Wall clock time and date at job start Mon Mar 30 2020 01:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.37788 * 119.99956 * 179.97438 * 11 10 9 13 13 N 1.30248 * 124.71439 * 0.03073 * 12 11 10 14 14 C 1.30902 * 117.27632 * 179.97438 * 13 12 11 15 15 Cl 1.73601 * 123.02429 * 180.02562 * 14 13 12 16 16 C 1.37035 * 113.95156 * 0.02562 * 14 13 12 17 17 C 1.41543 * 126.12044 * 179.97438 * 16 14 13 18 18 O 1.21705 * 119.99990 * 359.97438 * 17 16 14 19 19 O 1.34964 * 120.00052 * 179.97438 * 17 16 14 20 20 S 1.70903 * 124.71729 * 179.72340 * 12 11 10 21 21 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 23 23 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 24 24 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 25 25 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 26 26 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 27 27 H 0.96698 * 113.99984 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4864 -2.6366 -0.0009 12 6 6.1754 -3.8299 -0.0003 13 7 5.6190 -5.0076 -0.0003 14 6 6.4148 -6.0470 -0.0001 15 17 5.8342 -7.6830 -0.0007 16 6 7.7474 -5.7274 0.0005 17 6 8.8254 -6.6446 0.0013 18 8 8.6058 -7.8417 0.0020 19 8 10.0967 -6.1918 0.0014 20 16 7.8786 -3.9705 -0.0069 21 1 -0.4850 0.8401 0.0004 22 1 3.8751 -0.6805 0.8889 23 1 3.8745 -0.6801 -0.8910 24 1 3.6584 -3.1503 0.8892 25 1 3.6578 -3.1506 -0.8908 26 1 5.9715 -1.7966 -0.0006 27 1 10.7637 -6.8919 0.0024 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833760245.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:18 Heat of formation + Delta-G solvation = -74.428668 kcal Electronic energy + Delta-G solvation = -16009.572992 eV Core-core repulsion = 12919.266581 eV Total energy + Delta-G solvation = -3090.306411 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.012 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.55665 -40.63722 -38.15956 -37.34717 -36.95167 -35.06079 -32.62366 -31.08575 -27.55749 -25.90803 -24.12142 -22.84722 -20.83110 -20.44499 -19.05120 -18.82388 -17.82257 -17.43845 -17.16068 -16.36538 -16.33359 -16.16494 -15.57674 -15.37309 -14.65491 -14.34852 -13.56677 -13.40690 -13.26079 -12.91046 -12.55743 -12.28454 -12.23434 -12.16196 -11.78790 -11.63797 -11.51499 -11.23089 -10.94808 -10.77694 -10.54736 -8.96840 -8.29447 -6.36965 -0.96903 -0.29423 -0.01275 0.90461 1.13608 1.40165 1.42427 1.52910 1.83586 2.04748 2.30866 2.36816 3.06024 3.39390 3.94515 4.23961 4.40053 4.59752 4.72240 5.09179 5.37920 5.45076 5.50182 5.63148 5.80904 6.21364 6.58655 6.72878 6.91212 7.27564 8.86971 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.034675 B = 0.003884 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.306234 B = 7208.109331 C = 7994.965412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.003 3.997 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.290 1.290 6 H -0.234 1.234 7 C -0.536 4.536 8 H 0.032 0.968 9 C -0.016 4.016 10 C 0.152 3.848 11 N -0.651 5.651 12 C 0.332 3.668 13 N -0.584 5.584 14 C 0.261 3.739 15 Cl 0.020 6.980 16 C -0.377 4.377 17 C 0.570 3.430 18 O -0.531 6.531 19 O -0.498 6.498 20 S 0.283 5.717 21 H 0.267 0.733 22 H 0.040 0.960 23 H 0.039 0.961 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.434 0.566 27 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.757 -6.818 0.023 23.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.194 4.194 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.216 1.216 6 H -0.156 1.156 7 C -0.575 4.575 8 H 0.050 0.950 9 C -0.054 4.054 10 C 0.027 3.973 11 N -0.287 5.287 12 C -0.037 4.037 13 N -0.313 5.313 14 C 0.089 3.911 15 Cl 0.049 6.951 16 C -0.504 4.504 17 C 0.415 3.585 18 O -0.423 6.423 19 O -0.311 6.311 20 S 0.534 5.466 21 H 0.076 0.924 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.275 0.725 27 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 22.279 -6.025 0.017 23.079 hybrid contribution -0.604 -0.720 -0.016 0.940 sum 21.675 -6.745 0.001 22.700 Atomic orbital electron populations 1.70074 1.08610 1.28373 1.51914 1.26071 0.95652 1.03847 0.93813 0.85579 0.79785 0.77498 0.79248 1.19133 1.21634 1.15644 1.21195 0.91426 0.93380 1.51470 0.95008 1.19692 0.94524 0.92776 0.98432 1.21302 0.75886 0.98840 1.01249 1.44458 1.07491 1.03188 1.73582 1.23861 0.96192 0.89537 0.94090 1.65633 1.38651 0.96937 1.30053 1.20769 0.86992 0.89061 0.94254 1.98432 1.89363 1.11686 1.95638 1.22976 0.94710 0.98659 1.34053 1.17425 0.82635 0.85719 0.72672 1.91001 1.85812 1.17109 1.48391 1.84979 1.16070 1.44061 1.86026 1.83673 0.96502 0.96241 1.70187 0.92406 0.94188 0.94323 0.92532 0.92520 0.72519 0.70683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.56 13.96 21.45 0.30 -57.26 15 2 C 0.00 0.19 5.47 84.66 0.46 0.65 15 3 Si 0.96 40.27 27.47 68.60 1.88 42.15 15 4 H -0.27 -10.77 7.11 99.48 0.71 -10.06 15 5 H -0.29 -12.37 7.11 99.48 0.71 -11.67 15 6 H -0.23 -8.53 6.54 99.48 0.65 -7.88 15 7 C -0.54 -28.80 9.66 25.60 0.25 -28.56 15 8 H 0.03 1.93 7.99 -2.91 -0.02 1.91 15 9 C -0.02 -0.65 4.16 29.85 0.12 -0.52 15 10 C 0.15 5.34 5.86 86.38 0.51 5.85 15 11 N -0.65 -16.83 5.68 -351.39 -2.00 -18.82 15 12 C 0.33 8.70 8.04 179.44 1.44 10.15 15 13 N -0.58 -18.50 10.06 -191.33 -1.92 -20.42 15 14 C 0.26 7.75 7.41 84.55 0.63 8.37 15 15 Cl 0.02 0.59 27.26 -2.72 -0.07 0.52 15 16 C -0.38 -9.46 6.32 22.80 0.14 -9.32 15 17 C 0.57 13.15 8.08 68.64 0.55 13.70 15 18 O -0.53 -14.80 15.73 19.16 0.30 -14.50 15 19 O -0.50 -7.48 13.35 -58.81 -0.78 -8.26 15 20 S 0.28 5.44 22.98 -56.49 -1.30 4.14 15 21 H 0.27 15.09 8.31 -92.71 -0.77 14.32 15 22 H 0.04 1.49 7.20 -2.39 -0.02 1.48 15 23 H 0.04 1.42 7.57 -2.39 -0.02 1.40 15 24 H 0.06 2.16 8.14 -2.39 -0.02 2.14 15 25 H 0.06 2.16 8.14 -2.39 -0.02 2.14 15 26 H 0.43 8.23 8.59 -92.71 -0.80 7.44 15 27 H 0.43 2.41 8.98 -74.06 -0.67 1.75 15 Total: -1.00 -69.40 277.17 0.25 -69.15 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -0.27 Total: 2.98 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 4.11 Total: 0.32 kcal Atomic # 7 Polarization: -92.88 SS G_CDS: -3.62 Total: -96.50 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.48 Total: -22.76 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 1.88 Total: 42.15 kcal Atomic # 16 Polarization: 5.44 SS G_CDS: -1.30 Total: 4.14 kcal Atomic # 17 Polarization: 0.59 SS G_CDS: -0.07 Total: 0.52 kcal Total: -69.40 0.25 -69.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833760245.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.281 kcal (2) G-P(sol) polarization free energy of solvation -69.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds