Wall clock time and date at job start Mon Mar 30 2020 01:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.37788 * 119.99956 * 179.97438 * 11 10 9 13 13 N 1.30248 * 124.71439 * 0.03073 * 12 11 10 14 14 C 1.30902 * 117.27632 * 179.97438 * 13 12 11 15 15 Cl 1.73601 * 123.02429 * 180.02562 * 14 13 12 16 16 C 1.37035 * 113.95156 * 0.02562 * 14 13 12 17 17 C 1.41543 * 126.12044 * 179.97438 * 16 14 13 18 18 O 1.21705 * 119.99990 * 359.97438 * 17 16 14 19 19 O 1.34964 * 120.00052 * 179.97438 * 17 16 14 20 20 S 1.70903 * 124.71729 * 179.72340 * 12 11 10 21 21 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 23 23 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 24 24 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 25 25 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 26 26 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 27 27 H 0.96698 * 113.99984 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4864 -2.6366 -0.0009 12 6 6.1754 -3.8299 -0.0003 13 7 5.6190 -5.0076 -0.0003 14 6 6.4148 -6.0470 -0.0001 15 17 5.8342 -7.6830 -0.0007 16 6 7.7474 -5.7274 0.0005 17 6 8.8254 -6.6446 0.0013 18 8 8.6058 -7.8417 0.0020 19 8 10.0967 -6.1918 0.0014 20 16 7.8786 -3.9705 -0.0069 21 1 -0.4850 0.8401 0.0004 22 1 3.8751 -0.6805 0.8889 23 1 3.8745 -0.6801 -0.8910 24 1 3.6584 -3.1503 0.8892 25 1 3.6578 -3.1506 -0.8908 26 1 5.9715 -1.7966 -0.0006 27 1 10.7637 -6.8919 0.0024 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833760245.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:18 Heat of formation + Delta-G solvation = -51.640031 kcal Electronic energy + Delta-G solvation = -16008.584803 eV Core-core repulsion = 12919.266581 eV Total energy + Delta-G solvation = -3089.318221 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.012 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.52986 -39.60924 -37.02539 -36.16256 -36.00061 -33.20336 -31.06148 -29.82826 -26.05754 -24.63878 -22.95970 -21.28894 -19.70048 -19.38012 -17.95241 -17.11752 -16.66839 -16.33529 -16.11406 -15.22818 -15.18271 -14.41279 -14.27684 -14.02328 -13.36839 -12.75665 -12.28318 -12.25556 -11.69151 -11.66369 -11.38046 -11.21335 -10.71573 -10.64159 -10.35793 -10.13486 -9.95354 -9.84343 -9.51159 -9.49149 -8.73697 -7.88621 -6.22506 -4.24399 0.09626 0.72548 1.04077 1.96153 2.20147 2.87222 3.08100 3.16272 3.23223 3.23932 3.25488 4.26504 4.50100 5.07391 5.09694 5.47004 5.69269 5.92657 6.24886 6.29618 6.49026 6.79690 6.98553 7.00758 7.47227 7.63343 7.74241 8.29781 8.80641 9.36198 10.90107 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.034675 B = 0.003884 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.306234 B = 7208.109331 C = 7994.965412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.071 3.929 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.526 4.526 8 H 0.078 0.922 9 C -0.023 4.023 10 C 0.132 3.868 11 N -0.656 5.656 12 C 0.355 3.645 13 N -0.553 5.553 14 C 0.283 3.717 15 Cl 0.028 6.972 16 C -0.367 4.367 17 C 0.566 3.434 18 O -0.508 6.508 19 O -0.510 6.510 20 S 0.182 5.818 21 H 0.266 0.734 22 H 0.024 0.976 23 H 0.020 0.980 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.418 0.582 27 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.117 -8.240 0.008 20.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.131 4.131 3 Si 0.709 3.291 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.565 4.565 8 H 0.096 0.904 9 C -0.061 4.061 10 C 0.008 3.992 11 N -0.288 5.288 12 C -0.015 4.015 13 N -0.281 5.281 14 C 0.112 3.888 15 Cl 0.057 6.943 16 C -0.494 4.494 17 C 0.411 3.589 18 O -0.399 6.399 19 O -0.321 6.321 20 S 0.431 5.569 21 H 0.076 0.924 22 H 0.043 0.957 23 H 0.038 0.962 24 H 0.092 0.908 25 H 0.092 0.908 26 H 0.256 0.744 27 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 18.553 -7.428 0.001 19.985 hybrid contribution 0.415 -0.141 -0.008 0.439 sum 18.968 -7.569 -0.007 20.423 Atomic orbital electron populations 1.69890 1.06283 1.27236 1.49713 1.24991 0.94785 0.99158 0.94210 0.86764 0.80218 0.83576 0.78573 1.20139 1.21112 1.19140 1.20813 0.88155 0.95060 1.52439 0.90425 1.19837 0.98430 0.90649 0.97163 1.21916 0.73375 1.01093 1.02789 1.44946 1.09170 1.02353 1.72340 1.23718 0.94214 0.90201 0.93368 1.65701 1.36873 0.95952 1.29540 1.20726 0.86317 0.89297 0.92504 1.98446 1.89165 1.11192 1.95478 1.22549 0.94827 0.96319 1.35659 1.17511 0.81834 0.86340 0.73201 1.91004 1.85238 1.16110 1.47520 1.85040 1.16932 1.43240 1.86863 1.84051 1.00628 0.99386 1.72802 0.92371 0.95744 0.96168 0.90770 0.90784 0.74354 0.73321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.96 55.43 0.77 -25.42 15 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 15 3 Si 0.88 20.01 27.47 -169.99 -4.67 15.34 15 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 15 6 H -0.27 -5.66 6.54 56.52 0.37 -5.29 15 7 C -0.53 -13.84 9.66 -34.44 -0.33 -14.17 15 8 H 0.08 2.22 7.99 -52.49 -0.42 1.80 15 9 C -0.02 -0.47 4.16 -27.88 -0.12 -0.59 15 10 C 0.13 2.33 5.86 -4.04 -0.02 2.30 15 11 N -0.66 -9.16 5.68 -62.42 -0.35 -9.51 15 12 C 0.36 5.00 8.04 -88.02 -0.71 4.29 15 13 N -0.55 -8.90 10.06 -11.83 -0.12 -9.02 15 14 C 0.28 4.31 7.41 -18.38 -0.14 4.18 15 15 Cl 0.03 0.42 27.26 -51.86 -1.41 -1.00 15 16 C -0.37 -5.00 6.32 -38.76 -0.25 -5.25 15 17 C 0.57 7.20 8.08 31.99 0.26 7.46 15 18 O -0.51 -7.46 15.73 -19.42 -0.31 -7.76 15 19 O -0.51 -4.75 13.35 -41.22 -0.55 -5.30 15 20 S 0.18 2.07 22.98 -107.50 -2.47 -0.40 15 21 H 0.27 7.29 8.31 -40.82 -0.34 6.96 15 22 H 0.02 0.50 7.20 -51.93 -0.37 0.12 15 23 H 0.02 0.40 7.57 -51.93 -0.39 0.01 15 24 H 0.07 1.39 8.14 -51.93 -0.42 0.96 15 25 H 0.07 1.38 8.14 -51.93 -0.42 0.96 15 26 H 0.42 4.70 8.59 -40.82 -0.35 4.35 15 27 H 0.41 1.89 8.98 45.56 0.41 2.30 15 LS Contribution 277.17 15.07 4.18 4.18 Total: -1.00 -31.05 277.17 -7.47 -38.53 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -1.14 Total: 0.30 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -1.40 Total: 0.08 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.30 Total: -43.95 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -0.86 Total: -13.06 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.67 Total: 15.34 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.47 Total: -0.40 kcal Atomic # 17 Polarization: 0.42 SS G_CDS: -1.41 Total: -1.00 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.05 -7.47 -38.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833760245.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.113 kcal (2) G-P(sol) polarization free energy of solvation -31.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds