 H 0.076 0.924 31 H 0.029 0.971 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.012 0.988 36 H 0.010 0.990 37 H 0.262 0.738 38 H 0.090 0.910 39 H 0.038 0.962 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.120 0.880 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.860 10.453 -13.556 24.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.080 4.080 4 N -0.255 5.255 5 C -0.076 4.076 6 C -0.133 4.133 7 C -0.051 4.051 8 C -0.554 4.554 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.545 5.545 12 Si 0.708 3.292 13 H -0.203 1.203 14 H -0.215 1.215 15 H -0.191 1.191 16 C -0.037 4.037 17 C -0.074 4.074 18 C -0.132 4.132 19 C -0.143 4.143 20 C -0.094 4.094 21 C -0.169 4.169 22 C -0.140 4.140 23 C -0.110 4.110 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.046 0.954 30 H 0.094 0.906 31 H 0.047 0.953 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.031 0.969 36 H 0.028 0.972 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.056 0.944 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.138 0.862 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -17.547 10.037 -13.788 24.469 hybrid contribution -0.589 0.394 1.594 1.745 sum -18.136 10.431 -12.194 24.216 Atomic orbital electron populations 1.21729 0.96102 1.01519 1.01346 1.21521 0.94730 0.96665 1.02967 1.22259 0.88004 0.97209 1.00489 1.62056 1.07058 1.25911 1.30473 1.22395 0.98437 0.99076 0.87681 1.21437 0.91700 1.00246 0.99870 1.19555 0.96944 0.95505 0.93126 1.21151 0.95545 1.40181 0.98565 0.91039 1.25042 0.94732 0.94993 0.98849 1.69925 1.10538 1.42795 1.31219 0.86773 0.79654 0.78937 0.83877 1.20329 1.21478 1.19094 1.21101 1.01421 0.89932 0.91275 1.19805 0.94514 0.97671 0.95439 1.21015 0.96508 0.99407 0.96257 1.20922 0.99517 1.01272 0.92550 1.19881 0.94977 0.98907 0.95613 1.20768 1.01767 1.01861 0.92534 1.21041 0.96680 0.99678 0.96553 1.21099 0.99718 0.98087 0.92102 0.93089 0.92992 0.92690 0.91240 0.91736 0.95437 0.90608 0.95269 0.90997 0.91954 0.93096 0.96949 0.97159 0.92822 0.89190 0.94419 0.86566 0.86510 0.91419 0.91646 0.91806 0.86220 0.85587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 37.16 0.37 -1.10 16 2 C -0.12 -1.47 6.01 -26.73 -0.16 -1.63 16 3 C 0.05 0.61 4.80 -3.83 -0.02 0.59 16 4 N -0.53 -7.78 4.38 -236.07 -1.03 -8.82 16 5 C 0.05 0.85 4.83 -3.82 -0.02 0.83 16 6 C -0.09 -1.91 5.19 -26.73 -0.14 -2.04 16 7 C -0.01 -0.32 4.04 -27.89 -0.11 -0.44 16 8 C -0.52 -14.98 9.66 -34.44 -0.33 -15.31 16 9 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 10 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 11 N -0.91 -28.36 13.96 55.43 0.77 -27.59 16 12 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 15 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 16 C 0.09 1.22 4.94 -4.98 -0.02 1.20 16 17 C -0.07 -0.93 4.94 -104.62 -0.52 -1.45 16 18 C -0.11 -1.27 7.85 -39.58 -0.31 -1.58 16 19 C -0.12 -1.28 9.70 -39.59 -0.38 -1.66 16 20 C -0.09 -0.96 5.88 -104.62 -0.62 -1.58 16 21 C -0.11 -0.85 10.01 36.00 0.36 -0.49 16 22 C -0.12 -1.36 9.70 -39.58 -0.38 -1.74 16 23 C -0.09 -1.15 9.70 -39.59 -0.38 -1.54 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.85 6.52 -51.93 -0.34 0.51 16 29 H 0.03 0.34 8.05 -51.92 -0.42 -0.08 16 30 H 0.08 0.91 5.13 -51.93 -0.27 0.64 16 31 H 0.03 0.48 8.00 -51.94 -0.42 0.06 16 32 H 0.07 1.18 6.23 -51.93 -0.32 0.86 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.05 1.02 6.95 -51.93 -0.36 0.66 16 35 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 16 36 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.09 1.30 6.66 -51.92 -0.35 0.96 16 39 H 0.04 0.48 8.06 -51.93 -0.42 0.06 16 40 H 0.12 1.15 7.73 -52.49 -0.41 0.74 16 41 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 44 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 45 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 46 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 LS Contribution 362.80 15.07 5.47 5.47 Total: -1.00 -31.01 362.80 -10.52 -41.54 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -8.29 Total: -1.85 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -2.77 Total: -26.13 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: -0.26 Total: -36.41 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.01 -10.52 -41.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611565655.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.855 kcal (2) G-P(sol) polarization free energy of solvation -31.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds