Wall clock time and date at job start Mon Mar 30 2020 01:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42101 * 110.54115 * 2 1 4 4 O 1.42099 * 110.54234 * 223.25471 * 2 1 3 5 5 C 1.76191 * 104.44977 * 111.62569 * 2 1 3 6 6 C 1.38397 * 120.44026 * 115.25059 * 5 2 1 7 7 C 1.38775 * 118.52529 * 180.26014 * 6 5 2 8 8 C 1.38348 * 119.32242 * 359.73328 * 7 6 5 9 9 Cl 1.73601 * 119.58403 * 179.97438 * 8 7 6 10 10 N 1.31957 * 120.83180 * 0.02562 * 8 7 6 11 11 C 1.32537 * 121.60474 * 359.97384 * 10 8 7 12 12 N 1.38835 * 119.70420 * 180.02562 * 11 10 8 13 13 C 1.36917 * 119.99875 * 0.02562 * 12 11 10 14 14 H 1.07997 * 119.99685 * 359.72575 * 13 12 11 15 15 C 1.38815 * 119.99889 * 180.02562 * 13 12 11 16 16 N 1.31558 * 119.99839 * 179.72521 * 15 13 12 17 17 Si 1.86803 * 119.99958 * 359.72115 * 15 13 12 18 18 H 1.48500 * 109.46986 * 90.00489 * 17 15 13 19 19 H 1.48496 * 109.47029 * 210.00506 * 17 15 13 20 20 H 1.48499 * 109.47352 * 330.00336 * 17 15 13 21 21 H 1.08998 * 109.47201 * 308.37453 * 1 2 3 22 22 H 1.09003 * 109.47423 * 68.37024 * 1 2 3 23 23 H 1.08997 * 109.47253 * 188.37015 * 1 2 3 24 24 H 1.08005 * 120.73623 * 359.97438 * 6 5 2 25 25 H 1.07995 * 120.33952 * 179.75087 * 7 6 5 26 26 H 0.97004 * 120.00253 * 180.02562 * 12 11 10 27 27 H 0.97000 * 120.00207 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9691 -0.9118 5 6 2.2537 -0.6288 1.5861 6 6 2.9215 -1.8355 1.7015 7 6 3.2436 -2.2959 2.9704 8 6 2.8955 -1.5386 4.0746 9 17 3.2945 -2.1085 5.6651 10 7 2.2630 -0.3890 3.9341 11 6 1.9385 0.0837 2.7391 12 7 1.2736 1.2982 2.6371 13 6 0.9565 2.0021 3.7678 14 1 1.2197 1.6105 4.7392 15 6 0.2912 3.2162 3.6658 16 7 -0.0183 3.8900 4.7525 17 14 -0.1645 3.8932 1.9854 18 1 -1.5141 3.4047 1.6044 19 1 -0.1710 5.3773 2.0349 20 1 0.8293 3.4358 0.9813 21 1 -0.3633 0.6380 0.8056 22 1 -0.3634 0.3788 -0.9553 23 1 -0.3633 -1.0167 0.1496 24 1 3.1821 -2.4083 0.8237 25 1 3.7610 -3.2357 3.0946 26 1 1.0337 1.6480 1.7647 27 1 -0.4828 4.7385 4.6813 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155534603.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:39 Heat of formation + Delta-G solvation = -48.672785 kcal Electronic energy + Delta-G solvation = -17409.148372 eV Core-core repulsion = 14319.958820 eV Total energy + Delta-G solvation = -3089.189552 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.012 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.18179 -38.47699 -37.81792 -37.05042 -37.02748 -34.34433 -33.45474 -30.94944 -30.44120 -26.84301 -24.98828 -23.46529 -20.92227 -19.92830 -19.06471 -18.40537 -17.76737 -17.21747 -16.75199 -16.48660 -16.10140 -15.74268 -15.12281 -14.71392 -14.33994 -14.16238 -14.00444 -13.94809 -13.67029 -13.21492 -13.07410 -12.93029 -12.63558 -12.33373 -12.22819 -12.13072 -12.04667 -11.85404 -11.06457 -10.78693 -10.39877 -9.38420 -8.64623 -6.07170 -0.90835 -0.22666 0.49234 0.77342 1.17600 1.24542 1.33289 1.89060 2.04313 2.40606 2.45286 2.78594 3.01116 3.19477 3.73705 3.90074 4.00234 4.24437 4.35470 4.39811 4.78796 4.84051 5.00627 5.22490 5.50921 5.83821 6.25882 6.62243 6.91379 7.27692 8.48582 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.014556 B = 0.009987 C = 0.006196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.083159 B = 2802.989602 C = 4517.998268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.649 4.649 2 S 2.504 3.496 3 O -0.982 6.982 4 O -0.953 6.953 5 C -0.822 4.822 6 C 0.087 3.913 7 C -0.273 4.273 8 C 0.265 3.735 9 Cl -0.034 7.034 10 N -0.573 5.573 11 C 0.427 3.573 12 N -0.552 5.552 13 C -0.312 4.312 14 H 0.097 0.903 15 C 0.003 3.997 16 N -0.898 5.898 17 Si 0.891 3.109 18 H -0.229 1.229 19 H -0.258 1.258 20 H -0.233 1.233 21 H 0.115 0.885 22 H 0.170 0.830 23 H 0.170 0.830 24 H 0.185 0.815 25 H 0.174 0.826 26 H 0.393 0.607 27 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.052 -10.931 -9.554 14.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.802 4.802 2 S 2.686 3.314 3 O -0.979 6.979 4 O -0.950 6.950 5 C -0.920 4.920 6 C 0.061 3.939 7 C -0.300 4.300 8 C 0.091 3.909 9 Cl -0.006 7.006 10 N -0.295 5.295 11 C 0.182 3.818 12 N -0.163 5.163 13 C -0.441 4.441 14 H 0.115 0.885 15 C -0.200 4.200 16 N -0.534 5.534 17 Si 0.710 3.290 18 H -0.152 1.152 19 H -0.182 1.182 20 H -0.156 1.156 21 H 0.134 0.866 22 H 0.188 0.812 23 H 0.188 0.812 24 H 0.202 0.798 25 H 0.192 0.808 26 H 0.233 0.767 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.172 -9.694 -9.096 13.294 hybrid contribution -0.436 0.291 0.144 0.544 sum -0.264 -9.402 -8.952 12.985 Atomic orbital electron populations 1.30275 1.21802 1.14773 1.13341 1.04722 0.79536 0.73635 0.73472 1.93565 1.79248 1.38378 1.86686 1.93490 1.78989 1.61331 1.61220 1.30207 1.30600 1.12576 1.18624 1.21285 0.84520 0.89381 0.98681 1.21585 1.13253 1.04884 0.90297 1.21884 0.91375 0.89779 0.87888 1.98371 1.91111 1.86250 1.24846 1.66283 1.20608 1.15945 1.26642 1.17205 0.90696 0.86114 0.87742 1.41532 1.50081 1.15916 1.08757 1.19418 1.34893 1.02452 0.87358 0.88493 1.25841 0.96326 0.95877 1.01976 1.69768 1.38102 1.15441 1.30060 0.86379 0.81933 0.81074 0.79662 1.15229 1.18169 1.15615 0.86588 0.81153 0.81163 0.79822 0.80835 0.76676 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -13.47 10.58 113.37 1.20 -12.27 15 2 S 2.50 75.37 5.17 -56.49 -0.29 75.08 15 3 O -0.98 -37.88 16.31 -127.65 -2.08 -39.96 15 4 O -0.95 -28.79 16.82 -127.65 -2.15 -30.94 15 5 C -0.82 -28.95 5.62 22.53 0.13 -28.83 15 6 C 0.09 2.57 9.60 22.44 0.22 2.78 15 7 C -0.27 -8.10 9.87 22.42 0.22 -7.88 15 8 C 0.27 9.84 7.27 84.70 0.62 10.46 15 9 Cl -0.03 -1.10 29.10 -2.72 -0.08 -1.18 15 10 N -0.57 -26.14 9.07 -184.10 -1.67 -27.80 15 11 C 0.43 18.77 7.38 133.08 0.98 19.75 15 12 N -0.55 -26.01 4.72 -189.22 -0.89 -26.91 15 13 C -0.31 -17.04 10.19 84.04 0.86 -16.19 15 14 H 0.10 5.97 7.31 -2.91 -0.02 5.95 15 15 C 0.00 0.18 5.50 84.87 0.47 0.65 15 16 N -0.90 -50.52 13.96 21.65 0.30 -50.21 15 17 Si 0.89 36.88 27.73 68.60 1.90 38.78 15 18 H -0.23 -8.29 7.11 99.48 0.71 -7.59 15 19 H -0.26 -10.44 7.11 99.48 0.71 -9.73 15 20 H -0.23 -9.37 6.53 99.48 0.65 -8.72 15 21 H 0.12 2.83 6.63 -2.39 -0.02 2.81 15 22 H 0.17 2.26 8.14 -2.39 -0.02 2.24 15 23 H 0.17 2.47 8.14 -2.39 -0.02 2.45 15 24 H 0.18 4.05 7.31 -2.91 -0.02 4.03 15 25 H 0.17 3.72 8.06 -2.91 -0.02 3.70 15 26 H 0.39 16.74 1.86 -92.71 -0.17 16.56 15 27 H 0.29 14.74 8.31 -92.71 -0.77 13.97 15 Total: -1.00 -69.69 265.38 0.73 -68.97 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 1.00 Total: 25.69 kcal Atomic # 6 Polarization: -36.20 SS G_CDS: 4.68 Total: -31.52 kcal Atomic # 7 Polarization: -102.66 SS G_CDS: -2.26 Total: -104.93 kcal Atomic # 8 Polarization: -66.67 SS G_CDS: -4.23 Total: -70.90 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 1.90 Total: 38.78 kcal Atomic # 16 Polarization: 75.37 SS G_CDS: -0.29 Total: 75.08 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -69.69 0.73 -68.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155534603.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.295 kcal (2) G-P(sol) polarization free energy of solvation -69.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds