Wall clock time and date at job start Mon Mar 30 2020 01:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00121 * 2 1 4 4 H 1.48494 * 109.47210 * 269.99973 * 3 2 1 5 5 H 1.48501 * 109.47136 * 30.00350 * 3 2 1 6 6 H 1.48502 * 109.46805 * 150.00221 * 3 2 1 7 7 C 1.38812 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99664 * 359.97438 * 7 2 1 9 9 O 1.34852 * 120.00143 * 179.97438 * 7 2 1 10 10 C 1.34726 * 116.99816 * 179.97438 * 9 7 2 11 11 O 1.21508 * 120.00439 * 0.02562 * 10 9 7 12 12 C 1.47682 * 119.99797 * 179.97438 * 10 9 7 13 13 C 1.39616 * 120.12393 * 0.02562 * 12 10 9 14 14 C 1.38430 * 119.78196 * 180.02562 * 13 12 10 15 15 O 1.35913 * 119.97761 * 179.97438 * 14 13 12 16 16 C 1.38875 * 120.04048 * 359.97438 * 14 13 12 17 17 C 1.38260 * 120.25380 * 0.25753 * 16 14 13 18 18 C 1.37982 * 120.21885 * 359.48078 * 17 16 14 19 19 C 1.50692 * 120.02319 * 180.25902 * 18 17 16 20 20 F 1.39897 * 109.47525 * 0.25916 * 19 18 17 21 21 F 1.39903 * 109.47330 * 120.25904 * 19 18 17 22 22 F 1.39899 * 109.47164 * 240.25717 * 19 18 17 23 23 H 0.97003 * 119.99939 * 359.97438 * 1 2 3 24 24 H 1.07997 * 120.10831 * 0.03822 * 13 12 10 25 25 H 0.96703 * 113.99789 * 270.02428 * 15 14 13 26 26 H 1.08002 * 119.86883 * 179.97438 * 16 14 13 27 27 H 1.08001 * 119.88853 * 179.72595 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4457 2.6527 0.7001 6 1 3.5458 1.4400 0.7000 7 6 2.0082 -1.2022 -0.0005 8 1 1.4681 -2.1375 -0.0005 9 8 3.3567 -1.2022 -0.0011 10 6 3.9682 -2.4027 -0.0010 11 8 3.3065 -3.4218 -0.0010 12 6 5.4430 -2.4801 -0.0022 13 6 6.2060 -1.3108 -0.0027 14 6 7.5880 -1.3916 -0.0043 15 8 8.3346 -0.2559 -0.0054 16 6 8.2119 -2.6323 -0.0048 17 6 7.4578 -3.7912 -0.0091 18 6 6.0797 -3.7231 -0.0021 19 6 5.2622 -4.9890 -0.0009 20 9 6.1172 -6.0963 -0.0017 21 9 4.4565 -5.0228 1.1423 22 9 4.4539 -5.0232 -1.1422 23 1 -0.4850 0.8401 0.0004 24 1 5.7197 -0.3466 -0.0017 25 1 8.5493 0.0728 -0.8891 26 1 9.2902 -2.6921 -0.0065 27 1 7.9492 -4.7530 -0.0139 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787547850.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:39 Heat of formation + Delta-G solvation = -259.534317 kcal Electronic energy + Delta-G solvation = -21673.555781 eV Core-core repulsion = 17560.753074 eV Total energy + Delta-G solvation = -4112.802707 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 276.044 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -51.06597 -48.61979 -48.46845 -41.65731 -40.48269 -38.11653 -37.26257 -34.61343 -32.74139 -32.03226 -28.14691 -26.70862 -25.12588 -23.33763 -22.13974 -20.33402 -19.77378 -19.38083 -19.35291 -19.22005 -18.39073 -17.07607 -16.90235 -16.71520 -16.16348 -15.87437 -15.67956 -15.39606 -15.29804 -14.93175 -14.74095 -14.67298 -14.52827 -14.37858 -14.13191 -13.73902 -13.36795 -13.18095 -12.76572 -12.46476 -12.36452 -11.99532 -11.82636 -11.21883 -10.89773 -10.34141 -10.11506 -8.61943 -6.46887 -0.68981 -0.14500 1.30120 1.30315 1.49547 1.56156 1.64311 2.09239 2.23930 2.30820 2.71687 2.88126 3.06880 3.10156 3.44875 3.67962 3.85785 4.04486 4.17623 4.36053 4.69887 4.77539 4.94713 5.10839 5.37936 5.44391 5.79759 6.38423 6.71543 6.76170 7.41240 8.50443 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.017751 B = 0.007788 C = 0.005605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.011696 B = 3594.628900 C = 4994.611945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.019 3.981 3 Si 0.982 3.018 4 H -0.254 1.254 5 H -0.263 1.263 6 H -0.247 1.247 7 C -0.405 4.405 8 H 0.059 0.941 9 O -0.240 6.240 10 C 0.430 3.570 11 O -0.546 6.546 12 C -0.057 4.057 13 C -0.112 4.112 14 C 0.147 3.853 15 O -0.494 6.494 16 C -0.102 4.102 17 C -0.051 4.051 18 C -0.162 4.162 19 C 0.511 3.489 20 F -0.171 7.171 21 F -0.184 7.184 22 F -0.183 7.183 23 H 0.292 0.708 24 H 0.144 0.856 25 H 0.422 0.578 26 H 0.193 0.807 27 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.279 -1.551 -1.841 22.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.183 4.183 3 Si 0.800 3.200 4 H -0.178 1.178 5 H -0.188 1.188 6 H -0.171 1.171 7 C -0.481 4.481 8 H 0.077 0.923 9 O -0.148 6.148 10 C 0.278 3.722 11 O -0.443 6.443 12 C -0.058 4.058 13 C -0.131 4.131 14 C 0.101 3.899 15 O -0.309 6.309 16 C -0.120 4.120 17 C -0.068 4.068 18 C -0.164 4.164 19 C 0.457 3.543 20 F -0.153 7.153 21 F -0.166 7.166 22 F -0.165 7.165 23 H 0.103 0.897 24 H 0.162 0.838 25 H 0.284 0.716 26 H 0.210 0.790 27 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 21.826 -1.766 -1.253 21.933 hybrid contribution -1.221 0.065 -0.453 1.304 sum 20.605 -1.701 -1.706 20.746 Atomic orbital electron populations 1.69683 1.07677 1.30572 1.46768 1.25620 0.95993 1.02788 0.93854 0.85113 0.79196 0.75488 0.80178 1.17833 1.18752 1.17086 1.20383 0.77255 0.96088 1.54352 0.92294 1.83491 1.22373 1.31450 1.77512 1.21474 0.89735 0.82323 0.78685 1.90756 1.67610 1.36192 1.49704 1.18722 0.88368 0.94483 1.04251 1.21833 0.94659 0.97750 0.98874 1.18430 0.87657 0.87637 0.96128 1.84782 1.70731 1.39179 1.36194 1.22002 1.03128 0.89244 0.97583 1.21217 0.88871 1.02128 0.94601 1.20129 0.96188 0.89947 1.10141 1.18162 0.77995 0.84148 0.74022 1.93133 1.69761 1.56063 1.96300 1.93194 1.75282 1.96707 1.51389 1.93194 1.75125 1.96707 1.51436 0.89745 0.83819 0.71594 0.79006 0.80085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.82 13.96 21.63 0.30 -54.51 15 2 C 0.02 1.07 5.50 84.89 0.47 1.54 15 3 Si 0.98 42.67 28.62 68.60 1.96 44.63 15 4 H -0.25 -10.30 7.11 99.48 0.71 -9.60 15 5 H -0.26 -10.66 7.11 99.48 0.71 -9.96 15 6 H -0.25 -10.21 7.11 99.48 0.71 -9.50 15 7 C -0.41 -25.27 10.11 67.96 0.69 -24.58 15 8 H 0.06 4.20 7.09 -2.91 -0.02 4.18 15 9 O -0.24 -13.04 7.82 11.42 0.09 -12.95 15 10 C 0.43 21.74 7.64 70.32 0.54 22.27 15 11 O -0.55 -31.04 10.53 19.81 0.21 -30.83 15 12 C -0.06 -2.11 5.84 -20.11 -0.12 -2.23 15 13 C -0.11 -3.30 9.56 22.65 0.22 -3.09 15 14 C 0.15 2.90 6.70 22.47 0.15 3.05 15 15 O -0.49 -7.34 13.50 -92.58 -1.25 -8.59 15 16 C -0.10 -1.50 9.98 22.43 0.22 -1.28 15 17 C -0.05 -0.99 9.41 22.21 0.21 -0.78 15 18 C -0.16 -5.11 5.40 -19.58 -0.11 -5.21 15 19 C 0.51 18.65 2.78 71.23 0.20 18.85 15 20 F -0.17 -4.92 15.97 44.97 0.72 -4.20 15 21 F -0.18 -7.96 15.01 44.97 0.68 -7.28 15 22 F -0.18 -7.82 15.00 44.97 0.67 -7.14 15 23 H 0.29 15.79 8.31 -92.71 -0.77 15.02 15 24 H 0.14 4.44 7.61 -2.91 -0.02 4.42 15 25 H 0.42 1.79 9.06 -74.06 -0.67 1.11 15 26 H 0.19 1.11 8.06 -2.91 -0.02 1.09 15 27 H 0.18 2.34 7.15 -2.91 -0.02 2.32 15 Total: -1.00 -79.69 261.94 6.44 -73.25 By element: Atomic # 1 Polarization: -1.51 SS G_CDS: 0.59 Total: -0.92 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 2.47 Total: 8.55 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.30 Total: -54.51 kcal Atomic # 8 Polarization: -51.42 SS G_CDS: -0.95 Total: -52.37 kcal Atomic # 9 Polarization: -20.70 SS G_CDS: 2.07 Total: -18.63 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.96 Total: 44.63 kcal Total: -79.69 6.44 -73.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787547850.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.285 kcal (2) G-P(sol) polarization free energy of solvation -79.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -265.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -259.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds