Wall clock time and date at job start Mon Mar 30 2020 01:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47107 * 2 1 4 4 C 1.50701 * 109.47245 * 240.00144 * 2 1 3 5 5 H 1.07997 * 120.00069 * 275.01464 * 4 2 1 6 6 C 1.37881 * 119.99837 * 95.01258 * 4 2 1 7 7 N 1.31513 * 119.99938 * 184.91628 * 6 4 2 8 8 Si 1.86803 * 120.00000 * 4.91902 * 6 4 2 9 9 H 1.48498 * 109.47244 * 84.83240 * 8 6 4 10 10 H 1.48498 * 109.46987 * 204.83339 * 8 6 4 11 11 H 1.48505 * 109.47133 * 324.83033 * 8 6 4 12 12 C 1.50700 * 109.47012 * 120.00163 * 2 1 3 13 13 N 1.31127 * 126.55212 * 239.99707 * 12 2 1 14 14 C 1.34491 * 105.61817 * 180.02562 * 13 12 2 15 15 C 1.50700 * 126.28832 * 179.97438 * 14 13 12 16 16 H 1.08997 * 115.56152 * 25.69640 * 15 14 13 17 17 C 1.53003 * 117.50020 * 240.00267 * 15 14 13 18 18 C 1.53010 * 60.03241 * 252.52597 * 17 15 14 19 19 Cl 1.80297 * 117.49837 * 107.48039 * 18 17 15 20 20 Cl 1.80299 * 117.49473 * 252.50099 * 18 17 15 21 21 N 1.29951 * 107.42389 * 0.24666 * 14 13 12 22 22 O 1.21304 * 110.24559 * 359.57630 * 21 14 13 23 23 H 1.09002 * 109.47287 * 175.01836 * 1 2 3 24 24 H 1.09003 * 109.47394 * 295.02292 * 1 2 3 25 25 H 1.09003 * 109.47404 * 55.02282 * 1 2 3 26 26 H 0.97004 * 119.99956 * 180.02562 * 7 6 4 27 27 H 1.09001 * 117.50074 * 145.02600 * 17 15 14 28 28 H 1.08997 * 117.49607 * 0.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1352 -1.7854 -1.2292 6 6 2.3605 0.0122 -2.3580 7 7 2.7062 -0.6129 -3.4621 8 14 2.3141 1.8792 -2.3171 9 1 3.5997 2.3947 -1.7817 10 1 2.1066 2.3994 -3.6924 11 1 1.1991 2.3278 -1.4447 12 6 2.0322 -0.7104 1.2304 13 7 2.7892 -0.2008 2.1722 14 6 2.9818 -1.1936 3.0588 15 6 3.7894 -1.1113 4.3284 16 1 3.8846 -0.1156 4.7615 17 6 4.9809 -2.0605 4.4706 18 6 3.7125 -2.2976 5.2929 19 17 2.6630 -3.6861 4.8227 20 17 3.7867 -1.9413 7.0588 21 7 2.3484 -2.2386 2.6165 22 8 1.7920 -1.9804 1.5700 23 1 -0.3634 -1.0238 -0.0892 24 1 -0.3634 0.4347 0.9312 25 1 -0.3634 0.5891 -0.8421 26 1 2.9374 -0.1045 -4.2553 27 1 5.8601 -1.6893 4.9973 28 1 5.1809 -2.7442 3.6456 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896814936.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:23 Heat of formation + Delta-G solvation = 80.875036 kcal Electronic energy + Delta-G solvation = -16773.506234 eV Core-core repulsion = 13687.890591 eV Total energy + Delta-G solvation = -3085.615643 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.017 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.90897 -38.33019 -36.21560 -35.83209 -35.30567 -34.19007 -32.06223 -30.22465 -25.51968 -25.09510 -23.65066 -22.52984 -21.85679 -19.56549 -17.61033 -17.45767 -16.86512 -16.00989 -15.57652 -14.80725 -14.01701 -13.54975 -13.17014 -12.77156 -12.58537 -12.51244 -12.44041 -12.01064 -11.79548 -11.38527 -11.29452 -11.18168 -10.93959 -10.88811 -10.71300 -10.41106 -10.24341 -10.03412 -9.91242 -9.54697 -9.05842 -8.80124 -6.33348 -4.38952 0.95665 1.78100 1.97884 2.55201 3.14384 3.17555 3.23365 3.25798 3.62462 3.69546 3.95644 4.19877 4.19990 4.67060 4.99118 5.05569 5.20936 5.51664 5.74715 6.08545 6.17619 6.30954 6.47198 6.57816 6.74497 7.05561 7.30964 8.16815 8.69416 8.79560 9.23079 10.78004 Molecular weight = 276.02amu Principal moments of inertia in cm(-1) A = 0.035804 B = 0.004547 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.841273 B = 6156.490252 C = 6347.343527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.094 3.906 3 H 0.075 0.925 4 C -0.525 4.525 5 H 0.084 0.916 6 C 0.083 3.917 7 N -0.880 5.880 8 Si 0.872 3.128 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.259 1.259 12 C 0.248 3.752 13 N -0.508 5.508 14 C 0.169 3.831 15 C -0.025 4.025 16 H 0.153 0.847 17 C -0.124 4.124 18 C 0.007 3.993 19 Cl -0.058 7.058 20 Cl -0.093 7.093 21 N -0.377 5.377 22 O 0.078 5.922 23 H 0.059 0.941 24 H 0.030 0.970 25 H 0.064 0.936 26 H 0.270 0.730 27 H 0.132 0.868 28 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.057 -0.621 15.839 15.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.073 3.927 3 H 0.093 0.907 4 C -0.563 4.563 5 H 0.102 0.898 6 C -0.122 4.122 7 N -0.516 5.516 8 Si 0.698 3.302 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.184 1.184 12 C 0.030 3.970 13 N -0.241 5.241 14 C -0.103 4.103 15 C -0.046 4.046 16 H 0.170 0.830 17 C -0.163 4.163 18 C -0.045 4.045 19 Cl -0.031 7.031 20 Cl -0.066 7.066 21 N -0.087 5.087 22 O 0.020 5.980 23 H 0.078 0.922 24 H 0.049 0.951 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.150 0.850 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.258 -1.137 16.350 16.545 hybrid contribution -0.025 0.925 -0.113 0.933 sum 2.233 -0.212 16.237 16.392 Atomic orbital electron populations 1.22063 0.95827 1.02183 0.99882 1.18168 0.93794 0.95417 0.85359 0.90702 1.20726 1.45973 0.95862 0.93752 0.89787 1.24982 0.93466 0.98725 0.95005 1.69864 1.43634 1.36378 1.01690 0.86914 0.79756 0.85603 0.77909 1.19496 1.20837 1.18392 1.29916 0.89934 0.81286 0.95900 1.71849 1.19350 1.29338 1.03591 1.24198 1.01224 0.86966 0.97942 1.20790 0.97615 0.96815 0.89353 0.82981 1.24077 0.91621 1.00191 1.00434 1.26715 1.01548 0.93941 0.82334 1.98793 1.68708 1.45149 1.90437 1.98745 1.98320 1.94509 1.15040 1.74877 1.12659 1.22909 0.98297 1.85305 1.53837 1.30350 1.28474 0.92165 0.95054 0.91697 0.91944 0.85027 0.85649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.16 37.15 0.34 -2.36 15 2 C 0.09 2.07 2.43 -92.93 -0.23 1.84 15 3 H 0.08 1.65 5.29 -51.93 -0.27 1.38 15 4 C -0.53 -13.64 8.84 -34.44 -0.30 -13.94 15 5 H 0.08 2.40 8.06 -52.49 -0.42 1.98 15 6 C 0.08 2.21 5.47 -17.82 -0.10 2.12 15 7 N -0.88 -25.00 13.96 55.43 0.77 -24.22 15 8 Si 0.87 19.59 26.99 -169.99 -4.59 15.00 15 9 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 11 H -0.26 -5.43 6.82 56.52 0.39 -5.04 15 12 C 0.25 5.31 7.00 -13.06 -0.09 5.21 15 13 N -0.51 -10.38 11.55 -9.87 -0.11 -10.49 15 14 C 0.17 3.05 7.67 -156.37 -1.20 1.85 15 15 C -0.03 -0.34 6.18 -91.73 -0.57 -0.90 15 16 H 0.15 1.73 8.14 -51.93 -0.42 1.31 15 17 C -0.12 -1.33 9.91 -26.72 -0.26 -1.60 15 18 C 0.01 0.09 3.62 -26.68 -0.10 -0.01 15 19 Cl -0.06 -0.84 26.34 -51.86 -1.37 -2.20 15 20 Cl -0.09 -1.01 29.29 -51.86 -1.52 -2.53 15 21 N -0.38 -7.30 9.28 30.90 0.29 -7.01 15 22 O 0.08 1.64 11.31 18.11 0.20 1.84 15 23 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 24 H 0.03 0.53 8.14 -51.93 -0.42 0.10 15 25 H 0.06 1.21 8.14 -51.93 -0.42 0.79 15 26 H 0.27 7.16 8.31 -40.82 -0.34 6.82 15 27 H 0.13 1.00 8.14 -51.93 -0.42 0.58 15 28 H 0.13 1.43 8.14 -51.93 -0.42 1.01 15 LS Contribution 280.54 15.07 4.23 4.23 Total: -1.00 -28.12 280.54 -6.99 -35.11 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: -2.39 Total: -1.93 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -2.51 Total: -7.79 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: 0.95 Total: -41.73 kcal Atomic # 8 Polarization: 1.64 SS G_CDS: 0.20 Total: 1.84 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.59 Total: 15.00 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -2.88 Total: -4.73 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.12 -6.99 -35.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896814936.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.985 kcal (2) G-P(sol) polarization free energy of solvation -28.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds