Wall clock time and date at job start Mon Mar 30 2020 01:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46900 * 109.46585 * 2 1 4 4 C 1.46901 * 111.00213 * 299.42678 * 3 2 1 5 5 C 1.50692 * 109.47128 * 293.97367 * 4 3 2 6 6 H 1.07997 * 120.00372 * 355.07734 * 5 4 3 7 7 C 1.37882 * 120.00223 * 175.08047 * 5 4 3 8 8 N 1.31519 * 119.99456 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00396 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.46906 * 60.00098 * 9 7 5 11 11 H 1.48500 * 109.47208 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47174 * 300.00120 * 9 7 5 13 13 C 1.46896 * 111.00135 * 63.38678 * 3 2 1 14 14 C 1.50703 * 109.47380 * 66.04242 * 13 3 2 15 15 C 1.38256 * 120.00034 * 90.00065 * 14 13 3 16 16 C 1.38214 * 119.99809 * 179.97438 * 15 14 13 17 17 C 1.38255 * 119.99949 * 0.02562 * 16 15 14 18 18 C 1.38208 * 120.00275 * 0.02562 * 17 16 15 19 19 C 1.50704 * 120.00013 * 179.97438 * 18 17 16 20 20 C 1.52992 * 109.47149 * 359.97438 * 19 18 17 21 21 C 1.53000 * 109.47277 * 120.00024 * 19 18 17 22 22 C 1.53005 * 109.46920 * 239.99785 * 19 18 17 23 23 C 1.38216 * 119.99601 * 270.27633 * 14 13 3 24 24 H 1.08996 * 109.47369 * 301.28600 * 1 2 3 25 25 H 1.09000 * 109.46751 * 61.28997 * 1 2 3 26 26 H 1.08997 * 109.47102 * 181.28341 * 1 2 3 27 27 H 1.09002 * 109.47259 * 240.00172 * 2 1 3 28 28 H 1.08997 * 109.46691 * 119.99936 * 2 1 3 29 29 H 1.08998 * 109.46515 * 53.97277 * 4 3 2 30 30 H 1.09004 * 109.46742 * 173.97055 * 4 3 2 31 31 H 0.97003 * 119.99615 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.47100 * 306.04238 * 13 3 2 33 33 H 1.09000 * 109.47278 * 186.04397 * 13 3 2 34 34 H 1.07995 * 119.99807 * 359.97438 * 15 14 13 35 35 H 1.08002 * 119.99941 * 180.02562 * 16 15 14 36 36 H 1.08008 * 119.99852 * 179.97438 * 17 16 15 37 37 H 1.08997 * 109.47717 * 60.00216 * 20 19 18 38 38 H 1.09005 * 109.47293 * 180.02562 * 20 19 18 39 39 H 1.09000 * 109.47253 * 299.99828 * 20 19 18 40 40 H 1.09004 * 109.46947 * 59.99644 * 21 19 18 41 41 H 1.08993 * 109.47301 * 179.97438 * 21 19 18 42 42 H 1.08996 * 109.46673 * 300.00043 * 21 19 18 43 43 H 1.09004 * 109.46974 * 59.99904 * 22 19 18 44 44 H 1.08995 * 109.46838 * 179.97438 * 22 19 18 45 45 H 1.08994 * 109.47118 * 300.00326 * 22 19 18 46 46 H 1.07994 * 120.00288 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5598 2.1060 -1.1945 5 6 2.1932 1.5015 -2.4209 6 1 2.9298 0.7184 -2.3181 7 6 1.8324 1.9481 -3.6745 8 7 0.9358 2.9021 -3.7998 9 14 2.6180 1.1992 -5.1948 10 1 2.3283 -0.2566 -5.2356 11 1 2.0627 1.8482 -6.4097 12 1 4.0872 1.4105 -5.1479 13 6 1.6158 2.0861 1.2261 14 6 2.3054 1.4621 2.4119 15 6 3.5376 1.9356 2.8231 16 6 4.1697 1.3636 3.9110 17 6 3.5701 0.3176 4.5877 18 6 2.3389 -0.1564 4.1760 19 6 1.6856 -1.2969 4.9133 20 6 2.5876 -1.7423 6.0660 21 6 0.3359 -0.8384 5.4692 22 6 1.4703 -2.4683 3.9529 23 6 1.7086 0.4127 3.0849 24 1 -0.3634 0.5336 0.8782 25 1 -0.3633 0.4937 -0.9013 26 1 -0.3633 -1.0274 0.0230 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.4752 2.0289 -1.2702 30 1 1.8451 3.1552 -1.1178 31 1 0.6817 3.2161 -4.6817 32 1 0.5358 2.0072 1.3509 33 1 1.8974 3.1366 1.1534 34 1 4.0061 2.7523 2.2942 35 1 5.1321 1.7337 4.2325 36 1 4.0643 -0.1296 5.4376 37 1 2.7415 -0.9080 6.7504 38 1 2.1154 -2.5675 6.5990 39 1 3.5490 -2.0691 5.6697 40 1 -0.3066 -0.5214 4.6476 41 1 -0.1368 -1.6634 6.0020 42 1 0.4893 -0.0039 6.1533 43 1 2.4319 -2.7949 3.5569 44 1 0.9982 -3.2933 4.4863 45 1 0.8279 -2.1513 3.1314 46 1 0.7483 0.0397 2.7608 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141103716.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:17 Heat of formation + Delta-G solvation = -5.912044 kcal Electronic energy + Delta-G solvation = -21898.850747 eV Core-core repulsion = 18979.953708 eV Total energy + Delta-G solvation = -2918.897040 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.96881 -38.93068 -37.03821 -34.77487 -32.62236 -31.37163 -30.62258 -29.12327 -28.06638 -28.01572 -26.03443 -24.99002 -23.76690 -22.52123 -21.06436 -19.50099 -18.35661 -17.60312 -16.92642 -16.71801 -16.24458 -15.87073 -15.63817 -15.15910 -15.06593 -14.75594 -14.41280 -14.24738 -13.97595 -13.55139 -13.44274 -13.11853 -13.05791 -12.94938 -12.81702 -12.67353 -12.52892 -12.51858 -12.48885 -12.43769 -12.16456 -11.86430 -11.77159 -11.58362 -11.40664 -11.29627 -11.16217 -10.59378 -9.61641 -9.44270 -8.89214 -8.18592 -6.28148 0.53640 0.58142 1.40214 1.43099 1.51005 2.40594 2.87575 3.13664 3.53430 3.71936 3.85932 3.97004 4.17703 4.19856 4.27273 4.28182 4.38406 4.43801 4.52348 4.60953 4.63783 4.73130 4.73648 4.81788 4.85871 4.94236 4.95188 4.98459 5.04656 5.07940 5.13666 5.21547 5.23728 5.25516 5.35208 5.36206 5.42290 5.47351 5.49377 5.67077 5.70050 5.81492 5.85740 6.08224 6.21669 6.38238 6.66226 6.88193 7.41086 8.91675 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.026539 B = 0.004110 C = 0.003925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.804334 B = 6810.427721 C = 7132.572407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.064 3.936 3 N -0.536 5.536 4 C 0.204 3.796 5 C -0.519 4.519 6 H 0.058 0.942 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.965 3.035 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.270 1.270 13 C 0.089 3.911 14 C -0.076 4.076 15 C -0.123 4.123 16 C -0.120 4.120 17 C -0.128 4.128 18 C -0.075 4.075 19 C -0.028 4.028 20 C -0.140 4.140 21 C -0.137 4.137 22 C -0.139 4.139 23 C -0.115 4.115 24 H 0.056 0.944 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.077 0.923 29 H -0.018 1.018 30 H -0.005 1.005 31 H 0.264 0.736 32 H 0.036 0.964 33 H 0.063 0.937 34 H 0.114 0.886 35 H 0.140 0.860 36 H 0.146 0.854 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.047 0.953 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.072 0.928 45 H 0.047 0.953 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.774 -9.207 20.655 22.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.064 4.064 3 N -0.259 5.259 4 C 0.078 3.922 5 C -0.557 4.557 6 H 0.076 0.924 7 C -0.194 4.194 8 N -0.575 5.575 9 Si 0.790 3.210 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.195 1.195 13 C -0.038 4.038 14 C -0.076 4.076 15 C -0.142 4.142 16 C -0.138 4.138 17 C -0.146 4.146 18 C -0.075 4.075 19 C -0.028 4.028 20 C -0.197 4.197 21 C -0.194 4.194 22 C -0.196 4.196 23 C -0.133 4.133 24 H 0.075 0.925 25 H 0.053 0.947 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.095 0.905 29 H -0.001 1.001 30 H 0.014 0.986 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.132 0.868 35 H 0.158 0.842 36 H 0.164 0.836 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.091 0.909 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.066 0.934 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.194 -9.105 20.499 22.537 hybrid contribution -0.755 0.373 -1.432 1.661 sum 1.439 -8.732 19.067 21.021 Atomic orbital electron populations 1.22257 0.98355 1.02174 1.00777 1.21948 0.92916 0.90296 1.01234 1.62255 1.59664 1.02714 1.01304 1.19431 0.92963 0.92360 0.87420 1.21381 1.22926 1.20314 0.91128 0.92402 1.25848 0.95669 0.95565 1.02301 1.70078 1.33285 1.29663 1.24444 0.85502 0.78803 0.78725 0.77997 1.19303 1.20784 1.19504 1.21025 0.96733 0.97401 0.88687 1.19757 0.95686 0.96830 0.95365 1.21122 0.94693 1.00901 0.97475 1.21354 1.00420 0.96735 0.95316 1.21402 0.95209 0.97048 1.00916 1.20015 0.95061 0.97132 0.95298 1.19530 0.95768 0.92333 0.95164 1.21934 0.99218 1.01669 0.96892 1.21875 0.95206 1.01597 1.00719 1.21898 1.01614 0.97349 0.98774 1.20896 1.00275 0.96074 0.96087 0.92523 0.94706 0.90855 0.92595 0.90506 1.00063 0.98643 0.92758 0.94587 0.91844 0.86834 0.84188 0.83602 0.91848 0.91217 0.92190 0.93394 0.90924 0.92648 0.93063 0.90868 0.93369 0.86638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.50 9.14 71.98 0.66 -5.84 16 2 C 0.06 2.56 5.50 86.31 0.47 3.04 16 3 N -0.54 -24.00 4.69 -905.36 -4.25 -28.25 16 4 C 0.20 11.09 4.49 85.55 0.38 11.47 16 5 C -0.52 -29.99 8.41 25.60 0.22 -29.78 16 6 H 0.06 3.32 7.30 -2.91 -0.02 3.30 16 7 C 0.00 0.23 5.46 84.66 0.46 0.70 16 8 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 9 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 13 C 0.09 3.40 4.93 85.56 0.42 3.82 16 14 C -0.08 -2.46 4.90 -19.86 -0.10 -2.56 16 15 C -0.12 -3.71 9.70 22.27 0.22 -3.49 16 16 C -0.12 -2.92 10.05 22.27 0.22 -2.70 16 17 C -0.13 -2.81 8.98 22.27 0.20 -2.61 16 18 C -0.08 -1.76 4.76 -19.86 -0.09 -1.85 16 19 C -0.03 -0.50 0.85 -52.93 -0.05 -0.55 16 20 C -0.14 -1.93 7.13 71.98 0.51 -1.42 16 21 C -0.14 -2.29 8.29 71.98 0.60 -1.69 16 22 C -0.14 -2.53 8.28 71.98 0.60 -1.93 16 23 C -0.11 -3.23 6.57 22.27 0.15 -3.08 16 24 H 0.06 1.91 5.71 -2.39 -0.01 1.90 16 25 H 0.03 1.51 6.36 -2.39 -0.02 1.50 16 26 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.06 2.47 6.94 -2.39 -0.02 2.46 16 28 H 0.08 2.75 5.91 -2.39 -0.01 2.73 16 29 H -0.02 -1.06 6.04 -2.39 -0.01 -1.07 16 30 H 0.00 -0.27 7.93 -2.38 -0.02 -0.28 16 31 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.04 1.35 6.03 -2.39 -0.01 1.34 16 33 H 0.06 2.49 7.88 -2.39 -0.02 2.47 16 34 H 0.11 3.46 8.06 -2.91 -0.02 3.44 16 35 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 36 H 0.15 2.41 5.90 -2.91 -0.02 2.39 16 37 H 0.06 0.81 7.51 -2.39 -0.02 0.79 16 38 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 39 H 0.06 0.82 7.51 -2.39 -0.02 0.80 16 40 H 0.05 0.89 7.40 -2.38 -0.02 0.88 16 41 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.05 0.98 7.38 -2.39 -0.02 0.96 16 46 H 0.12 3.20 6.32 -2.91 -0.02 3.18 16 Total: -1.00 -64.43 351.67 3.87 -60.57 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.93 Total: 15.65 kcal Atomic # 6 Polarization: -43.34 SS G_CDS: 4.87 Total: -38.47 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -3.96 Total: -84.79 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -64.43 3.87 -60.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141103716.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.655 kcal (2) G-P(sol) polarization free energy of solvation -64.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds