Wall clock time and date at job start Mon Mar 30 2020 01:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00307 * 2 1 4 4 H 1.48501 * 109.47151 * 269.99542 * 3 2 1 5 5 H 1.48498 * 109.47184 * 29.99497 * 3 2 1 6 6 H 1.48498 * 109.47171 * 149.99470 * 3 2 1 7 7 C 1.37884 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00016 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99709 * 0.02562 * 7 2 1 10 10 S 1.81399 * 109.47147 * 179.97438 * 9 7 2 11 11 O 1.42096 * 108.57743 * 294.48670 * 10 9 7 12 12 O 1.42105 * 108.57596 * 65.51252 * 10 9 7 13 13 C 1.81393 * 101.92117 * 179.97438 * 10 9 7 14 14 C 1.50700 * 109.47286 * 180.02562 * 13 10 9 15 15 C 1.38261 * 119.96104 * 269.72429 * 14 13 10 16 16 C 1.38215 * 120.06664 * 179.76277 * 15 14 13 17 17 C 1.38415 * 120.00265 * 0.50706 * 16 15 14 18 18 F 1.35094 * 120.03470 * 179.71912 * 17 16 15 19 19 C 1.38650 * 119.92710 * 359.74796 * 17 16 15 20 20 F 1.35105 * 120.03430 * 180.02562 * 19 17 16 21 21 C 1.38210 * 119.96511 * 89.99395 * 14 13 10 22 22 H 0.97006 * 119.99966 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99845 * 9 7 2 24 24 H 1.09004 * 109.47113 * 299.99826 * 9 7 2 25 25 H 1.09000 * 109.47386 * 299.99782 * 13 10 9 26 26 H 1.09002 * 109.47608 * 60.00113 * 13 10 9 27 27 H 1.07997 * 119.96478 * 0.02562 * 15 14 13 28 28 H 1.08001 * 120.00095 * 180.25415 * 16 15 14 29 29 H 1.08001 * 120.00200 * 359.96352 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 16 2.4297 -3.8780 0.0005 11 8 3.1482 -3.8594 -1.2252 12 8 3.1482 -3.8593 1.2264 13 6 1.3241 -5.3161 0.0013 14 6 2.1443 -6.5803 0.0021 15 6 2.5153 -7.1634 -1.1954 16 6 3.2717 -8.3202 -1.1974 17 6 3.6497 -8.9020 0.0004 18 9 4.3842 -10.0358 -0.0008 19 6 3.2731 -8.3201 1.2012 20 9 3.6413 -8.8859 2.3715 21 6 2.5201 -7.1587 1.1997 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6239 -2.5567 0.8903 25 1 0.6956 -5.2908 0.8915 26 1 0.6949 -5.2913 -0.8884 27 1 2.2173 -6.7121 -2.1303 28 1 3.5643 -8.7725 -2.1334 29 1 2.2265 -6.7044 2.1345 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905265601.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:25 Heat of formation + Delta-G solvation = -144.535365 kcal Electronic energy + Delta-G solvation = -18634.610026 eV Core-core repulsion = 15093.007224 eV Total energy + Delta-G solvation = -3541.602802 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 276.042 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.58195 -48.65611 -39.28338 -36.14062 -35.18671 -33.41591 -32.80190 -30.98000 -29.18642 -27.27333 -23.65147 -23.42525 -22.01644 -18.31177 -17.98814 -17.34827 -17.27629 -16.82014 -16.45280 -15.91762 -15.35816 -15.20269 -15.06578 -14.67118 -14.56622 -14.23323 -14.00926 -13.43791 -12.65169 -12.47270 -12.33645 -12.22522 -12.16555 -11.49090 -11.45140 -11.25065 -11.19253 -10.94914 -10.71335 -10.53302 -9.87479 -9.33879 -9.18704 -8.76649 -8.64665 -6.39367 -4.49213 0.43476 0.80910 1.02946 3.16842 3.18791 3.24417 3.30724 3.56196 3.67235 4.03541 4.16987 4.23109 4.32373 4.61403 4.65964 4.84813 4.93203 4.98943 5.28604 5.38449 5.57250 5.67601 5.75520 5.81830 6.11178 6.54089 6.54668 6.59719 7.41449 7.68014 8.52811 9.18523 10.72364 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.043628 B = 0.004151 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.632210 B = 6744.261830 C = 6861.860926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.531 4.531 8 H 0.073 0.927 9 C -0.399 4.399 10 S 2.388 3.612 11 O -0.949 6.949 12 O -0.949 6.949 13 C -0.594 4.594 14 C -0.056 4.056 15 C -0.088 4.088 16 C -0.122 4.122 17 C 0.065 3.935 18 F -0.129 7.129 19 C 0.070 3.930 20 F -0.127 7.127 21 C -0.114 4.114 22 H 0.269 0.731 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.142 0.858 26 H 0.143 0.857 27 H 0.150 0.850 28 H 0.151 0.849 29 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.567 -14.464 -1.248 14.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.570 4.570 8 H 0.091 0.909 9 C -0.534 4.534 10 S 2.573 3.427 11 O -0.946 6.946 12 O -0.946 6.946 13 C -0.716 4.716 14 C -0.057 4.057 15 C -0.107 4.107 16 C -0.141 4.141 17 C 0.044 3.956 18 F -0.108 7.108 19 C 0.050 3.950 20 F -0.106 7.106 21 C -0.134 4.134 22 H 0.079 0.921 23 H 0.105 0.895 24 H 0.105 0.895 25 H 0.160 0.840 26 H 0.162 0.838 27 H 0.168 0.832 28 H 0.169 0.831 29 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.366 -14.489 -1.193 14.602 hybrid contribution -0.424 0.409 0.253 0.641 sum 0.942 -14.080 -0.940 14.143 Atomic orbital electron populations 1.69937 1.06250 1.27824 1.47733 1.24932 0.95046 0.99617 0.93480 0.86343 0.80047 0.81629 0.78802 1.19864 1.20608 1.19033 1.20359 0.93004 0.88351 1.55294 0.90918 1.27511 1.09619 1.09490 1.06821 1.09301 0.79879 0.78231 0.75326 1.93482 1.69713 1.85774 1.45640 1.93491 1.69729 1.85749 1.45648 1.29724 1.15179 1.14252 1.12458 1.18983 0.98220 0.95598 0.92886 1.21163 0.96603 0.94257 0.98643 1.21074 0.99435 0.96808 0.96794 1.17717 0.98103 0.86207 0.93553 1.91520 1.74541 1.47460 1.97281 1.17564 1.01739 0.95182 0.80488 1.91535 1.89834 1.84129 1.45059 1.21116 0.98205 0.93848 1.00226 0.92135 0.89539 0.89536 0.83983 0.83832 0.83221 0.83146 0.82748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.02 13.29 55.43 0.74 -23.28 15 2 C 0.08 2.01 5.46 -17.82 -0.10 1.92 15 3 Si 0.91 20.52 29.54 -169.99 -5.02 15.50 15 4 H -0.27 -6.06 7.11 56.52 0.40 -5.65 15 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 7 C -0.53 -14.16 9.13 -34.44 -0.31 -14.47 15 8 H 0.07 1.93 7.71 -52.49 -0.40 1.53 15 9 C -0.40 -8.85 5.56 36.01 0.20 -8.65 15 10 S 2.39 45.59 4.62 -107.50 -0.50 45.09 15 11 O -0.95 -20.49 18.10 -57.83 -1.05 -21.53 15 12 O -0.95 -20.89 18.10 -57.83 -1.05 -21.93 15 13 C -0.59 -7.75 5.93 36.01 0.21 -7.54 15 14 C -0.06 -0.75 5.14 -104.62 -0.54 -1.28 15 15 C -0.09 -1.05 9.70 -39.58 -0.38 -1.43 15 16 C -0.12 -1.35 10.02 -39.52 -0.40 -1.75 15 17 C 0.06 0.83 7.31 -39.36 -0.29 0.54 15 18 F -0.13 -1.68 17.18 2.25 0.04 -1.64 15 19 C 0.07 0.96 7.31 -39.36 -0.29 0.67 15 20 F -0.13 -1.79 17.18 2.25 0.04 -1.75 15 21 C -0.11 -1.54 9.68 -39.52 -0.38 -1.92 15 22 H 0.27 6.87 8.31 -40.82 -0.34 6.53 15 23 H 0.09 1.84 8.14 -51.92 -0.42 1.42 15 24 H 0.09 1.85 8.14 -51.92 -0.42 1.43 15 25 H 0.14 1.50 8.08 -51.92 -0.42 1.08 15 26 H 0.14 1.46 8.08 -51.92 -0.42 1.04 15 27 H 0.15 1.47 8.06 -52.49 -0.42 1.05 15 28 H 0.15 1.21 8.06 -52.49 -0.42 0.79 15 29 H 0.15 1.86 8.06 -52.49 -0.42 1.44 15 LS Contribution 287.20 15.07 4.33 4.33 Total: -1.00 -32.61 287.20 -7.23 -39.85 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -2.49 Total: -0.71 kcal Atomic # 6 Polarization: -31.64 SS G_CDS: -2.27 Total: -33.92 kcal Atomic # 7 Polarization: -24.02 SS G_CDS: 0.74 Total: -23.28 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -2.09 Total: -43.46 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.08 Total: -3.39 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 45.59 SS G_CDS: -0.50 Total: 45.09 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.61 -7.23 -39.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265601.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.687 kcal (2) G-P(sol) polarization free energy of solvation -32.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds