Wall clock time and date at job start Mon Mar 30 2020 01:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00121 * 2 1 4 4 H 1.48494 * 109.47210 * 269.99973 * 3 2 1 5 5 H 1.48501 * 109.47136 * 30.00350 * 3 2 1 6 6 H 1.48502 * 109.46805 * 150.00221 * 3 2 1 7 7 C 1.38812 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99664 * 359.97438 * 7 2 1 9 9 O 1.34852 * 120.00143 * 179.97438 * 7 2 1 10 10 C 1.34726 * 116.99816 * 179.97438 * 9 7 2 11 11 O 1.21508 * 120.00439 * 0.02562 * 10 9 7 12 12 C 1.47682 * 119.99797 * 179.97438 * 10 9 7 13 13 C 1.39616 * 120.12393 * 0.02562 * 12 10 9 14 14 C 1.38430 * 119.78196 * 180.02562 * 13 12 10 15 15 O 1.35913 * 119.97761 * 179.97438 * 14 13 12 16 16 C 1.38875 * 120.04048 * 359.97438 * 14 13 12 17 17 C 1.38260 * 120.25380 * 0.25753 * 16 14 13 18 18 C 1.37982 * 120.21885 * 359.48078 * 17 16 14 19 19 C 1.50692 * 120.02319 * 180.25902 * 18 17 16 20 20 F 1.39897 * 109.47525 * 0.25916 * 19 18 17 21 21 F 1.39903 * 109.47330 * 120.25904 * 19 18 17 22 22 F 1.39899 * 109.47164 * 240.25717 * 19 18 17 23 23 H 0.97003 * 119.99939 * 359.97438 * 1 2 3 24 24 H 1.07997 * 120.10831 * 0.03822 * 13 12 10 25 25 H 0.96703 * 113.99789 * 270.02428 * 15 14 13 26 26 H 1.08002 * 119.86883 * 179.97438 * 16 14 13 27 27 H 1.08001 * 119.88853 * 179.72595 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4457 2.6527 0.7001 6 1 3.5458 1.4400 0.7000 7 6 2.0082 -1.2022 -0.0005 8 1 1.4681 -2.1375 -0.0005 9 8 3.3567 -1.2022 -0.0011 10 6 3.9682 -2.4027 -0.0010 11 8 3.3065 -3.4218 -0.0010 12 6 5.4430 -2.4801 -0.0022 13 6 6.2060 -1.3108 -0.0027 14 6 7.5880 -1.3916 -0.0043 15 8 8.3346 -0.2559 -0.0054 16 6 8.2119 -2.6323 -0.0048 17 6 7.4578 -3.7912 -0.0091 18 6 6.0797 -3.7231 -0.0021 19 6 5.2622 -4.9890 -0.0009 20 9 6.1172 -6.0963 -0.0017 21 9 4.4565 -5.0228 1.1423 22 9 4.4539 -5.0232 -1.1422 23 1 -0.4850 0.8401 0.0004 24 1 5.7197 -0.3466 -0.0017 25 1 8.5493 0.0728 -0.8891 26 1 9.2902 -2.6921 -0.0065 27 1 7.9492 -4.7530 -0.0139 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787547850.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:39 Heat of formation + Delta-G solvation = -235.507747 kcal Electronic energy + Delta-G solvation = -21672.513911 eV Core-core repulsion = 17560.753074 eV Total energy + Delta-G solvation = -4111.760837 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 276.044 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.60965 -47.20336 -46.89669 -40.18219 -38.96759 -36.96040 -35.40328 -32.54712 -31.48501 -30.86725 -26.33053 -25.20909 -23.74739 -22.03813 -20.62816 -18.58335 -18.18639 -18.04688 -17.87213 -17.79167 -16.77558 -15.75832 -15.32418 -15.03733 -14.92614 -14.49912 -14.03613 -13.90934 -13.83420 -13.41604 -13.37631 -13.11361 -13.09848 -12.65139 -12.47897 -12.30032 -12.25032 -11.41584 -11.35825 -10.93159 -10.62973 -10.49715 -9.86171 -9.35022 -9.17354 -9.02634 -8.83293 -6.55142 -4.23819 0.54306 0.95549 2.86008 3.02218 3.13104 3.14346 3.25482 3.72015 3.79269 3.94881 4.10147 4.17117 4.42810 4.79420 4.90920 4.92418 4.98726 5.29454 5.30748 5.58716 5.83264 5.92867 6.09535 6.35465 6.42531 7.40671 7.54719 7.86324 8.45508 8.81014 9.46826 10.51756 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.017751 B = 0.007788 C = 0.005605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.011696 B = 3594.628900 C = 4994.611945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.066 3.934 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.367 4.367 8 H 0.116 0.884 9 O -0.233 6.233 10 C 0.425 3.575 11 O -0.515 6.515 12 C -0.020 4.020 13 C -0.109 4.109 14 C 0.128 3.872 15 O -0.494 6.494 16 C -0.139 4.139 17 C -0.065 4.065 18 C -0.153 4.153 19 C 0.519 3.481 20 F -0.191 7.191 21 F -0.162 7.162 22 F -0.162 7.162 23 H 0.284 0.716 24 H 0.153 0.847 25 H 0.395 0.605 26 H 0.141 0.859 27 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.149 -2.840 -1.691 17.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.442 4.442 8 H 0.133 0.867 9 O -0.141 6.141 10 C 0.272 3.728 11 O -0.411 6.411 12 C -0.022 4.022 13 C -0.128 4.128 14 C 0.083 3.917 15 O -0.305 6.305 16 C -0.158 4.158 17 C -0.083 4.083 18 C -0.155 4.155 19 C 0.464 3.536 20 F -0.173 7.173 21 F -0.143 7.143 22 F -0.143 7.143 23 H 0.094 0.906 24 H 0.170 0.830 25 H 0.252 0.748 26 H 0.159 0.841 27 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 16.678 -3.037 -1.080 16.987 hybrid contribution 0.076 0.678 -0.489 0.839 sum 16.754 -2.358 -1.569 16.992 Atomic orbital electron populations 1.69586 1.05819 1.28921 1.45213 1.24612 0.95070 0.98899 0.95388 0.86221 0.80468 0.81232 0.79146 1.19551 1.20388 1.18171 1.20812 0.75815 0.97335 1.50235 0.86690 1.83485 1.24242 1.30697 1.75686 1.20201 0.87188 0.83326 0.82106 1.90784 1.65863 1.35155 1.49294 1.19012 0.91959 0.92080 0.99116 1.21813 0.92868 0.99321 0.98820 1.18483 0.89129 0.86028 0.98069 1.84822 1.71814 1.40044 1.33844 1.21464 1.00894 0.91123 1.02281 1.20780 0.91173 0.99676 0.96718 1.20083 0.94545 0.92129 1.08772 1.17810 0.77971 0.82440 0.75345 1.93108 1.70822 1.56903 1.96475 1.93246 1.74305 1.96488 1.50253 1.93243 1.74189 1.96496 1.50407 0.90590 0.82974 0.74772 0.84127 0.83581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.57 13.96 55.49 0.77 -23.79 15 2 C 0.07 1.83 5.50 -17.52 -0.10 1.73 15 3 Si 0.90 20.47 28.62 -169.99 -4.86 15.60 15 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 15 6 H -0.26 -5.67 7.11 56.52 0.40 -5.26 15 7 C -0.37 -10.64 10.11 30.94 0.31 -10.32 15 8 H 0.12 3.68 7.09 -52.48 -0.37 3.31 15 9 O -0.23 -6.03 7.82 -21.62 -0.17 -6.20 15 10 C 0.42 10.20 7.64 34.59 0.26 10.47 15 11 O -0.52 -13.62 10.53 -19.27 -0.20 -13.82 15 12 C -0.02 -0.37 5.84 -105.00 -0.61 -0.99 15 13 C -0.11 -1.74 9.56 -39.00 -0.37 -2.11 15 14 C 0.13 1.60 6.70 -39.28 -0.26 1.34 15 15 O -0.49 -5.17 13.50 -19.47 -0.26 -5.43 15 16 C -0.14 -1.51 9.98 -39.34 -0.39 -1.90 15 17 C -0.07 -0.81 9.41 -39.67 -0.37 -1.18 15 18 C -0.15 -2.54 5.40 -104.19 -0.56 -3.11 15 19 C 0.52 9.46 2.78 36.00 0.10 9.56 15 20 F -0.19 -2.92 15.97 2.25 0.04 -2.89 15 21 F -0.16 -3.36 15.01 2.25 0.03 -3.32 15 22 F -0.16 -3.33 15.00 2.25 0.03 -3.30 15 23 H 0.28 7.37 8.31 -40.82 -0.34 7.03 15 24 H 0.15 2.47 7.61 -52.49 -0.40 2.07 15 25 H 0.40 2.09 9.06 45.56 0.41 2.50 15 26 H 0.14 1.08 8.06 -52.49 -0.42 0.66 15 27 H 0.15 1.41 7.15 -52.49 -0.38 1.04 15 LS Contribution 261.94 15.07 3.95 3.95 Total: -1.00 -32.62 261.94 -2.96 -35.58 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: -0.29 Total: 0.14 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -2.00 Total: 3.49 kcal Atomic # 7 Polarization: -24.57 SS G_CDS: 0.77 Total: -23.79 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.63 Total: -25.46 kcal Atomic # 9 Polarization: -9.61 SS G_CDS: 0.10 Total: -9.51 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.86 Total: 15.60 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.62 -2.96 -35.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787547850.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -199.926 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds