Wall clock time and date at job start Mon Mar 30 2020 01:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31428 * 1 3 3 Si 1.86794 * 119.99510 * 2 1 4 4 H 1.48502 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47406 * 300.00116 * 3 2 1 6 6 H 1.48508 * 109.47124 * 60.00219 * 3 2 1 7 7 C 1.38797 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00094 * 180.02562 * 7 2 1 9 9 O 1.34844 * 120.00059 * 359.97438 * 7 2 1 10 10 C 1.34885 * 117.00217 * 180.02562 * 9 7 2 11 11 O 1.21662 * 119.99777 * 359.97438 * 10 9 7 12 12 C 1.46429 * 120.00037 * 180.02562 * 10 9 7 13 13 C 1.37112 * 126.13600 * 180.02562 * 12 10 9 14 14 N 1.30529 * 114.00050 * 179.75076 * 13 12 10 15 15 C 1.30339 * 117.34295 * 0.47436 * 14 13 12 16 16 C 1.47841 * 124.73792 * 179.80607 * 15 14 13 17 17 C 1.39512 * 119.74297 * 359.69965 * 16 15 14 18 18 C 1.38420 * 119.05251 * 179.97438 * 17 16 15 19 19 C 1.38765 * 118.51681 * 0.02562 * 18 17 16 20 20 C 1.38381 * 119.39493 * 0.25407 * 19 18 17 21 21 N 1.31664 * 120.90947 * 359.47324 * 20 19 18 22 22 S 1.70920 * 110.52267 * 359.54502 * 15 14 13 23 23 H 0.97001 * 120.00768 * 359.97438 * 1 2 3 24 24 H 1.07998 * 122.99584 * 359.96661 * 13 12 10 25 25 H 1.08003 * 120.47643 * 359.97438 * 17 16 15 26 26 H 1.08001 * 120.73842 * 180.02562 * 18 17 16 27 27 H 1.08002 * 120.29984 * 179.97438 * 19 18 17 28 28 H 1.07989 * 119.54357 * 179.74692 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7082 1.3466 0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8893 2.3965 1.2126 7 6 2.0083 -1.2020 -0.0005 8 1 3.0883 -1.2020 -0.0001 9 8 1.3342 -2.3698 -0.0005 10 6 2.0688 -3.5010 -0.0005 11 8 3.2837 -3.4373 -0.0010 12 6 1.4040 -4.8057 -0.0011 13 6 2.0236 -6.0289 -0.0007 14 7 1.1998 -7.0413 0.0038 15 6 -0.0761 -6.7750 -0.0023 16 6 -1.1490 -7.7922 -0.0027 17 6 -0.8179 -9.1474 -0.0025 18 6 -1.8338 -10.0876 -0.0024 19 6 -3.1482 -9.6426 -0.0029 20 6 -3.4049 -8.2829 -0.0090 21 7 -2.4204 -7.4087 -0.0038 22 16 -0.3356 -5.0856 -0.0025 23 1 -0.4851 0.8400 0.0004 24 1 3.0974 -6.1442 -0.0004 25 1 0.2164 -9.4586 -0.0025 26 1 -1.6085 -11.1438 -0.0018 27 1 -3.9633 -10.3512 -0.0032 28 1 -4.4269 -7.9340 -0.0136 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727886184.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:44 Heat of formation + Delta-G solvation = -16.519339 kcal Electronic energy + Delta-G solvation = -17287.496517 eV Core-core repulsion = 14202.134093 eV Total energy + Delta-G solvation = -3085.362424 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.035 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.47155 -41.07219 -40.21534 -37.33784 -34.41414 -33.77426 -33.30304 -30.99535 -28.12713 -27.07796 -24.76159 -24.12169 -23.37282 -20.67322 -20.25506 -19.85004 -18.10480 -17.81068 -17.04241 -16.91293 -16.87498 -16.39599 -16.17641 -15.88491 -15.42196 -14.80484 -14.61503 -14.48028 -13.99226 -13.69804 -13.27901 -12.83111 -12.63451 -12.49265 -12.19171 -12.06679 -11.48230 -11.09167 -11.09022 -10.86530 -10.76773 -10.55043 -10.52449 -9.54781 -8.62867 -6.39916 -1.29367 0.01444 0.12321 0.32061 0.58767 1.23978 1.33321 1.45303 1.52860 1.95508 2.02680 2.40212 2.62438 2.83676 2.92505 3.62872 3.74411 4.00534 4.02323 4.09665 4.18861 4.51758 4.62207 4.83434 4.89630 5.08199 5.13070 5.22393 5.68587 5.71140 6.31036 6.44111 6.80119 6.84001 7.56652 8.57400 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.037753 B = 0.003986 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.476652 B = 7022.290586 C = 7753.922919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C -0.003 4.003 3 Si 1.024 2.976 4 H -0.262 1.262 5 H -0.258 1.258 6 H -0.258 1.258 7 C -0.418 4.418 8 H 0.089 0.911 9 O -0.229 6.229 10 C 0.469 3.531 11 O -0.566 6.566 12 C -0.297 4.297 13 C 0.125 3.875 14 N -0.469 5.469 15 C 0.066 3.934 16 C 0.147 3.853 17 C -0.122 4.122 18 C -0.072 4.072 19 C -0.140 4.140 20 C 0.096 3.904 21 N -0.505 5.505 22 S 0.286 5.714 23 H 0.283 0.717 24 H 0.206 0.794 25 H 0.149 0.851 26 H 0.179 0.821 27 H 0.183 0.817 28 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.720 -19.254 -0.028 21.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.204 4.204 3 Si 0.842 3.158 4 H -0.186 1.186 5 H -0.182 1.182 6 H -0.182 1.182 7 C -0.494 4.494 8 H 0.107 0.893 9 O -0.137 6.137 10 C 0.317 3.683 11 O -0.466 6.466 12 C -0.420 4.420 13 C -0.037 4.037 14 N -0.184 5.184 15 C -0.204 4.204 16 C 0.011 3.989 17 C -0.146 4.146 18 C -0.098 4.098 19 C -0.160 4.160 20 C -0.064 4.064 21 N -0.216 5.216 22 S 0.547 5.453 23 H 0.093 0.907 24 H 0.222 0.778 25 H 0.167 0.833 26 H 0.196 0.804 27 H 0.200 0.800 28 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -9.602 -18.044 -0.020 20.440 hybrid contribution 1.763 0.067 0.003 1.764 sum -7.839 -17.978 -0.017 19.612 Atomic orbital electron populations 1.70074 1.07769 1.29847 1.45210 1.26686 0.96987 1.02450 0.94308 0.84483 0.77834 0.74078 0.79397 1.18590 1.18207 1.18220 1.21645 0.92594 0.80505 1.54608 0.89315 1.83956 1.39787 1.13962 1.75977 1.19706 0.85447 0.84569 0.78587 1.90645 1.15249 1.87901 1.52776 1.25389 0.99000 0.96359 1.21247 1.22556 1.01880 0.83426 0.95820 1.66340 1.00532 1.33980 1.17571 1.25456 0.94067 0.97337 1.03510 1.18411 0.88451 0.90177 1.01881 1.22297 1.02830 0.91410 0.98057 1.22086 0.91844 1.01587 0.94276 1.22814 0.98799 0.97144 0.97273 1.23347 0.98384 0.90192 0.94450 1.67407 0.99567 1.41820 1.12840 1.84484 1.00478 0.99727 1.60585 0.90740 0.77789 0.83323 0.80371 0.79973 0.79348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.70 13.67 21.63 0.30 -52.40 15 2 C 0.00 -0.16 5.49 84.89 0.47 0.31 15 3 Si 1.02 43.22 29.55 68.60 2.03 45.24 15 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 15 5 H -0.26 -10.12 7.11 99.48 0.71 -9.41 15 6 H -0.26 -10.13 7.11 99.48 0.71 -9.42 15 7 C -0.42 -25.74 9.65 67.95 0.66 -25.08 15 8 H 0.09 5.50 6.86 -2.91 -0.02 5.48 15 9 O -0.23 -14.03 9.64 9.88 0.10 -13.93 15 10 C 0.47 25.70 7.87 69.95 0.55 26.25 15 11 O -0.57 -32.66 16.12 19.31 0.31 -32.35 15 12 C -0.30 -13.19 6.53 24.14 0.16 -13.03 15 13 C 0.12 4.66 11.16 84.62 0.94 5.61 15 14 N -0.47 -16.01 10.00 -191.76 -1.92 -17.93 15 15 C 0.07 2.22 7.16 87.46 0.63 2.85 15 16 C 0.15 4.09 6.75 41.85 0.28 4.37 15 17 C -0.12 -2.49 9.71 22.62 0.22 -2.27 15 18 C -0.07 -0.87 10.17 22.44 0.23 -0.65 15 19 C -0.14 -1.45 10.11 22.43 0.23 -1.22 15 20 C 0.10 1.57 11.18 84.75 0.95 2.52 15 21 N -0.51 -13.27 10.01 -185.06 -1.85 -15.12 15 22 S 0.29 11.18 22.73 -56.49 -1.28 9.90 15 23 H 0.28 14.98 8.31 -92.71 -0.77 14.21 15 24 H 0.21 6.83 8.06 -2.91 -0.02 6.81 15 25 H 0.15 2.91 7.78 -2.91 -0.02 2.89 15 26 H 0.18 0.79 8.06 -2.91 -0.02 0.77 15 27 H 0.18 0.34 8.06 -2.91 -0.02 0.32 15 28 H 0.19 1.90 8.06 -2.92 -0.02 1.88 15 Total: -1.00 -77.76 283.98 4.19 -73.57 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: 1.21 Total: 3.36 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 5.30 Total: -0.34 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -3.48 Total: -85.45 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: 0.41 Total: -46.28 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 11.18 SS G_CDS: -1.28 Total: 9.90 kcal Total: -77.76 4.19 -73.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727886184.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.051 kcal (2) G-P(sol) polarization free energy of solvation -77.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds