Wall clock time and date at job start Mon Mar 30 2020 02:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47280 * 2 1 4 4 C 1.50697 * 109.47678 * 240.00045 * 2 1 3 5 5 H 1.07998 * 120.00114 * 240.00364 * 4 2 1 6 6 C 1.37874 * 120.00159 * 59.99413 * 4 2 1 7 7 N 1.31519 * 120.00078 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00336 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46718 * 60.00419 * 8 6 4 10 10 H 1.48494 * 109.47302 * 180.02562 * 8 6 4 11 11 H 1.48492 * 109.46998 * 300.00660 * 8 6 4 12 12 O 1.45200 * 109.46990 * 119.99636 * 2 1 3 13 13 C 1.34793 * 117.00249 * 270.00007 * 12 2 1 14 14 O 1.21561 * 119.99982 * 0.02562 * 13 12 2 15 15 C 1.47033 * 120.00167 * 179.97438 * 13 12 2 16 16 C 1.36103 * 123.47568 * 354.30903 * 15 13 12 17 17 S 1.70452 * 110.80876 * 180.02562 * 16 15 13 18 18 C 1.75502 * 92.45302 * 359.97438 * 17 16 15 19 19 C 1.32744 * 110.59970 * 359.71571 * 18 17 16 20 20 C 1.50699 * 123.45552 * 180.24942 * 19 18 17 21 21 F 1.39899 * 109.47160 * 124.28064 * 20 19 18 22 22 F 1.39898 * 109.46945 * 244.27912 * 20 19 18 23 23 H 1.08999 * 109.47163 * 300.00442 * 1 2 3 24 24 H 1.08999 * 109.47186 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46848 * 60.00408 * 1 2 3 26 26 H 0.96998 * 120.00174 * 180.02562 * 7 6 4 27 27 H 1.08000 * 124.59413 * 0.03867 * 16 15 13 28 28 H 1.08000 * 124.69993 * 179.97438 * 18 17 16 29 29 H 1.09003 * 109.47066 * 4.28154 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6035 8 14 2.3216 -1.1204 -4.0079 9 1 1.8261 -2.5202 -4.0076 10 1 1.8272 -0.4200 -5.2204 11 1 3.8065 -1.1209 -4.0080 12 8 2.0139 -0.6844 1.1856 13 6 2.2179 0.0672 2.2858 14 8 1.9968 1.2622 2.2550 15 6 2.7068 -0.5583 3.5233 16 6 2.8697 -1.9014 3.6720 17 16 3.4505 -2.2720 5.2311 18 6 3.4794 -0.5821 5.7041 19 6 3.0700 0.1897 4.7047 20 6 2.9867 1.6916 4.7953 21 9 3.7392 2.2634 3.7638 22 9 1.6518 2.0927 4.6761 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 -0.8901 26 1 0.7089 1.1612 -3.4845 27 1 2.6597 -2.6331 2.9059 28 1 3.7913 -0.2200 6.6726 29 1 3.3803 2.0200 5.7573 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892691764.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:17 Heat of formation + Delta-G solvation = -178.257090 kcal Electronic energy + Delta-G solvation = -19307.902778 eV Core-core repulsion = 15764.837692 eV Total energy + Delta-G solvation = -3543.065086 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 276.042 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.75761 -47.81378 -41.27217 -38.67051 -37.32078 -35.35769 -32.28458 -31.33432 -27.86673 -27.49515 -25.81820 -23.80305 -22.02817 -20.28231 -19.28386 -18.72058 -18.42645 -18.05622 -17.99703 -17.19846 -16.78171 -16.76085 -16.07112 -14.95479 -14.78951 -14.41480 -14.21835 -14.18088 -14.09444 -14.06267 -13.78093 -13.50416 -13.19412 -13.01837 -12.84512 -12.52722 -12.42304 -12.18497 -11.87144 -11.61818 -11.37319 -11.03492 -10.62828 -10.23533 -9.53278 -8.31029 -6.49111 -0.39865 0.41626 0.50523 0.68853 1.39351 1.44327 1.52394 1.95127 2.03872 2.40285 2.99303 3.01902 3.40005 3.49917 3.99290 4.04074 4.13456 4.36055 4.49239 4.51614 4.73350 4.77045 4.82346 4.97818 5.13776 5.43727 5.57129 5.86611 6.02674 6.55909 6.91996 7.22634 8.77021 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.023978 B = 0.005329 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.444524 B = 5252.642967 C = 5931.303055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.220 3.780 3 H 0.003 0.997 4 C -0.550 4.550 5 H 0.069 0.931 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.988 3.012 9 H -0.261 1.261 10 H -0.276 1.276 11 H -0.268 1.268 12 O -0.359 6.359 13 C 0.495 3.505 14 O -0.534 6.534 15 C -0.162 4.162 16 C -0.197 4.197 17 S 0.326 5.674 18 C -0.179 4.179 19 C -0.175 4.175 20 C 0.324 3.676 21 F -0.218 7.218 22 F -0.216 7.216 23 H 0.018 0.982 24 H 0.047 0.953 25 H 0.083 0.917 26 H 0.272 0.728 27 H 0.183 0.817 28 H 0.230 0.770 29 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.614 -7.063 20.165 22.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.167 3.833 3 H 0.021 0.979 4 C -0.587 4.587 5 H 0.087 0.913 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.810 3.190 9 H -0.185 1.185 10 H -0.201 1.201 11 H -0.193 1.193 12 O -0.276 6.276 13 C 0.339 3.661 14 O -0.425 6.425 15 C -0.177 4.177 16 C -0.334 4.334 17 S 0.594 5.406 18 C -0.315 4.315 19 C -0.186 4.186 20 C 0.269 3.731 21 F -0.200 7.200 22 F -0.197 7.197 23 H 0.037 0.963 24 H 0.066 0.934 25 H 0.101 0.899 26 H 0.081 0.919 27 H 0.201 0.799 28 H 0.247 0.753 29 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 6.799 -7.943 20.685 23.177 hybrid contribution -0.639 1.679 -2.281 2.903 sum 6.160 -6.265 18.404 20.394 Atomic orbital electron populations 1.21970 0.96763 1.00376 1.00654 1.20348 0.91995 0.92006 0.78982 0.97922 1.21243 1.33656 1.14013 0.89788 0.91308 1.25905 0.94636 0.95667 1.02280 1.70028 1.36503 1.23670 1.25374 0.85169 0.78747 0.78642 0.76448 1.18546 1.20105 1.19314 1.86506 1.76685 1.43191 1.21176 1.21255 0.74753 0.85218 0.84868 1.90818 1.49484 1.17202 1.85025 1.19399 1.11386 0.94045 0.92835 1.26185 1.02324 0.98504 1.06435 1.82669 1.56464 1.02514 0.98976 1.25936 1.04120 0.97689 1.03733 1.20428 1.07814 0.96503 0.93844 1.20724 0.74110 0.86944 0.91307 1.92983 1.76284 1.86156 1.64538 1.92976 1.37951 1.91667 1.97098 0.96289 0.93377 0.89889 0.91905 0.79929 0.75341 0.80493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.72 9.33 71.98 0.67 -7.05 15 2 C 0.22 12.97 2.56 29.85 0.08 13.05 15 3 H 0.00 0.20 7.16 -2.38 -0.02 0.18 15 4 C -0.55 -32.56 8.90 25.60 0.23 -32.33 15 5 H 0.07 3.94 7.81 -2.91 -0.02 3.92 15 6 C 0.01 0.84 5.30 84.65 0.45 1.29 15 7 N -0.92 -54.76 11.32 21.45 0.24 -54.51 15 8 Si 0.99 43.94 29.54 68.60 2.03 45.97 15 9 H -0.26 -11.01 7.11 99.48 0.71 -10.30 15 10 H -0.28 -11.82 7.11 99.48 0.71 -11.11 15 11 H -0.27 -11.61 7.11 99.48 0.71 -10.90 15 12 O -0.36 -18.86 9.53 -57.04 -0.54 -19.40 15 13 C 0.50 24.00 7.82 70.13 0.55 24.54 15 14 O -0.53 -29.13 12.31 19.64 0.24 -28.89 15 15 C -0.16 -5.69 5.97 -19.88 -0.12 -5.81 15 16 C -0.20 -5.13 10.56 67.32 0.71 -4.42 15 17 S 0.33 4.47 23.02 -56.49 -1.30 3.17 15 18 C -0.18 -2.62 10.85 66.65 0.72 -1.90 15 19 C -0.17 -4.68 5.45 -19.45 -0.11 -4.79 15 20 C 0.32 9.23 4.97 71.24 0.35 9.58 15 21 F -0.22 -8.31 15.62 44.97 0.70 -7.61 15 22 F -0.22 -7.88 15.98 44.97 0.72 -7.16 15 23 H 0.02 0.98 8.14 -2.39 -0.02 0.96 15 24 H 0.05 2.46 8.14 -2.39 -0.02 2.45 15 25 H 0.08 4.85 6.07 -2.39 -0.01 4.83 15 26 H 0.27 15.10 8.31 -92.71 -0.77 14.33 15 27 H 0.18 4.71 8.02 -2.91 -0.02 4.69 15 28 H 0.23 0.87 8.06 -2.91 -0.02 0.85 15 29 H 0.18 2.53 8.04 -2.39 -0.02 2.51 15 Total: -1.00 -80.69 280.12 6.82 -73.87 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: 1.19 Total: 2.40 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 3.54 Total: -7.84 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.24 Total: -54.51 kcal Atomic # 8 Polarization: -47.99 SS G_CDS: -0.30 Total: -48.29 kcal Atomic # 9 Polarization: -16.19 SS G_CDS: 1.42 Total: -14.77 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 4.47 SS G_CDS: -1.30 Total: 3.17 kcal Total: -80.69 6.82 -73.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892691764.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.384 kcal (2) G-P(sol) polarization free energy of solvation -80.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds