Wall clock time and date at job start Mon Mar 30 2020 02:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47304 * 2 1 4 4 C 1.50701 * 109.47126 * 119.99682 * 2 1 3 5 5 H 1.08005 * 120.00284 * 120.00309 * 4 2 1 6 6 C 1.37878 * 119.99783 * 300.00246 * 4 2 1 7 7 N 1.31518 * 119.99946 * 180.02562 * 6 4 2 8 8 Si 1.86794 * 120.00138 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.47041 * 90.00279 * 8 6 4 10 10 H 1.48500 * 109.47194 * 209.99924 * 8 6 4 11 11 H 1.48499 * 109.47243 * 330.00504 * 8 6 4 12 12 O 1.45204 * 109.47400 * 239.99360 * 2 1 3 13 13 C 1.34900 * 116.99571 * 89.99819 * 12 2 1 14 14 O 1.21625 * 119.99852 * 0.02562 * 13 12 2 15 15 C 1.46392 * 119.99629 * 180.02562 * 13 12 2 16 16 S 1.75833 * 125.46412 * 354.06666 * 15 13 12 17 17 C 1.70612 * 91.56313 * 180.02562 * 16 15 13 18 18 C 1.33858 * 110.96432 * 359.97438 * 17 16 15 19 19 C 1.36758 * 125.46189 * 174.08850 * 15 13 12 20 20 C 1.50702 * 123.35211 * 359.71429 * 19 15 13 21 21 F 1.39904 * 109.46942 * 110.48346 * 20 19 15 22 22 F 1.39901 * 109.46866 * 230.47925 * 20 19 15 23 23 H 1.09007 * 109.47050 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47033 * 300.00249 * 1 2 3 25 25 H 1.09000 * 109.47021 * 60.00595 * 1 2 3 26 26 H 0.97004 * 119.99826 * 179.97438 * 7 6 4 27 27 H 1.08006 * 124.51770 * 180.02562 * 17 16 15 28 28 H 1.08005 * 122.44636 * 180.02562 * 18 17 16 29 29 H 1.08999 * 109.47575 * 350.48471 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6991 -0.2392 2.4827 7 7 2.1379 -0.8588 3.5566 8 14 0.6258 1.2799 2.6540 9 1 -0.8021 0.8745 2.6992 10 1 0.9770 1.9955 3.9069 11 1 0.8490 2.1773 1.4921 12 8 2.0140 -0.6846 -1.1855 13 6 2.2182 0.0676 -2.2866 14 8 1.9977 1.2633 -2.2556 15 6 2.7050 -0.5554 -3.5186 16 16 3.2084 -2.2320 -3.6840 17 6 3.5710 -2.0089 -5.3362 18 6 3.3214 -0.7497 -5.7155 19 6 2.8415 0.0733 -4.7254 20 6 2.4939 1.5227 -4.9485 21 9 3.6663 2.2559 -5.1612 22 9 1.6634 1.6359 -6.0685 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 1.9038 -0.5271 4.4376 27 1 3.9504 -2.7810 -5.9892 28 1 3.4856 -0.4056 -6.7260 29 1 1.9764 1.9114 -4.0715 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873504915.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:08 Heat of formation + Delta-G solvation = -165.699342 kcal Electronic energy + Delta-G solvation = -19050.419664 eV Core-core repulsion = 15507.899123 eV Total energy + Delta-G solvation = -3542.520541 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 276.042 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.08807 -48.07387 -41.56860 -39.23406 -37.68101 -35.33840 -32.85198 -31.66468 -28.78205 -27.36245 -25.11694 -24.15647 -22.27274 -20.45314 -20.08649 -18.92299 -18.39317 -18.35741 -18.21573 -17.30933 -17.06159 -16.85831 -15.93357 -15.39132 -15.09331 -15.02496 -14.64245 -14.46918 -14.37315 -14.22406 -14.05711 -13.72553 -13.54013 -13.32329 -12.88443 -12.66837 -12.27114 -12.05905 -11.78605 -11.67383 -11.37960 -11.28172 -10.85402 -10.21640 -9.78759 -8.45293 -6.54776 -0.94932 0.20613 0.77257 1.00551 1.24337 1.32300 1.41025 1.57614 1.62516 2.19236 2.63972 2.87564 3.20938 3.49133 3.69860 3.93722 4.01596 4.16774 4.26724 4.37810 4.48168 4.66265 4.72678 4.95356 4.98780 5.15319 5.29260 5.47454 6.05293 6.48325 6.60913 7.09198 8.70320 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.025041 B = 0.005497 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.918144 B = 5092.318996 C = 5833.117226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.194 3.806 3 H 0.037 0.963 4 C -0.540 4.540 5 H 0.050 0.950 6 C 0.033 3.967 7 N -0.928 5.928 8 Si 0.938 3.062 9 H -0.250 1.250 10 H -0.285 1.285 11 H -0.255 1.255 12 O -0.341 6.341 13 C 0.526 3.474 14 O -0.530 6.530 15 C -0.268 4.268 16 S 0.328 5.672 17 C -0.208 4.208 18 C -0.142 4.142 19 C -0.103 4.103 20 C 0.311 3.689 21 F -0.201 7.201 22 F -0.199 7.199 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.276 0.724 27 H 0.221 0.779 28 H 0.172 0.828 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.481 -1.630 -19.427 19.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.140 3.860 3 H 0.055 0.945 4 C -0.577 4.577 5 H 0.068 0.932 6 C -0.167 4.167 7 N -0.566 5.566 8 Si 0.763 3.237 9 H -0.175 1.175 10 H -0.211 1.211 11 H -0.180 1.180 12 O -0.257 6.257 13 C 0.372 3.628 14 O -0.424 6.424 15 C -0.387 4.387 16 S 0.599 5.401 17 C -0.346 4.346 18 C -0.170 4.170 19 C -0.122 4.122 20 C 0.256 3.744 21 F -0.183 7.183 22 F -0.180 7.180 23 H 0.091 0.909 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.238 0.762 28 H 0.190 0.810 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.522 -2.602 -18.205 18.397 hybrid contribution -0.345 2.001 -0.426 2.075 sum 0.177 -0.601 -18.631 18.641 Atomic orbital electron populations 1.22441 0.95924 1.02933 1.01013 1.20775 0.92301 0.93305 0.79644 0.94505 1.20895 1.33518 1.14173 0.89156 0.93151 1.25524 0.96834 0.99757 0.94611 1.69949 1.46004 1.41823 0.98798 0.86021 0.79956 0.79667 0.78089 1.17530 1.21142 1.17962 1.86595 1.76249 1.42243 1.20565 1.20138 0.73987 0.84821 0.83812 1.90681 1.50975 1.16481 1.84230 1.23543 1.17512 1.03034 0.94608 1.83587 1.52655 1.01195 1.02665 1.26052 1.04945 1.01936 1.01648 1.19883 1.02971 0.92884 1.01216 1.20020 1.02652 0.96623 0.92942 1.20635 0.78140 0.87728 0.87934 1.92979 1.50608 1.78792 1.95896 1.92976 1.71957 1.96679 1.56365 0.90904 0.92350 0.92151 0.91482 0.76202 0.81016 0.84453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.05 9.03 71.98 0.65 -6.40 15 2 C 0.19 9.47 2.16 29.85 0.06 9.54 15 3 H 0.04 1.90 6.22 -2.39 -0.01 1.88 15 4 C -0.54 -30.75 9.48 25.60 0.24 -30.50 15 5 H 0.05 3.16 8.06 -2.91 -0.02 3.14 15 6 C 0.03 1.86 5.45 84.65 0.46 2.32 15 7 N -0.93 -55.59 13.96 21.45 0.30 -55.29 15 8 Si 0.94 42.97 24.37 68.60 1.67 44.64 15 9 H -0.25 -10.55 6.87 99.48 0.68 -9.86 15 10 H -0.28 -12.78 7.11 99.48 0.71 -12.08 15 11 H -0.26 -11.38 6.53 99.48 0.65 -10.73 15 12 O -0.34 -15.11 9.73 -58.15 -0.57 -15.67 15 13 C 0.53 20.67 7.88 69.94 0.55 21.22 15 14 O -0.53 -22.34 13.30 19.43 0.26 -22.09 15 15 C -0.27 -8.17 6.45 24.05 0.16 -8.02 15 16 S 0.33 7.18 22.93 -56.49 -1.30 5.88 15 17 C -0.21 -3.12 10.92 66.82 0.73 -2.39 15 18 C -0.14 -2.74 9.85 21.08 0.21 -2.54 15 19 C -0.10 -2.79 5.40 -20.41 -0.11 -2.90 15 20 C 0.31 8.92 5.40 71.24 0.38 9.30 15 21 F -0.20 -6.02 17.32 44.97 0.78 -5.24 15 22 F -0.20 -5.38 17.21 44.97 0.77 -4.61 15 23 H 0.07 2.95 8.14 -2.38 -0.02 2.93 15 24 H 0.06 2.47 3.27 -2.39 -0.01 2.46 15 25 H 0.06 2.28 8.14 -2.39 -0.02 2.26 15 26 H 0.28 15.27 8.31 -92.71 -0.77 14.50 15 27 H 0.22 1.35 8.06 -2.91 -0.02 1.32 15 28 H 0.17 2.56 8.06 -2.91 -0.02 2.53 15 29 H 0.14 4.37 5.15 -2.39 -0.01 4.36 15 Total: -1.00 -66.41 274.76 6.38 -60.03 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: 1.13 Total: 2.71 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 3.34 Total: -10.36 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: 0.30 Total: -55.29 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -0.31 Total: -37.76 kcal Atomic # 9 Polarization: -11.40 SS G_CDS: 1.55 Total: -9.85 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.67 Total: 44.64 kcal Atomic # 16 Polarization: 7.18 SS G_CDS: -1.30 Total: 5.88 kcal Total: -66.41 6.38 -60.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873504915.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.669 kcal (2) G-P(sol) polarization free energy of solvation -66.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds