Wall clock time and date at job start Mon Mar 30 2020 01:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00092 * 2 1 4 4 H 1.48499 * 109.47359 * 270.00385 * 3 2 1 5 5 H 1.48503 * 109.47162 * 30.00223 * 3 2 1 6 6 H 1.48498 * 109.47525 * 149.99801 * 3 2 1 7 7 C 1.37874 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99907 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00399 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47361 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47023 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.46916 * 179.97438 * 11 10 9 13 13 C 1.37983 * 119.99805 * 179.97438 * 12 11 10 14 14 N 1.33010 * 120.06846 * 180.02562 * 13 12 11 15 15 C 1.32224 * 119.92664 * 179.97438 * 14 13 12 16 16 Cl 1.73598 * 119.96565 * 179.97438 * 15 14 13 17 17 N 1.32444 * 120.07306 * 359.97274 * 15 14 13 18 18 C 1.32438 * 120.14273 * 0.02562 * 17 15 14 19 19 Cl 1.73596 * 119.96773 * 179.97438 * 18 17 15 20 20 N 1.32235 * 120.06956 * 359.97438 * 18 17 15 21 21 H 0.97001 * 120.00060 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47382 * 59.99383 * 9 7 2 23 23 H 1.09007 * 109.46878 * 299.99896 * 9 7 2 24 24 H 1.08996 * 109.47319 * 59.99718 * 10 9 7 25 25 H 1.09002 * 109.46739 * 299.99307 * 10 9 7 26 26 H 1.08996 * 109.47404 * 59.99647 * 11 10 9 27 27 H 1.09002 * 109.46697 * 299.99210 * 11 10 9 28 28 H 0.97002 * 119.99918 * 359.97438 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0014 11 6 5.5516 -2.6364 -0.0001 12 7 6.0400 -4.0177 -0.0009 13 6 7.3966 -4.2698 -0.0005 14 7 7.8415 -5.5232 -0.0017 15 6 9.1421 -5.7616 -0.0019 16 17 9.7239 -7.3972 -0.0027 17 7 10.0015 -4.7538 -0.0014 18 6 9.5616 -3.5046 -0.0003 19 17 10.6921 -2.1872 0.0010 20 7 8.2621 -3.2598 -0.0001 21 1 -0.4850 0.8400 0.0004 22 1 3.8746 -0.6807 0.8905 23 1 3.8752 -0.6796 -0.8895 24 1 3.6586 -3.1494 -0.8920 25 1 3.6580 -3.1513 0.8880 26 1 5.9142 -2.1237 0.8907 27 1 5.9156 -2.1216 -0.8893 28 1 5.4096 -4.7550 -0.0016 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157637837.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:26 Heat of formation + Delta-G solvation = 34.352426 kcal Electronic energy + Delta-G solvation = -15891.009956 eV Core-core repulsion = 12835.669692 eV Total energy + Delta-G solvation = -3055.340264 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.024 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.97524 -38.69746 -38.48567 -37.94371 -35.89802 -34.97914 -34.40777 -32.83539 -29.04981 -26.62691 -25.70136 -24.09487 -22.19431 -20.43563 -19.85035 -18.88831 -17.60539 -17.31160 -16.73715 -16.33699 -16.29649 -15.70918 -15.57468 -14.76128 -14.46174 -14.27200 -13.80387 -13.35898 -12.92319 -12.77316 -12.70076 -12.65569 -12.17730 -11.85719 -11.74987 -11.67503 -11.54131 -11.32457 -11.21870 -11.13625 -10.74435 -9.89816 -8.27395 -6.31788 -0.73987 -0.41270 -0.38780 0.22136 1.39740 1.39840 1.41866 1.52781 2.26357 2.38376 2.67121 2.81160 3.08747 3.96486 4.01559 4.18396 4.47424 4.75216 4.84554 4.87406 4.98524 5.03554 5.44614 5.56701 5.58929 5.68758 6.06246 6.28802 6.76983 6.78332 7.33077 8.88989 Molecular weight = 276.02amu Principal moments of inertia in cm(-1) A = 0.025392 B = 0.003535 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.450470 B = 7918.369718 C = 8995.071412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.949 3.051 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.241 1.241 7 C -0.531 4.531 8 H 0.035 0.965 9 C -0.010 4.010 10 C -0.104 4.104 11 C 0.137 3.863 12 N -0.652 5.652 13 C 0.620 3.380 14 N -0.597 5.597 15 C 0.454 3.546 16 Cl 0.073 6.927 17 N -0.586 5.586 18 C 0.455 3.545 19 Cl 0.072 6.928 20 N -0.596 5.596 21 H 0.265 0.735 22 H 0.026 0.974 23 H 0.025 0.975 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.421 -9.850 0.023 25.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.772 3.228 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.164 1.164 7 C -0.569 4.569 8 H 0.053 0.947 9 C -0.048 4.048 10 C -0.142 4.142 11 C 0.015 3.985 12 N -0.287 5.287 13 C 0.256 3.744 14 N -0.332 5.332 15 C 0.151 3.849 16 Cl 0.101 6.899 17 N -0.319 5.319 18 C 0.152 3.848 19 Cl 0.100 6.900 20 N -0.331 5.331 21 H 0.074 0.926 22 H 0.044 0.956 23 H 0.043 0.957 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 23.240 -9.556 0.026 25.128 hybrid contribution -0.420 0.353 -0.023 0.549 sum 22.820 -9.203 0.003 24.606 Atomic orbital electron populations 1.70068 1.08378 1.28104 1.52728 1.26031 0.95599 1.03630 0.94255 0.85677 0.79702 0.78226 0.79175 1.19294 1.21449 1.16412 1.21476 0.92122 0.93119 1.50231 0.94708 1.19441 0.93806 0.94245 0.97274 1.21518 0.91781 0.98533 1.02365 1.21623 0.94267 0.79461 1.03199 1.44583 0.99909 1.11182 1.73032 1.19236 0.87996 0.82721 0.84406 1.68092 1.16416 1.22243 1.26409 1.23120 0.84364 0.90650 0.86794 1.98480 1.86901 1.09270 1.95210 1.68123 1.40121 0.98532 1.25168 1.23130 0.86934 0.88119 0.86644 1.98483 1.55740 1.40630 1.95183 1.68135 1.02548 1.36246 1.26165 0.92608 0.95562 0.95697 0.91702 0.91724 0.90551 0.90484 0.72859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.57 13.96 21.45 0.30 -58.27 15 2 C 0.00 0.09 5.47 84.65 0.46 0.55 15 3 Si 0.95 42.62 27.47 68.60 1.88 44.51 15 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 15 5 H -0.29 -12.92 7.11 99.48 0.71 -12.21 15 6 H -0.24 -9.83 6.54 99.48 0.65 -9.18 15 7 C -0.53 -29.08 9.66 25.60 0.25 -28.83 15 8 H 0.03 2.09 7.99 -2.91 -0.02 2.07 15 9 C -0.01 -0.41 4.04 29.85 0.12 -0.29 15 10 C -0.10 -3.38 5.27 30.60 0.16 -3.21 15 11 C 0.14 3.62 5.69 86.38 0.49 4.11 15 12 N -0.65 -15.51 5.69 -350.60 -1.99 -17.50 15 13 C 0.62 16.07 8.48 261.23 2.21 18.29 15 14 N -0.60 -15.00 10.52 -193.12 -2.03 -17.03 15 15 C 0.45 10.71 8.25 180.56 1.49 12.20 15 16 Cl 0.07 1.32 29.30 -2.72 -0.08 1.24 15 17 N -0.59 -14.24 10.48 -185.77 -1.95 -16.19 15 18 C 0.46 11.13 8.25 180.56 1.49 12.62 15 19 Cl 0.07 1.40 29.30 -2.72 -0.08 1.32 15 20 N -0.60 -15.77 9.71 -193.12 -1.87 -17.64 15 21 H 0.27 15.27 8.31 -92.71 -0.77 14.50 15 22 H 0.03 1.08 7.20 -2.39 -0.02 1.06 15 23 H 0.02 1.01 7.57 -2.38 -0.02 0.99 15 24 H 0.06 2.10 8.14 -2.39 -0.02 2.08 15 25 H 0.06 2.09 8.14 -2.39 -0.02 2.07 15 26 H 0.08 2.03 8.14 -2.39 -0.02 2.01 15 27 H 0.08 2.03 8.14 -2.39 -0.02 2.01 15 28 H 0.43 8.91 8.59 -92.71 -0.80 8.11 15 Total: -1.00 -62.72 284.52 1.22 -61.51 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: 0.36 Total: 2.62 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 6.68 Total: 15.43 kcal Atomic # 7 Polarization: -119.08 SS G_CDS: -7.55 Total: -126.62 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.88 Total: 44.51 kcal Atomic # 17 Polarization: 2.71 SS G_CDS: -0.16 Total: 2.56 kcal Total: -62.72 1.22 -61.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157637837.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.860 kcal (2) G-P(sol) polarization free energy of solvation -62.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds