Wall clock time and date at job start Mon Mar 30 2020 01:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46900 * 109.46585 * 2 1 4 4 C 1.46901 * 111.00213 * 299.42678 * 3 2 1 5 5 C 1.50692 * 109.47128 * 293.97367 * 4 3 2 6 6 H 1.07997 * 120.00372 * 355.07734 * 5 4 3 7 7 C 1.37882 * 120.00223 * 175.08047 * 5 4 3 8 8 N 1.31519 * 119.99456 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00396 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.46906 * 60.00098 * 9 7 5 11 11 H 1.48500 * 109.47208 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47174 * 300.00120 * 9 7 5 13 13 C 1.46896 * 111.00135 * 63.38678 * 3 2 1 14 14 C 1.50703 * 109.47380 * 66.04242 * 13 3 2 15 15 C 1.38256 * 120.00034 * 90.00065 * 14 13 3 16 16 C 1.38214 * 119.99809 * 179.97438 * 15 14 13 17 17 C 1.38255 * 119.99949 * 0.02562 * 16 15 14 18 18 C 1.38208 * 120.00275 * 0.02562 * 17 16 15 19 19 C 1.50704 * 120.00013 * 179.97438 * 18 17 16 20 20 C 1.52992 * 109.47149 * 359.97438 * 19 18 17 21 21 C 1.53000 * 109.47277 * 120.00024 * 19 18 17 22 22 C 1.53005 * 109.46920 * 239.99785 * 19 18 17 23 23 C 1.38216 * 119.99601 * 270.27633 * 14 13 3 24 24 H 1.08996 * 109.47369 * 301.28600 * 1 2 3 25 25 H 1.09000 * 109.46751 * 61.28997 * 1 2 3 26 26 H 1.08997 * 109.47102 * 181.28341 * 1 2 3 27 27 H 1.09002 * 109.47259 * 240.00172 * 2 1 3 28 28 H 1.08997 * 109.46691 * 119.99936 * 2 1 3 29 29 H 1.08998 * 109.46515 * 53.97277 * 4 3 2 30 30 H 1.09004 * 109.46742 * 173.97055 * 4 3 2 31 31 H 0.97003 * 119.99615 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.47100 * 306.04238 * 13 3 2 33 33 H 1.09000 * 109.47278 * 186.04397 * 13 3 2 34 34 H 1.07995 * 119.99807 * 359.97438 * 15 14 13 35 35 H 1.08002 * 119.99941 * 180.02562 * 16 15 14 36 36 H 1.08008 * 119.99852 * 179.97438 * 17 16 15 37 37 H 1.08997 * 109.47717 * 60.00216 * 20 19 18 38 38 H 1.09005 * 109.47293 * 180.02562 * 20 19 18 39 39 H 1.09000 * 109.47253 * 299.99828 * 20 19 18 40 40 H 1.09004 * 109.46947 * 59.99644 * 21 19 18 41 41 H 1.08993 * 109.47301 * 179.97438 * 21 19 18 42 42 H 1.08996 * 109.46673 * 300.00043 * 21 19 18 43 43 H 1.09004 * 109.46974 * 59.99904 * 22 19 18 44 44 H 1.08995 * 109.46838 * 179.97438 * 22 19 18 45 45 H 1.08994 * 109.47118 * 300.00326 * 22 19 18 46 46 H 1.07994 * 120.00288 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5598 2.1060 -1.1945 5 6 2.1932 1.5015 -2.4209 6 1 2.9298 0.7184 -2.3181 7 6 1.8324 1.9481 -3.6745 8 7 0.9358 2.9021 -3.7998 9 14 2.6180 1.1992 -5.1948 10 1 2.3283 -0.2566 -5.2356 11 1 2.0627 1.8482 -6.4097 12 1 4.0872 1.4105 -5.1479 13 6 1.6158 2.0861 1.2261 14 6 2.3054 1.4621 2.4119 15 6 3.5376 1.9356 2.8231 16 6 4.1697 1.3636 3.9110 17 6 3.5701 0.3176 4.5877 18 6 2.3389 -0.1564 4.1760 19 6 1.6856 -1.2969 4.9133 20 6 2.5876 -1.7423 6.0660 21 6 0.3359 -0.8384 5.4692 22 6 1.4703 -2.4683 3.9529 23 6 1.7086 0.4127 3.0849 24 1 -0.3634 0.5336 0.8782 25 1 -0.3633 0.4937 -0.9013 26 1 -0.3633 -1.0274 0.0230 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.4752 2.0289 -1.2702 30 1 1.8451 3.1552 -1.1178 31 1 0.6817 3.2161 -4.6817 32 1 0.5358 2.0072 1.3509 33 1 1.8974 3.1366 1.1534 34 1 4.0061 2.7523 2.2942 35 1 5.1321 1.7337 4.2325 36 1 4.0643 -0.1296 5.4376 37 1 2.7415 -0.9080 6.7504 38 1 2.1154 -2.5675 6.5990 39 1 3.5490 -2.0691 5.6697 40 1 -0.3066 -0.5214 4.6476 41 1 -0.1368 -1.6634 6.0020 42 1 0.4893 -0.0039 6.1533 43 1 2.4319 -2.7949 3.5569 44 1 0.9982 -3.2933 4.4863 45 1 0.8279 -2.1513 3.1314 46 1 0.7483 0.0397 2.7608 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141103716.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:18 Heat of formation + Delta-G solvation = 9.155297 kcal Electronic energy + Delta-G solvation = -21898.197378 eV Core-core repulsion = 18979.953708 eV Total energy + Delta-G solvation = -2918.243671 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.88424 -37.46026 -35.94618 -32.69020 -31.32311 -30.07887 -29.18547 -27.83600 -27.30453 -26.67587 -24.51389 -23.15660 -22.66912 -21.27483 -19.53748 -18.43525 -16.61189 -16.14907 -15.43555 -14.97114 -14.89162 -14.63695 -14.31985 -14.17177 -13.87349 -13.51062 -13.18040 -12.82201 -12.59652 -12.38890 -12.08909 -11.92273 -11.77380 -11.75929 -11.64450 -11.48494 -11.25676 -11.03417 -11.03202 -10.84452 -10.76523 -10.54327 -10.39046 -10.31523 -10.01389 -9.70557 -9.19614 -8.50410 -8.40909 -8.31986 -7.12275 -6.00191 -4.00955 1.65296 1.66627 3.34941 3.38778 3.42124 3.99892 4.45738 4.57499 4.71135 4.92381 5.14793 5.19447 5.23688 5.28246 5.35187 5.40474 5.45861 5.54032 5.66521 5.67889 5.75495 5.77972 5.80338 5.80580 5.88269 5.95599 6.00263 6.09821 6.13506 6.18325 6.22673 6.24524 6.34650 6.39133 6.51593 6.73840 6.76146 6.82545 6.95294 7.04262 7.29641 7.34808 7.46808 7.84119 8.13176 8.24574 8.59299 9.07128 9.62996 11.10420 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.026539 B = 0.004110 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.804334 B = 6810.427721 C = 7132.572407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.059 3.941 3 N -0.528 5.528 4 C 0.188 3.812 5 C -0.504 4.504 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.084 3.916 14 C -0.056 4.056 15 C -0.105 4.105 16 C -0.122 4.122 17 C -0.132 4.132 18 C -0.077 4.077 19 C -0.028 4.028 20 C -0.142 4.142 21 C -0.138 4.138 22 C -0.139 4.139 23 C -0.109 4.109 24 H 0.043 0.957 25 H 0.069 0.931 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.003 0.997 30 H 0.024 0.976 31 H 0.261 0.739 32 H 0.036 0.964 33 H 0.074 0.926 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.059 0.941 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.939 -7.197 18.855 20.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.069 4.069 3 N -0.251 5.251 4 C 0.064 3.936 5 C -0.542 4.542 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.044 4.044 14 C -0.057 4.057 15 C -0.124 4.124 16 C -0.140 4.140 17 C -0.150 4.150 18 C -0.077 4.077 19 C -0.028 4.028 20 C -0.199 4.199 21 C -0.195 4.195 22 C -0.196 4.196 23 C -0.127 4.127 24 H 0.062 0.938 25 H 0.088 0.912 26 H 0.064 0.936 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.021 0.979 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.138 0.862 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.356 -7.086 18.677 20.022 hybrid contribution -0.498 -0.248 -0.985 1.131 sum 0.857 -7.333 17.692 19.171 Atomic orbital electron populations 1.22397 0.99589 1.00732 1.02028 1.21994 0.91930 0.91562 1.01419 1.62370 1.59297 1.01935 1.01511 1.19797 0.94510 0.93561 0.85775 1.21108 1.22868 1.20313 0.89941 0.92016 1.24971 0.95271 0.95260 0.99055 1.69951 1.32033 1.28416 1.23581 0.86588 0.79660 0.79257 0.82075 1.20323 1.21412 1.20196 1.21081 0.96387 0.97927 0.89003 1.19946 0.94835 0.95390 0.95524 1.21040 0.94660 1.00389 0.96270 1.21072 0.99631 0.96962 0.96350 1.21029 0.95525 0.97798 1.00647 1.19689 0.94993 0.96898 0.96075 1.19459 0.95207 0.93341 0.94769 1.21941 0.99490 1.00919 0.97523 1.21881 0.95697 1.00948 1.00967 1.21894 1.02032 0.96799 0.98902 1.20878 1.00146 0.96337 0.95368 0.93789 0.91195 0.93574 0.90347 0.92630 0.97912 0.95792 0.92946 0.94630 0.90793 0.86162 0.86639 0.86350 0.92419 0.92674 0.92321 0.92374 0.92620 0.92627 0.92446 0.92660 0.92209 0.86571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.44 9.14 37.16 0.34 -3.10 16 2 C 0.06 1.17 5.50 -3.82 -0.02 1.15 16 3 N -0.53 -11.40 4.69 -237.51 -1.11 -12.51 16 4 C 0.19 4.86 4.49 -4.98 -0.02 4.84 16 5 C -0.50 -14.12 8.41 -34.44 -0.29 -14.41 16 6 H 0.06 1.73 7.30 -52.49 -0.38 1.35 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.68 13.29 55.43 0.74 -25.95 16 9 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.08 1.54 4.93 -4.98 -0.02 1.52 16 14 C -0.06 -0.91 4.90 -104.62 -0.51 -1.42 16 15 C -0.11 -1.59 9.70 -39.58 -0.38 -1.98 16 16 C -0.12 -1.61 10.05 -39.58 -0.40 -2.00 16 17 C -0.13 -1.64 8.98 -39.59 -0.36 -2.00 16 18 C -0.08 -0.98 4.76 -104.62 -0.50 -1.48 16 19 C -0.03 -0.29 0.85 -155.66 -0.13 -0.42 16 20 C -0.14 -1.24 7.13 37.15 0.26 -0.97 16 21 C -0.14 -1.33 8.29 37.16 0.31 -1.02 16 22 C -0.14 -1.44 8.28 37.16 0.31 -1.13 16 23 C -0.11 -1.58 6.57 -39.58 -0.26 -1.84 16 24 H 0.04 0.74 5.71 -51.93 -0.30 0.44 16 25 H 0.07 1.48 6.36 -51.93 -0.33 1.15 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 1.70 6.94 -51.93 -0.36 1.34 16 28 H 0.06 1.01 5.91 -51.93 -0.31 0.70 16 29 H 0.00 0.09 6.04 -51.93 -0.31 -0.23 16 30 H 0.02 0.66 7.93 -51.93 -0.41 0.25 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.04 0.64 6.03 -51.93 -0.31 0.33 16 33 H 0.07 1.36 7.88 -51.93 -0.41 0.95 16 34 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 35 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.12 1.22 5.90 -52.48 -0.31 0.91 16 37 H 0.06 0.48 7.51 -51.93 -0.39 0.09 16 38 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.51 7.51 -51.93 -0.39 0.12 16 40 H 0.06 0.59 7.40 -51.93 -0.38 0.21 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.66 7.38 -51.93 -0.38 0.28 16 46 H 0.12 1.66 6.32 -52.49 -0.33 1.33 16 LS Contribution 351.67 15.07 5.30 5.30 Total: -1.00 -29.35 351.67 -9.70 -39.06 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -7.83 Total: 0.15 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: -1.77 Total: -22.79 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: -0.38 Total: -38.46 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.35 -9.70 -39.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141103716.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.213 kcal (2) G-P(sol) polarization free energy of solvation -29.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds