Wall clock time and date at job start Mon Mar 30 2020 01:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86792 * 119.99825 * 2 1 4 4 H 1.48508 * 109.47168 * 270.00135 * 3 2 1 5 5 H 1.48498 * 109.47633 * 29.99994 * 3 2 1 6 6 H 1.48505 * 109.47168 * 150.00235 * 3 2 1 7 7 C 1.38947 * 119.99731 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99602 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00470 * 359.97438 * 7 2 1 10 10 C 1.34769 * 120.00099 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00409 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00151 * 180.02562 * 10 9 7 13 13 N 1.46507 * 109.47349 * 179.97438 * 12 10 9 14 14 C 1.34779 * 119.99657 * 179.97438 * 13 12 10 15 15 O 1.21279 * 119.99926 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.99423 * 180.02562 * 14 13 12 17 17 S 1.82983 * 110.81240 * 210.00066 * 16 14 13 18 18 C 1.81588 * 102.07633 * 142.80140 * 17 16 14 19 19 C 1.53277 * 110.68077 * 2.63236 * 18 17 16 20 20 S 1.82810 * 107.35881 * 330.44445 * 19 18 17 21 21 H 0.97000 * 119.99785 * 0.02562 * 1 2 3 22 22 H 0.96995 * 119.99790 * 0.02562 * 9 7 2 23 23 H 1.08996 * 109.46985 * 59.99869 * 12 10 9 24 24 H 1.09001 * 109.47020 * 299.99600 * 12 10 9 25 25 H 0.97000 * 119.99901 * 0.02562 * 13 12 10 26 26 H 1.09000 * 110.88065 * 86.50121 * 16 14 13 27 27 H 1.09002 * 109.23094 * 122.93675 * 18 17 16 28 28 H 1.08997 * 109.22675 * 242.33699 * 18 17 16 29 29 H 1.09011 * 109.87408 * 89.92528 * 19 18 17 30 30 H 1.08995 * 109.87899 * 211.06632 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5579 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1959 -5.9765 -0.0016 14 6 1.7466 -7.2472 -0.0017 15 8 0.5542 -7.4687 -0.0008 16 6 2.7259 -8.3926 -0.0016 17 16 2.0226 -9.8493 -0.8569 18 6 3.4747 -10.5250 -1.7128 19 6 4.7291 -9.7116 -1.3751 20 16 4.1925 -7.9975 -1.0347 21 1 -0.4850 0.8401 -0.0004 22 1 0.3535 -2.3907 -0.0005 23 1 0.6175 -4.9205 -0.8913 24 1 0.6169 -4.9209 0.8887 25 1 3.1496 -5.7992 -0.0012 26 1 3.0255 -8.6475 1.0149 27 1 3.6239 -11.5598 -1.4044 28 1 3.3045 -10.4922 -2.7889 29 1 5.2160 -10.1298 -0.4940 30 1 5.4166 -9.7223 -2.2209 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804822267.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:16 Heat of formation + Delta-G solvation = -87.054195 kcal Electronic energy + Delta-G solvation = -16493.061171 eV Core-core repulsion = 13540.084077 eV Total energy + Delta-G solvation = -2952.977094 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 276.039 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.13505 -39.94217 -36.31758 -35.46094 -34.31438 -33.41006 -31.68445 -28.80035 -26.34162 -24.73723 -22.10463 -21.46623 -20.15881 -19.39804 -18.08228 -17.84919 -17.39328 -16.82185 -16.77532 -16.41859 -16.02407 -15.88129 -15.62214 -14.93040 -14.82714 -14.06416 -14.02294 -13.65951 -13.54686 -13.49097 -12.92894 -12.88681 -12.46810 -12.12789 -12.00641 -11.58584 -11.46689 -10.84783 -10.60102 -10.38309 -10.11045 -9.20399 -8.83329 -8.52242 -6.02683 -0.14154 0.06149 0.61430 1.35464 1.42583 1.43879 1.54713 1.55267 1.76394 1.87944 2.28835 3.03888 3.14701 3.33099 3.47044 3.74182 3.84031 4.16899 4.34848 4.35898 4.45758 4.53970 4.65548 5.04328 5.37256 5.89437 6.18983 6.46121 6.82062 7.01938 7.41174 7.91793 8.64597 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.043021 B = 0.003593 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.693644 B = 7791.069160 C = 8315.053809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.086 0.914 9 N -0.556 5.556 10 C 0.431 3.569 11 O -0.623 6.623 12 C 0.120 3.880 13 N -0.695 5.695 14 C 0.546 3.454 15 O -0.547 6.547 16 C -0.037 4.037 17 S -0.232 6.232 18 C -0.087 4.087 19 C -0.068 4.068 20 S -0.259 6.259 21 H 0.280 0.720 22 H 0.399 0.601 23 H 0.098 0.902 24 H 0.102 0.898 25 H 0.414 0.586 26 H 0.165 0.835 27 H 0.143 0.857 28 H 0.116 0.884 29 H 0.125 0.875 30 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.393 -19.813 -2.017 21.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.104 0.896 9 N -0.192 5.192 10 C 0.218 3.782 11 O -0.511 6.511 12 C -0.008 4.008 13 N -0.349 5.349 14 C 0.329 3.671 15 O -0.425 6.425 16 C -0.278 4.278 17 S -0.007 6.007 18 C -0.237 4.237 19 C -0.218 4.218 20 S -0.034 6.034 21 H 0.090 0.910 22 H 0.234 0.766 23 H 0.116 0.884 24 H 0.120 0.880 25 H 0.253 0.747 26 H 0.183 0.817 27 H 0.161 0.839 28 H 0.134 0.866 29 H 0.143 0.857 30 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 6.592 -19.123 -2.347 20.363 hybrid contribution 0.765 0.493 0.466 1.022 sum 7.357 -18.631 -1.881 20.119 Atomic orbital electron populations 1.69682 1.07009 1.29700 1.49111 1.26135 0.96541 1.02679 0.95667 0.84862 0.77930 0.76420 0.78742 1.19539 1.19579 1.19417 1.19746 0.92990 0.83502 1.50513 0.89574 1.41813 1.09599 1.04518 1.63229 1.20333 0.88113 0.85860 0.83884 1.90490 1.15143 1.87451 1.58029 1.20890 0.91460 0.83615 1.04790 1.45667 1.11667 1.04182 1.73414 1.19356 0.88409 0.82988 0.76319 1.90745 1.16542 1.84504 1.50730 1.25879 0.97173 0.97593 1.07153 1.87771 1.20791 1.29742 1.62404 1.24230 0.90963 1.03701 1.04839 1.24314 0.99999 0.88530 1.08913 1.88647 1.33168 1.17033 1.64564 0.91009 0.76629 0.88402 0.87979 0.74699 0.81729 0.83930 0.86583 0.85675 0.82878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.66 13.05 21.66 0.28 -48.38 16 2 C -0.01 -0.49 5.50 84.92 0.47 -0.02 16 3 Si 1.00 41.81 29.55 68.60 2.03 43.84 16 4 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 7 C -0.34 -18.73 9.68 84.04 0.81 -17.92 16 8 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 9 N -0.56 -28.12 5.29 -306.99 -1.62 -29.75 16 10 C 0.43 20.23 7.85 87.66 0.69 20.92 16 11 O -0.62 -32.89 15.24 -3.08 -0.05 -32.94 16 12 C 0.12 4.48 6.15 85.63 0.53 5.01 16 13 N -0.69 -24.12 5.35 -466.78 -2.50 -26.62 16 14 C 0.55 17.80 7.34 87.66 0.64 18.44 16 15 O -0.55 -20.90 16.36 -3.03 -0.05 -20.95 16 16 C -0.04 -0.89 4.05 71.23 0.29 -0.61 16 17 S -0.23 -5.20 21.77 -46.19 -1.01 -6.21 16 18 C -0.09 -0.96 6.79 72.07 0.49 -0.47 16 19 C -0.07 -0.69 6.97 72.07 0.50 -0.19 16 20 S -0.26 -5.73 21.15 -46.19 -0.98 -6.70 16 21 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 22 H 0.40 19.34 7.90 -92.71 -0.73 18.60 16 23 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 24 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 25 H 0.41 14.74 6.35 -92.71 -0.59 14.15 16 26 H 0.17 3.26 8.14 -2.39 -0.02 3.24 16 27 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.15 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -69.25 290.13 0.40 -68.85 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: -0.13 Total: 33.70 kcal Atomic # 6 Polarization: 20.74 SS G_CDS: 4.42 Total: 25.16 kcal Atomic # 7 Polarization: -100.91 SS G_CDS: -3.84 Total: -104.74 kcal Atomic # 8 Polarization: -53.79 SS G_CDS: -0.10 Total: -53.89 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: -10.93 SS G_CDS: -1.98 Total: -12.91 kcal Total: -69.25 0.40 -68.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804822267.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.207 kcal (2) G-P(sol) polarization free energy of solvation -69.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds