Wall clock time and date at job start Mon Mar 30 2020 01:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31428 * 1 3 3 Si 1.86794 * 119.99510 * 2 1 4 4 H 1.48502 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47406 * 300.00116 * 3 2 1 6 6 H 1.48508 * 109.47124 * 60.00219 * 3 2 1 7 7 C 1.38797 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00094 * 180.02562 * 7 2 1 9 9 O 1.34844 * 120.00059 * 359.97438 * 7 2 1 10 10 C 1.34885 * 117.00217 * 180.02562 * 9 7 2 11 11 O 1.21662 * 119.99777 * 359.97438 * 10 9 7 12 12 C 1.46429 * 120.00037 * 180.02562 * 10 9 7 13 13 C 1.37112 * 126.13600 * 180.02562 * 12 10 9 14 14 N 1.30529 * 114.00050 * 179.75076 * 13 12 10 15 15 C 1.30339 * 117.34295 * 0.47436 * 14 13 12 16 16 C 1.47841 * 124.73792 * 179.80607 * 15 14 13 17 17 C 1.39512 * 119.74297 * 359.69965 * 16 15 14 18 18 C 1.38420 * 119.05251 * 179.97438 * 17 16 15 19 19 C 1.38765 * 118.51681 * 0.02562 * 18 17 16 20 20 C 1.38381 * 119.39493 * 0.25407 * 19 18 17 21 21 N 1.31664 * 120.90947 * 359.47324 * 20 19 18 22 22 S 1.70920 * 110.52267 * 359.54502 * 15 14 13 23 23 H 0.97001 * 120.00768 * 359.97438 * 1 2 3 24 24 H 1.07998 * 122.99584 * 359.96661 * 13 12 10 25 25 H 1.08003 * 120.47643 * 359.97438 * 17 16 15 26 26 H 1.08001 * 120.73842 * 180.02562 * 18 17 16 27 27 H 1.08002 * 120.29984 * 179.97438 * 19 18 17 28 28 H 1.07989 * 119.54357 * 179.74692 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7082 1.3466 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3965 1.2126 7 6 2.0083 -1.2020 -0.0005 8 1 3.0883 -1.2020 -0.0001 9 8 1.3342 -2.3698 -0.0005 10 6 2.0688 -3.5010 -0.0005 11 8 3.2837 -3.4373 -0.0010 12 6 1.4040 -4.8057 -0.0011 13 6 2.0236 -6.0289 -0.0007 14 7 1.1998 -7.0413 0.0038 15 6 -0.0761 -6.7750 -0.0023 16 6 -1.1490 -7.7922 -0.0027 17 6 -0.8179 -9.1474 -0.0025 18 6 -1.8338 -10.0876 -0.0024 19 6 -3.1482 -9.6426 -0.0029 20 6 -3.4049 -8.2829 -0.0090 21 7 -2.4204 -7.4087 -0.0038 22 16 -0.3356 -5.0856 -0.0025 23 1 -0.4851 0.8400 0.0004 24 1 3.0974 -6.1442 -0.0004 25 1 0.2164 -9.4586 -0.0025 26 1 -1.6085 -11.1438 -0.0018 27 1 -3.9633 -10.3512 -0.0032 28 1 -4.4269 -7.9340 -0.0136 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727886184.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:44 Heat of formation + Delta-G solvation = 5.880398 kcal Electronic energy + Delta-G solvation = -17286.525192 eV Core-core repulsion = 14202.134093 eV Total energy + Delta-G solvation = -3084.391099 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.035 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.34937 -39.39865 -38.58290 -35.26104 -32.86542 -32.37005 -32.24243 -29.56375 -26.53521 -25.31144 -23.77535 -23.01988 -21.71520 -19.27201 -18.52747 -17.85795 -16.75735 -16.50475 -15.79085 -15.69392 -15.04880 -15.01640 -14.43296 -14.42477 -13.92033 -13.65635 -13.41661 -13.29570 -12.56045 -12.02224 -11.77531 -11.37264 -11.09221 -10.64813 -10.48473 -10.17248 -10.01257 -9.91974 -9.74035 -9.49258 -9.23727 -9.06651 -8.74661 -8.27308 -6.60745 -4.19835 0.05576 1.07160 1.24220 1.53676 2.09705 2.78738 3.08519 3.11402 3.19450 3.59140 3.71257 3.81034 3.84586 4.42748 4.60927 4.63540 4.80897 4.88976 4.99855 5.08843 5.31707 5.58743 5.61272 5.86022 5.96517 6.34249 6.44520 6.59675 7.21932 7.68230 7.75194 7.85650 8.52252 8.86099 9.62935 10.55707 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.037753 B = 0.003986 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.476652 B = 7022.290586 C = 7753.922919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.040 3.960 3 Si 0.949 3.051 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.365 4.365 8 H 0.103 0.897 9 O -0.200 6.200 10 C 0.459 3.541 11 O -0.542 6.542 12 C -0.239 4.239 13 C 0.088 3.912 14 N -0.461 5.461 15 C 0.020 3.980 16 C 0.199 3.801 17 C -0.127 4.127 18 C -0.077 4.077 19 C -0.171 4.171 20 C 0.108 3.892 21 N -0.475 5.475 22 S 0.301 5.699 23 H 0.274 0.726 24 H 0.189 0.811 25 H 0.147 0.853 26 H 0.139 0.861 27 H 0.137 0.863 28 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.089 -16.130 -0.026 17.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.166 4.166 3 Si 0.773 3.227 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.442 4.442 8 H 0.121 0.879 9 O -0.107 6.107 10 C 0.306 3.694 11 O -0.441 6.441 12 C -0.364 4.364 13 C -0.072 4.072 14 N -0.177 5.177 15 C -0.249 4.249 16 C 0.061 3.939 17 C -0.150 4.150 18 C -0.103 4.103 19 C -0.192 4.192 20 C -0.051 4.051 21 N -0.185 5.185 22 S 0.561 5.439 23 H 0.084 0.916 24 H 0.206 0.794 25 H 0.165 0.835 26 H 0.156 0.844 27 H 0.155 0.845 28 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.978 -14.937 -0.018 16.934 hybrid contribution 1.520 -0.299 0.003 1.549 sum -6.458 -15.236 -0.015 16.548 Atomic orbital electron populations 1.69995 1.06176 1.28303 1.43808 1.25486 0.95953 0.99201 0.95986 0.85513 0.79546 0.79327 0.78336 1.18643 1.19904 1.19911 1.21491 0.92829 0.79410 1.50468 0.87924 1.83933 1.39206 1.13311 1.74227 1.19029 0.85498 0.83679 0.81230 1.90702 1.14080 1.87120 1.52243 1.25784 0.97587 0.97790 1.15196 1.22204 1.00945 0.84209 0.99849 1.66166 1.00574 1.35225 1.15721 1.24704 0.93304 0.97732 1.09145 1.18452 0.88628 0.89825 0.97029 1.22134 1.01580 0.92253 0.99040 1.21592 0.92460 1.00257 0.96009 1.22264 0.97694 0.97431 1.01767 1.22707 0.98091 0.89250 0.95039 1.67502 0.99197 1.39770 1.12068 1.84462 1.01746 0.97851 1.59855 0.91575 0.79426 0.83531 0.84363 0.84487 0.82063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.00 13.67 55.49 0.76 -23.24 15 2 C 0.04 1.09 5.49 -17.52 -0.10 0.99 15 3 Si 0.95 20.54 29.55 -169.99 -5.02 15.52 15 4 H -0.26 -5.60 7.11 56.52 0.40 -5.20 15 5 H -0.27 -5.72 7.11 56.52 0.40 -5.32 15 6 H -0.27 -5.73 7.11 56.52 0.40 -5.32 15 7 C -0.37 -10.58 9.65 30.94 0.30 -10.28 15 8 H 0.10 2.97 6.86 -52.49 -0.36 2.61 15 9 O -0.20 -5.73 9.64 -22.03 -0.21 -5.94 15 10 C 0.46 11.84 7.87 34.03 0.27 12.11 15 11 O -0.54 -14.84 16.12 -19.39 -0.31 -15.16 15 12 C -0.24 -5.10 6.53 -36.69 -0.24 -5.34 15 13 C 0.09 1.64 11.16 -18.51 -0.21 1.43 15 14 N -0.46 -8.04 10.00 -11.96 -0.12 -8.16 15 15 C 0.02 0.34 7.16 -14.26 -0.10 0.24 15 16 C 0.20 2.92 6.75 -83.04 -0.56 2.36 15 17 C -0.13 -1.49 9.71 -39.04 -0.38 -1.87 15 18 C -0.08 -0.67 10.17 -39.32 -0.40 -1.07 15 19 C -0.17 -1.37 10.11 -39.33 -0.40 -1.77 15 20 C 0.11 1.09 11.18 -17.57 -0.20 0.90 15 21 N -0.48 -6.67 10.01 -9.84 -0.10 -6.77 15 22 S 0.30 5.67 22.73 -107.50 -2.44 3.23 15 23 H 0.27 7.04 8.31 -40.82 -0.34 6.70 15 24 H 0.19 3.17 8.06 -52.49 -0.42 2.74 15 25 H 0.15 1.65 7.78 -52.48 -0.41 1.24 15 26 H 0.14 0.78 8.06 -52.49 -0.42 0.35 15 27 H 0.14 0.66 8.06 -52.49 -0.42 0.23 15 28 H 0.16 1.14 8.06 -52.49 -0.42 0.72 15 LS Contribution 283.98 15.07 4.28 4.28 Total: -1.00 -33.00 283.98 -6.78 -39.78 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: -1.59 Total: -1.24 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -2.01 Total: -2.30 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.54 Total: -38.17 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.52 Total: -21.10 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 5.67 SS G_CDS: -2.44 Total: 3.23 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -33.00 -6.78 -39.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727886184.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.658 kcal (2) G-P(sol) polarization free energy of solvation -33.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds