Wall clock time and date at job start Mon Mar 30 2020 01:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00280 * 2 1 4 4 H 1.48496 * 109.47455 * 268.90464 * 3 2 1 5 5 H 1.48497 * 109.46882 * 28.90314 * 3 2 1 6 6 H 1.48505 * 109.47048 * 148.90027 * 3 2 1 7 7 C 1.38820 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99920 * 34.88456 * 7 2 1 9 9 N 1.36931 * 119.99893 * 215.16561 * 7 2 1 10 10 C 1.46504 * 120.00301 * 36.05063 * 9 7 2 11 11 C 1.50699 * 109.47487 * 95.19911 * 10 9 7 12 12 O 1.20828 * 119.99654 * 354.75333 * 11 10 9 13 13 O 1.34229 * 120.00171 * 174.74541 * 11 10 9 14 14 C 1.46502 * 120.00070 * 216.04534 * 9 7 2 15 15 C 1.50704 * 109.47096 * 90.00097 * 14 9 7 16 16 C 1.33568 * 126.02178 * 89.99933 * 15 14 9 17 17 N 1.31858 * 114.51559 * 180.02562 * 16 15 14 18 18 C 1.29139 * 117.07528 * 0.02562 * 17 16 15 19 19 Cl 1.73601 * 124.92341 * 180.02562 * 18 17 16 20 20 S 1.70980 * 110.15543 * 359.72145 * 18 17 16 21 21 H 0.97000 * 119.99738 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47151 * 215.20998 * 10 9 7 23 23 H 1.09004 * 109.46425 * 335.20056 * 10 9 7 24 24 H 0.96692 * 116.99605 * 180.02562 * 13 11 10 25 25 H 1.09001 * 109.47300 * 209.99888 * 14 9 7 26 26 H 1.08999 * 109.47100 * 330.00156 * 14 9 7 27 27 H 1.08002 * 122.73632 * 359.96751 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5210 2.0331 -1.3997 5 1 1.4363 2.6592 0.6767 6 1 3.5360 1.4469 0.7232 7 6 2.0103 -1.2022 -0.0005 8 1 1.6158 -2.0532 -0.5359 9 7 3.1922 -1.3107 0.6824 10 6 3.3710 -0.6052 1.9539 11 6 3.0468 -1.5353 3.0944 12 8 2.6113 -2.6394 2.8684 13 8 3.2419 -1.1371 4.3614 14 6 4.2779 -2.1324 0.1417 15 6 5.1571 -1.2850 -0.7416 16 6 6.2298 -0.5924 -0.3496 17 7 6.8337 0.0734 -1.3143 18 6 6.3278 -0.0200 -2.4988 19 17 6.9560 0.7674 -3.9127 20 16 4.9545 -1.0383 -2.4744 21 1 -0.4850 0.8401 0.0004 22 1 4.4044 -0.2696 2.0410 23 1 2.7050 0.2571 1.9876 24 1 3.0198 -1.7686 5.0591 25 1 4.8701 -2.5377 0.9622 26 1 3.8576 -2.9512 -0.4422 27 1 6.5737 -0.5781 0.6741 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833067762.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:31 Heat of formation + Delta-G solvation = -40.976415 kcal Electronic energy + Delta-G solvation = -17095.585748 eV Core-core repulsion = 14006.729936 eV Total energy + Delta-G solvation = -3088.855812 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.012 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.01900 -40.60340 -38.07647 -37.71090 -36.64315 -34.14084 -32.17187 -29.46125 -27.83547 -25.79673 -23.93669 -22.26637 -21.14915 -19.34492 -19.03411 -18.91617 -17.67098 -16.93554 -16.70941 -16.40096 -16.19691 -15.58035 -15.30044 -14.92223 -14.78224 -14.25174 -13.90474 -13.28340 -13.01235 -12.74839 -12.73142 -12.56062 -12.47152 -12.24264 -11.98894 -11.76496 -11.36655 -10.80362 -10.69952 -10.30251 -9.78971 -9.11435 -8.36883 -5.63154 -0.44596 -0.18977 0.72114 0.91670 1.27637 1.42054 1.44573 1.50897 1.69945 2.27320 2.33571 2.94904 3.30651 3.67067 4.07477 4.21479 4.31856 4.53690 4.69786 4.71901 4.93865 5.08600 5.76064 5.81929 6.12561 6.48746 6.73037 7.24646 7.46347 7.84077 8.81766 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.020441 B = 0.007051 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.437796 B = 3970.194179 C = 4585.527834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.013 3.987 3 Si 0.886 3.114 4 H -0.291 1.291 5 H -0.294 1.294 6 H -0.231 1.231 7 C -0.270 4.270 8 H 0.047 0.953 9 N -0.571 5.571 10 C 0.146 3.854 11 C 0.452 3.548 12 O -0.540 6.540 13 O -0.520 6.520 14 C 0.216 3.784 15 C -0.208 4.208 16 C 0.029 3.971 17 N -0.478 5.478 18 C 0.034 3.966 19 Cl 0.024 6.976 20 S 0.203 5.797 21 H 0.268 0.732 22 H 0.120 0.880 23 H 0.084 0.916 24 H 0.416 0.584 25 H 0.100 0.900 26 H 0.070 0.930 27 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.950 -0.365 0.225 12.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.188 4.188 3 Si 0.711 3.289 4 H -0.219 1.219 5 H -0.220 1.220 6 H -0.153 1.153 7 C -0.399 4.399 8 H 0.065 0.935 9 N -0.290 5.290 10 C 0.018 3.982 11 C 0.292 3.708 12 O -0.429 6.429 13 O -0.333 6.333 14 C 0.089 3.911 15 C -0.332 4.332 16 C -0.122 4.122 17 N -0.196 5.196 18 C -0.268 4.268 19 Cl 0.051 6.949 20 S 0.453 5.547 21 H 0.077 0.923 22 H 0.137 0.863 23 H 0.102 0.898 24 H 0.277 0.723 25 H 0.118 0.882 26 H 0.088 0.912 27 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 12.614 -0.240 -0.988 12.655 hybrid contribution -0.062 0.726 0.852 1.121 sum 12.552 0.486 -0.137 12.562 Atomic orbital electron populations 1.70166 1.08000 1.28082 1.48703 1.25850 0.94982 1.00284 0.97714 0.86757 0.81686 0.81907 0.78558 1.21879 1.22013 1.15345 1.18446 0.96172 0.94942 1.30382 0.93548 1.43878 1.12094 1.56929 1.16073 1.21221 1.03374 0.92432 0.81199 1.25712 0.73121 0.87774 0.84162 1.90638 1.42449 1.24265 1.85529 1.84570 1.80233 1.51286 1.17210 1.19649 0.86599 0.90503 0.94342 1.27507 1.01263 1.07993 0.96477 1.21784 0.93982 0.96583 0.99814 1.65974 1.32332 1.22395 0.98860 1.27141 1.00057 1.05897 0.93716 1.98389 1.86355 1.78540 1.31597 1.84353 1.23298 1.40606 1.06474 0.92273 0.86284 0.89818 0.72347 0.88175 0.91160 0.77896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.78 13.97 21.65 0.30 -52.47 15 2 C 0.01 0.68 4.97 84.86 0.42 1.10 15 3 Si 0.89 40.44 26.46 68.60 1.82 42.25 15 4 H -0.29 -13.80 7.11 99.48 0.71 -13.09 15 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 15 6 H -0.23 -9.28 5.79 99.48 0.58 -8.71 15 7 C -0.27 -13.79 9.78 84.04 0.82 -12.97 15 8 H 0.05 2.68 8.06 -2.91 -0.02 2.66 15 9 N -0.57 -23.47 1.55 -710.66 -1.10 -24.58 15 10 C 0.15 5.35 4.53 85.63 0.39 5.74 15 11 C 0.45 16.18 8.39 71.24 0.60 16.78 15 12 O -0.54 -23.33 17.20 21.96 0.38 -22.95 15 13 O -0.52 -14.08 13.42 -51.41 -0.69 -14.77 15 14 C 0.22 7.18 6.22 85.63 0.53 7.71 15 15 C -0.21 -6.53 6.18 24.63 0.15 -6.38 15 16 C 0.03 0.86 11.25 83.63 0.94 1.80 15 17 N -0.48 -15.36 10.55 -194.44 -2.05 -17.41 15 18 C 0.03 1.05 8.03 130.64 1.05 2.10 15 19 Cl 0.02 0.63 29.33 -2.72 -0.08 0.55 15 20 S 0.20 6.42 23.22 -56.49 -1.31 5.11 15 21 H 0.27 14.74 8.31 -92.71 -0.77 13.96 15 22 H 0.12 3.42 8.11 -2.39 -0.02 3.40 15 23 H 0.08 3.37 4.55 -2.38 -0.01 3.36 15 24 H 0.42 7.50 9.10 -74.06 -0.67 6.82 15 25 H 0.10 2.76 8.07 -2.39 -0.02 2.74 15 26 H 0.07 2.42 8.04 -2.39 -0.02 2.40 15 27 H 0.20 4.60 8.06 -2.91 -0.02 4.58 15 Total: -1.00 -65.73 277.35 2.59 -63.14 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: 0.43 Total: 5.26 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: 4.90 Total: 15.87 kcal Atomic # 7 Polarization: -91.61 SS G_CDS: -2.85 Total: -94.47 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -0.31 Total: -37.72 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 1.82 Total: 42.25 kcal Atomic # 16 Polarization: 6.42 SS G_CDS: -1.31 Total: 5.11 kcal Atomic # 17 Polarization: 0.63 SS G_CDS: -0.08 Total: 0.55 kcal Total: -65.73 2.59 -63.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067762.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.163 kcal (2) G-P(sol) polarization free energy of solvation -65.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds