Wall clock time and date at job start Mon Mar 30 2020 01:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29028 * 124.91305 * 2 1 4 4 C 1.31783 * 117.12550 * 180.02562 * 3 2 1 5 5 C 1.50699 * 122.75171 * 179.97438 * 4 3 2 6 6 S 1.81399 * 109.47054 * 90.02210 * 5 4 3 7 7 O 1.42100 * 110.54409 * 291.62542 * 6 5 4 8 8 O 1.42103 * 110.54456 * 68.37321 * 6 5 4 9 9 N 1.65601 * 104.44938 * 179.97438 * 6 5 4 10 10 C 1.46505 * 119.99942 * 65.00328 * 9 6 5 11 11 C 1.50694 * 109.46974 * 164.99764 * 10 9 6 12 12 H 1.08005 * 120.00241 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99690 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00157 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99986 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47267 * 89.99733 * 15 13 11 17 17 H 1.48496 * 109.47238 * 209.99961 * 15 13 11 18 18 H 1.48501 * 109.46966 * 329.99675 * 15 13 11 19 19 C 1.33642 * 114.49833 * 0.22890 * 4 3 2 20 20 S 1.70973 * 124.91869 * 180.02562 * 2 1 3 21 21 H 1.08999 * 109.47716 * 89.99820 * 1 2 3 22 22 H 1.08997 * 109.47318 * 209.99874 * 1 2 3 23 23 H 1.09007 * 109.47519 * 329.99810 * 1 2 3 24 24 H 1.09000 * 109.47247 * 330.02239 * 5 4 3 25 25 H 1.09001 * 109.47358 * 210.01665 * 5 4 3 26 26 H 0.97000 * 120.00249 * 244.99577 * 9 6 5 27 27 H 1.09006 * 109.46339 * 284.99628 * 10 9 6 28 28 H 1.08998 * 109.46913 * 44.99310 * 10 9 6 29 29 H 0.96997 * 119.99735 * 180.02562 * 14 13 11 30 30 H 1.07994 * 126.03919 * 179.77343 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2454 1.0581 0.0000 4 6 3.5511 0.8795 -0.0005 5 6 4.5306 2.0247 -0.0012 6 16 4.9248 2.4841 1.7088 7 8 3.7927 3.0630 2.3433 8 8 5.6728 1.4550 2.3419 9 7 5.9975 3.7374 1.5632 10 6 5.5675 5.0038 0.9652 11 6 6.5802 6.0755 1.2764 12 1 7.4562 5.8373 1.8614 13 6 6.3883 7.3603 0.8141 14 7 5.3218 7.6503 0.1013 15 14 7.6439 8.6887 1.1992 16 1 8.6726 8.7228 0.1287 17 1 6.9633 10.0064 1.2738 18 1 8.2940 8.3929 2.5011 19 6 3.9354 -0.4005 -0.0059 20 16 2.4856 -1.4019 -0.0006 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5139 24 1 4.0900 2.8794 -0.5146 25 1 5.4428 1.7224 -0.5156 26 1 6.9104 3.6330 1.8739 27 1 5.4839 4.8855 -0.1152 28 1 4.5988 5.2890 1.3756 29 1 5.1871 8.5540 -0.2242 30 1 4.9544 -0.7579 -0.0106 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790451060.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:43 Heat of formation + Delta-G solvation = -62.356622 kcal Electronic energy + Delta-G solvation = -16875.501379 eV Core-core repulsion = 13923.595252 eV Total energy + Delta-G solvation = -2951.906127 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 276.039 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.05834 -38.20390 -37.06768 -36.49311 -34.29675 -34.14944 -30.59704 -28.86160 -28.73386 -24.50718 -24.10101 -21.01647 -20.44385 -19.31207 -18.84995 -18.07246 -17.43565 -17.28550 -16.53293 -16.27595 -15.87831 -15.32377 -14.93247 -14.63117 -14.37041 -14.11979 -13.89109 -13.63329 -13.60505 -13.24907 -13.13117 -13.05015 -12.75639 -12.64449 -12.54352 -12.19398 -12.06731 -11.42871 -10.86820 -10.75079 -10.52705 -10.18117 -9.72531 -8.25979 -6.38596 -0.89526 -0.34263 0.27343 0.55146 1.44344 1.46078 1.56872 1.57369 1.83808 2.41067 2.64177 2.95996 3.08882 3.22384 3.59114 3.84868 4.21505 4.28643 4.35711 4.56805 4.63458 4.66463 4.88114 5.14621 5.23850 5.28393 5.72799 5.96836 6.30097 6.61869 6.75877 7.31416 8.85295 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.036357 B = 0.004248 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.952560 B = 6589.577925 C = 6963.644111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.034 3.966 3 N -0.510 5.510 4 C 0.038 3.962 5 C -0.538 4.538 6 S 2.619 3.381 7 O -0.996 6.996 8 O -0.982 6.982 9 N -1.104 6.104 10 C 0.251 3.749 11 C -0.551 4.551 12 H 0.074 0.926 13 C 0.008 3.992 14 N -0.927 5.927 15 Si 0.974 3.026 16 H -0.267 1.267 17 H -0.283 1.283 18 H -0.265 1.265 19 C -0.253 4.253 20 S 0.204 5.796 21 H 0.107 0.893 22 H 0.111 0.889 23 H 0.083 0.917 24 H 0.146 0.854 25 H 0.183 0.817 26 H 0.417 0.583 27 H 0.022 0.978 28 H 0.006 0.994 29 H 0.269 0.731 30 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.223 -19.031 -3.846 20.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.244 4.244 3 N -0.226 5.226 4 C -0.095 4.095 5 C -0.670 4.670 6 S 2.713 3.287 7 O -0.986 6.986 8 O -0.972 6.972 9 N -0.865 5.865 10 C 0.126 3.874 11 C -0.591 4.591 12 H 0.092 0.908 13 C -0.192 4.192 14 N -0.566 5.566 15 Si 0.798 3.202 16 H -0.192 1.192 17 H -0.209 1.209 18 H -0.190 1.190 19 C -0.394 4.394 20 S 0.459 5.541 21 H 0.125 0.875 22 H 0.130 0.870 23 H 0.102 0.898 24 H 0.165 0.835 25 H 0.200 0.800 26 H 0.253 0.747 27 H 0.040 0.960 28 H 0.024 0.976 29 H 0.078 0.922 30 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -6.296 -19.784 -3.171 21.002 hybrid contribution 1.508 1.940 -0.492 2.506 sum -4.788 -17.844 -3.663 18.834 Atomic orbital electron populations 1.20710 0.82403 1.05530 1.05538 1.27810 1.03788 0.91173 1.01668 1.66076 1.04700 1.34092 1.17739 1.19167 0.89841 0.93220 1.07243 1.29122 1.07280 1.05117 1.25488 1.04524 0.73380 0.72975 0.77796 1.93528 1.54463 1.77126 1.73489 1.93507 1.71008 1.58613 1.74072 1.55317 1.26563 1.26629 1.77971 1.18770 0.95466 0.80567 0.92582 1.21628 1.08020 0.94552 1.34851 0.90759 1.25918 0.97782 1.01035 0.94497 1.70059 1.28619 1.21527 1.36391 0.85307 0.78396 0.77399 0.79059 1.19235 1.20881 1.18963 1.27437 1.06537 0.95419 1.10018 1.83530 0.94561 1.09880 1.66106 0.87506 0.87028 0.89819 0.83538 0.79962 0.74746 0.96010 0.97552 0.92196 0.77227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 10.46 71.23 0.75 -0.48 16 2 C 0.03 0.79 7.39 88.52 0.65 1.44 16 3 N -0.51 -16.38 10.53 -179.41 -1.89 -18.27 16 4 C 0.04 1.16 6.00 41.52 0.25 1.41 16 5 C -0.54 -16.48 6.50 71.24 0.46 -16.01 16 6 S 2.62 101.16 5.44 -56.49 -0.31 100.85 16 7 O -1.00 -47.93 17.50 -127.65 -2.23 -50.16 16 8 O -0.98 -38.30 18.08 -127.65 -2.31 -40.61 16 9 N -1.10 -45.82 5.88 -190.78 -1.12 -46.94 16 10 C 0.25 12.82 5.89 85.63 0.50 13.32 16 11 C -0.55 -29.99 9.27 25.60 0.24 -29.75 16 12 H 0.07 3.81 7.65 -2.91 -0.02 3.79 16 13 C 0.01 0.42 5.46 84.65 0.46 0.88 16 14 N -0.93 -53.99 13.29 21.45 0.28 -53.70 16 15 Si 0.97 42.60 29.54 68.60 2.03 44.62 16 16 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 17 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 19 C -0.25 -5.87 11.13 66.78 0.74 -5.13 16 20 S 0.20 3.66 23.18 -56.49 -1.31 2.35 16 21 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 22 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.08 1.45 8.14 -2.38 -0.02 1.44 16 24 H 0.15 4.74 8.14 -2.39 -0.02 4.72 16 25 H 0.18 4.04 8.12 -2.39 -0.02 4.02 16 26 H 0.42 15.69 8.50 -96.74 -0.82 14.87 16 27 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.01 0.37 7.70 -2.39 -0.02 0.35 16 29 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 30 H 0.21 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -76.28 295.89 -2.45 -78.73 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.35 Total: 17.45 kcal Atomic # 6 Polarization: -38.38 SS G_CDS: 4.06 Total: -34.32 kcal Atomic # 7 Polarization: -116.19 SS G_CDS: -2.73 Total: -118.91 kcal Atomic # 8 Polarization: -86.23 SS G_CDS: -4.54 Total: -90.77 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 16 Polarization: 104.82 SS G_CDS: -1.62 Total: 103.20 kcal Total: -76.28 -2.45 -78.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790451060.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.375 kcal (2) G-P(sol) polarization free energy of solvation -76.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds