Wall clock time and date at job start Mon Mar 30 2020 01:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47107 * 2 1 4 4 C 1.50701 * 109.47245 * 240.00144 * 2 1 3 5 5 H 1.07997 * 120.00069 * 275.01464 * 4 2 1 6 6 C 1.37881 * 119.99837 * 95.01258 * 4 2 1 7 7 N 1.31513 * 119.99938 * 184.91628 * 6 4 2 8 8 Si 1.86803 * 120.00000 * 4.91902 * 6 4 2 9 9 H 1.48498 * 109.47244 * 84.83240 * 8 6 4 10 10 H 1.48498 * 109.46987 * 204.83339 * 8 6 4 11 11 H 1.48505 * 109.47133 * 324.83033 * 8 6 4 12 12 C 1.50700 * 109.47012 * 120.00163 * 2 1 3 13 13 N 1.31127 * 126.55212 * 239.99707 * 12 2 1 14 14 C 1.34491 * 105.61817 * 180.02562 * 13 12 2 15 15 C 1.50700 * 126.28832 * 179.97438 * 14 13 12 16 16 H 1.08997 * 115.56152 * 25.69640 * 15 14 13 17 17 C 1.53003 * 117.50020 * 240.00267 * 15 14 13 18 18 C 1.53010 * 60.03241 * 252.52597 * 17 15 14 19 19 Cl 1.80297 * 117.49837 * 107.48039 * 18 17 15 20 20 Cl 1.80299 * 117.49473 * 252.50099 * 18 17 15 21 21 N 1.29951 * 107.42389 * 0.24666 * 14 13 12 22 22 O 1.21304 * 110.24559 * 359.57630 * 21 14 13 23 23 H 1.09002 * 109.47287 * 175.01836 * 1 2 3 24 24 H 1.09003 * 109.47394 * 295.02292 * 1 2 3 25 25 H 1.09003 * 109.47404 * 55.02282 * 1 2 3 26 26 H 0.97004 * 119.99956 * 180.02562 * 7 6 4 27 27 H 1.09001 * 117.50074 * 145.02600 * 17 15 14 28 28 H 1.08997 * 117.49607 * 0.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1352 -1.7854 -1.2292 6 6 2.3605 0.0122 -2.3580 7 7 2.7062 -0.6129 -3.4621 8 14 2.3141 1.8792 -2.3171 9 1 3.5997 2.3947 -1.7817 10 1 2.1066 2.3994 -3.6924 11 1 1.1991 2.3278 -1.4447 12 6 2.0322 -0.7104 1.2304 13 7 2.7892 -0.2008 2.1722 14 6 2.9818 -1.1936 3.0588 15 6 3.7894 -1.1113 4.3284 16 1 3.8846 -0.1156 4.7615 17 6 4.9809 -2.0605 4.4706 18 6 3.7125 -2.2976 5.2929 19 17 2.6630 -3.6861 4.8227 20 17 3.7867 -1.9413 7.0588 21 7 2.3484 -2.2386 2.6165 22 8 1.7920 -1.9804 1.5700 23 1 -0.3634 -1.0238 -0.0892 24 1 -0.3634 0.4347 0.9312 25 1 -0.3634 0.5891 -0.8421 26 1 2.9374 -0.1045 -4.2553 27 1 5.8601 -1.6893 4.9973 28 1 5.1809 -2.7442 3.6456 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896814936.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:22 Heat of formation + Delta-G solvation = 63.614518 kcal Electronic energy + Delta-G solvation = -16774.254706 eV Core-core repulsion = 13687.890591 eV Total energy + Delta-G solvation = -3086.364116 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.017 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -46.44865 -39.35925 -37.19677 -37.09466 -36.85043 -35.67997 -33.94289 -31.83026 -27.36264 -26.38734 -25.28400 -23.51446 -23.30038 -21.05080 -19.31033 -18.86358 -18.57399 -17.31610 -16.90117 -16.32572 -15.74732 -14.73734 -14.57375 -14.21647 -14.11402 -13.71859 -13.61305 -13.44266 -13.28238 -12.90309 -12.67440 -12.57593 -12.31860 -12.28936 -12.07951 -11.81174 -11.72885 -11.64547 -11.36386 -10.94976 -10.79537 -10.64725 -8.36329 -6.47641 -0.02716 0.25416 0.98761 1.13428 1.39978 1.42752 1.51271 2.03537 2.06155 2.31923 2.51293 2.79818 3.02040 3.20226 3.27263 3.93827 4.30037 4.42396 4.46783 4.62751 4.63721 4.70045 4.88177 4.99251 5.12258 5.40497 5.51033 6.13137 6.59110 7.18331 7.21362 8.78988 Molecular weight = 276.02amu Principal moments of inertia in cm(-1) A = 0.035804 B = 0.004547 C = 0.004410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.841273 B = 6156.490252 C = 6347.343527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.094 3.906 3 H 0.082 0.918 4 C -0.529 4.529 5 H 0.039 0.961 6 C 0.029 3.971 7 N -0.932 5.932 8 Si 0.934 3.066 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.229 1.229 12 C 0.236 3.764 13 N -0.515 5.515 14 C 0.179 3.821 15 C -0.044 4.044 16 H 0.176 0.824 17 C -0.101 4.101 18 C 0.007 3.993 19 Cl -0.084 7.084 20 Cl -0.075 7.075 21 N -0.385 5.385 22 O 0.055 5.945 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.273 0.727 27 H 0.171 0.829 28 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.486 1.202 17.922 18.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.073 3.927 3 H 0.099 0.901 4 C -0.567 4.567 5 H 0.058 0.942 6 C -0.171 4.171 7 N -0.569 5.569 8 Si 0.756 3.244 9 H -0.192 1.192 10 H -0.206 1.206 11 H -0.152 1.152 12 C 0.017 3.983 13 N -0.249 5.249 14 C -0.094 4.094 15 C -0.065 4.065 16 H 0.193 0.807 17 C -0.140 4.140 18 C -0.046 4.046 19 Cl -0.056 7.056 20 Cl -0.047 7.047 21 N -0.098 5.098 22 O 0.003 5.997 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.189 0.811 28 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.655 0.671 18.438 18.640 hybrid contribution -0.104 0.266 -0.631 0.692 sum 2.551 0.937 17.807 18.013 Atomic orbital electron populations 1.21971 0.93434 1.02441 1.01619 1.18109 0.95584 0.95092 0.83883 0.90055 1.20815 1.45934 0.94169 0.95820 0.94221 1.25845 0.92973 1.03976 0.94307 1.70005 1.45669 1.38573 1.02690 0.85927 0.80787 0.79137 0.78552 1.19247 1.20618 1.15171 1.29733 0.90592 0.81633 0.96349 1.71845 1.19020 1.30107 1.03899 1.24952 1.00137 0.85713 0.98593 1.21129 0.98862 0.98651 0.87817 0.80662 1.24272 0.91846 0.98189 0.99666 1.26733 1.02067 0.92523 0.83254 1.98794 1.69669 1.46407 1.90775 1.98752 1.98245 1.94316 1.13420 1.74900 1.13432 1.23453 0.98020 1.85297 1.54667 1.30339 1.29410 0.92628 0.92324 0.91014 0.91792 0.81100 0.86384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.02 9.16 71.98 0.66 -4.36 15 2 C 0.09 4.10 2.43 -12.29 -0.03 4.07 15 3 H 0.08 3.42 5.29 -2.38 -0.01 3.41 15 4 C -0.53 -28.16 8.84 25.60 0.23 -27.93 15 5 H 0.04 2.40 8.06 -2.91 -0.02 2.37 15 6 C 0.03 1.58 5.47 84.66 0.46 2.04 15 7 N -0.93 -54.50 13.96 21.45 0.30 -54.20 15 8 Si 0.93 39.59 26.99 68.60 1.85 41.44 15 9 H -0.27 -11.20 7.11 99.48 0.71 -10.49 15 10 H -0.28 -11.74 7.11 99.48 0.71 -11.03 15 11 H -0.23 -8.52 6.82 99.48 0.68 -7.84 15 12 C 0.24 10.02 7.00 88.38 0.62 10.64 15 13 N -0.51 -20.37 11.55 -303.21 -3.50 -23.88 15 14 C 0.18 6.22 7.67 138.46 1.06 7.28 15 15 C -0.04 -1.06 6.18 -11.51 -0.07 -1.14 15 16 H 0.18 3.37 8.14 -2.39 -0.02 3.36 15 17 C -0.10 -1.86 9.91 30.60 0.30 -1.56 15 18 C 0.01 0.15 3.62 30.62 0.11 0.26 15 19 Cl -0.08 -2.33 26.34 -2.72 -0.07 -2.40 15 20 Cl -0.07 -1.41 29.29 -2.72 -0.08 -1.49 15 21 N -0.38 -14.79 9.28 -60.32 -0.56 -15.35 15 22 O 0.06 2.37 11.31 74.88 0.85 3.21 15 23 H 0.05 2.07 8.14 -2.39 -0.02 2.05 15 24 H 0.06 1.83 8.14 -2.39 -0.02 1.81 15 25 H 0.07 2.52 8.14 -2.39 -0.02 2.50 15 26 H 0.27 14.83 8.31 -92.71 -0.77 14.06 15 27 H 0.17 1.81 8.14 -2.39 -0.02 1.79 15 28 H 0.12 2.44 8.14 -2.39 -0.02 2.42 15 Total: -1.00 -62.24 280.54 3.30 -58.95 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: 1.17 Total: 4.40 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 3.34 Total: -10.69 kcal Atomic # 7 Polarization: -89.66 SS G_CDS: -3.76 Total: -93.42 kcal Atomic # 8 Polarization: 2.37 SS G_CDS: 0.85 Total: 3.21 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 1.85 Total: 41.44 kcal Atomic # 17 Polarization: -3.74 SS G_CDS: -0.15 Total: -3.89 kcal Total: -62.24 3.30 -58.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896814936.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.563 kcal (2) G-P(sol) polarization free energy of solvation -62.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds