Wall clock time and date at job start Mon Mar 30 2020 01:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00289 * 2 1 4 4 H 1.48496 * 109.46788 * 270.00105 * 3 2 1 5 5 H 1.48496 * 109.46718 * 29.99577 * 3 2 1 6 6 H 1.48494 * 109.47289 * 149.99646 * 3 2 1 7 7 C 1.37876 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00485 * 0.02562 * 7 2 1 9 9 S 1.76208 * 119.99892 * 180.02562 * 7 2 1 10 10 O 1.42097 * 106.39788 * 66.46085 * 9 7 2 11 11 O 1.42095 * 106.40015 * 293.54072 * 9 7 2 12 12 N 1.65594 * 107.21674 * 180.02562 * 9 7 2 13 13 C 1.46503 * 120.00333 * 65.00160 * 12 9 7 14 14 C 1.50694 * 109.47395 * 164.99564 * 13 12 9 15 15 C 1.38653 * 120.79277 * 104.99766 * 14 13 12 16 16 C 1.38195 * 119.17975 * 180.02562 * 15 14 13 17 17 N 1.31883 * 120.79006 * 0.02562 * 16 15 14 18 18 C 1.31842 * 121.74130 * 359.97438 * 17 16 15 19 19 C 1.38349 * 120.74297 * 359.97438 * 18 17 16 20 20 Cl 1.73602 * 120.43161 * 179.97438 * 19 18 17 21 21 H 0.97001 * 120.00158 * 0.02562 * 1 2 3 22 22 H 0.97004 * 120.00090 * 244.99569 * 12 9 7 23 23 H 1.09003 * 109.46804 * 44.99626 * 13 12 9 24 24 H 1.09005 * 109.46978 * 285.00081 * 13 12 9 25 25 H 1.08002 * 120.41349 * 0.05045 * 15 14 13 26 26 H 1.07990 * 119.60288 * 179.72771 * 16 15 14 27 27 H 1.08004 * 119.62972 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 16 3.7665 -1.1941 0.0012 10 8 4.1672 -0.6494 1.2510 11 8 4.1682 -0.6500 -1.2484 12 7 4.2566 -2.7759 0.0011 13 6 3.9617 -3.6341 -1.1491 14 6 4.8076 -4.8791 -1.0769 15 6 4.2532 -6.0930 -0.7006 16 6 5.0598 -7.2138 -0.6450 17 7 6.3421 -7.1382 -0.9441 18 6 6.9041 -6.0017 -1.3059 19 6 6.1596 -4.8383 -1.3852 20 17 6.9081 -3.3462 -1.8619 21 1 -0.4850 0.8400 -0.0004 22 1 4.7390 -3.1343 0.7625 23 1 4.1850 -3.0961 -2.0705 24 1 2.9072 -3.9098 -1.1358 25 1 3.2039 -6.1620 -0.4543 26 1 4.6362 -8.1618 -0.3485 27 1 7.9575 -5.9787 -1.5430 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704412903.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:26 Heat of formation + Delta-G solvation = -52.291384 kcal Electronic energy + Delta-G solvation = -16968.433707 eV Core-core repulsion = 13879.087241 eV Total energy + Delta-G solvation = -3089.346466 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.012 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.42562 -36.67004 -35.79097 -35.36887 -34.46033 -33.07321 -31.91049 -31.14821 -26.51308 -26.15448 -23.69073 -22.18098 -19.23433 -17.60265 -17.28827 -16.91342 -16.57955 -16.12517 -15.29931 -15.06052 -14.35309 -14.16325 -13.86148 -13.41605 -13.24305 -12.82573 -12.74010 -12.11323 -12.00487 -11.52024 -11.38866 -11.17397 -10.87511 -10.65646 -10.52605 -10.01955 -9.74463 -9.69691 -9.32316 -9.24390 -9.07930 -8.67368 -6.84346 -5.39004 0.75128 0.88142 2.01016 2.06654 3.05214 3.15702 3.24890 3.47886 3.92633 4.22783 4.31360 4.38028 4.51889 4.57385 4.76122 5.09214 5.26395 5.41959 5.48930 5.60340 5.82816 6.04429 6.10359 6.31349 6.42790 7.43032 7.60420 7.63059 8.14867 8.66487 10.27806 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.032948 B = 0.005981 C = 0.005372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.630092 B = 4680.715382 C = 5210.842593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.153 3.847 3 Si 0.801 3.199 4 H -0.245 1.245 5 H -0.255 1.255 6 H -0.220 1.220 7 C -1.017 5.017 8 H 0.121 0.879 9 S 2.675 3.325 10 O -1.006 7.006 11 O -1.006 7.006 12 N -1.118 6.118 13 C 0.162 3.838 14 C -0.038 4.038 15 C -0.145 4.145 16 C 0.097 3.903 17 N -0.473 5.473 18 C 0.109 3.891 19 C -0.080 4.080 20 Cl -0.038 7.038 21 H 0.281 0.719 22 H 0.407 0.593 23 H 0.096 0.904 24 H 0.083 0.917 25 H 0.149 0.851 26 H 0.163 0.837 27 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.716 -11.763 -2.616 14.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.066 4.066 3 Si 0.621 3.379 4 H -0.169 1.169 5 H -0.179 1.179 6 H -0.142 1.142 7 C -1.151 5.151 8 H 0.139 0.861 9 S 2.777 3.223 10 O -0.996 6.996 11 O -0.995 6.995 12 N -0.873 5.873 13 C 0.035 3.965 14 C -0.048 4.048 15 C -0.166 4.166 16 C -0.060 4.060 17 N -0.182 5.182 18 C -0.049 4.049 19 C -0.109 4.109 20 Cl -0.009 7.009 21 H 0.091 0.909 22 H 0.238 0.762 23 H 0.114 0.886 24 H 0.101 0.899 25 H 0.167 0.833 26 H 0.181 0.819 27 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 9.599 -11.476 -2.788 15.219 hybrid contribution -0.794 1.108 0.265 1.389 sum 8.805 -10.368 -2.523 13.835 Atomic orbital electron populations 1.69979 1.06581 1.29113 1.39467 1.24418 0.94795 0.98835 0.88583 0.87863 0.83588 0.84514 0.81907 1.16910 1.17875 1.14229 1.30448 1.15571 1.02190 1.66925 0.86058 1.01403 0.77299 0.70234 0.73373 1.93482 1.85549 1.75505 1.45091 1.93411 1.84957 1.75741 1.45417 1.55504 1.74520 1.31277 1.25970 1.20081 0.97829 0.87666 0.90875 1.20481 0.92580 0.96588 0.95184 1.22235 1.02450 0.92004 0.99864 1.22879 0.89106 0.98787 0.95184 1.67799 1.12882 1.26627 1.10877 1.22783 1.00405 0.86162 0.95575 1.22164 0.94265 0.90189 1.04317 1.98431 1.81419 1.31309 1.89739 0.90850 0.76198 0.88636 0.89908 0.83282 0.81944 0.81862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.36 13.96 55.43 0.77 -22.59 15 2 C 0.15 4.34 5.47 -17.82 -0.10 4.24 15 3 Si 0.80 20.39 26.54 -169.99 -4.51 15.88 15 4 H -0.25 -6.09 7.11 56.52 0.40 -5.69 15 5 H -0.25 -5.96 7.11 56.52 0.40 -5.55 15 6 H -0.22 -5.72 5.61 56.52 0.32 -5.41 15 7 C -1.02 -27.58 10.26 30.60 0.31 -27.27 15 8 H 0.12 3.26 8.06 -52.49 -0.42 2.84 15 9 S 2.68 65.03 4.24 -107.50 -0.46 64.58 15 10 O -1.01 -26.68 16.02 -57.17 -0.92 -27.60 15 11 O -1.01 -25.99 16.30 -57.17 -0.93 -26.92 15 12 N -1.12 -20.47 5.97 -11.65 -0.07 -20.54 15 13 C 0.16 2.54 5.76 -5.20 -0.03 2.51 15 14 C -0.04 -0.50 5.32 -104.29 -0.55 -1.05 15 15 C -0.14 -1.53 9.77 -39.44 -0.39 -1.92 15 16 C 0.10 0.96 11.18 -17.55 -0.20 0.77 15 17 N -0.47 -5.50 10.36 -13.22 -0.14 -5.64 15 18 C 0.11 1.24 10.99 -17.51 -0.19 1.05 15 19 C -0.08 -1.03 6.34 -39.36 -0.25 -1.28 15 20 Cl -0.04 -0.54 27.81 -51.86 -1.44 -1.98 15 21 H 0.28 7.25 8.31 -40.82 -0.34 6.91 15 22 H 0.41 6.55 8.65 -34.47 -0.30 6.26 15 23 H 0.10 1.58 7.29 -51.93 -0.38 1.21 15 24 H 0.08 1.20 8.01 -51.93 -0.42 0.78 15 25 H 0.15 1.26 8.05 -52.49 -0.42 0.84 15 26 H 0.16 1.10 8.06 -52.49 -0.42 0.68 15 27 H 0.16 1.49 8.06 -52.48 -0.42 1.06 15 LS Contribution 270.57 15.07 4.08 4.08 Total: -1.00 -32.75 270.57 -7.01 -39.76 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -2.00 Total: 3.93 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -1.39 Total: -22.95 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 0.57 Total: -48.76 kcal Atomic # 8 Polarization: -52.67 SS G_CDS: -1.85 Total: -54.52 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.51 Total: 15.88 kcal Atomic # 16 Polarization: 65.03 SS G_CDS: -0.46 Total: 64.58 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.44 Total: -1.98 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.75 -7.01 -39.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704412903.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.535 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds