Wall clock time and date at job start Mon Mar 30 2020 02:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29320 * 1 3 3 Si 1.86800 * 120.00013 * 2 1 4 4 H 1.48498 * 109.46802 * 90.00376 * 3 2 1 5 5 H 1.48497 * 109.46939 * 209.99980 * 3 2 1 6 6 H 1.48497 * 109.47120 * 330.00236 * 3 2 1 7 7 C 1.46804 * 119.99595 * 179.72966 * 2 1 3 8 8 H 1.08006 * 119.99680 * 179.97438 * 7 2 1 9 9 N 1.32643 * 120.00346 * 359.97438 * 7 2 1 10 10 C 1.39252 * 119.99956 * 174.40668 * 9 7 2 11 11 C 1.39118 * 120.09148 * 186.39815 * 10 9 7 12 12 C 1.38018 * 119.91136 * 180.02562 * 11 10 9 13 13 N 1.48013 * 119.95652 * 180.02562 * 12 11 10 14 14 O 1.31698 * 119.99951 * 359.97438 * 13 12 11 15 15 O 1.31705 * 120.00016 * 180.02562 * 13 12 11 16 16 C 1.38362 * 120.09281 * 0.02688 * 12 11 10 17 17 C 1.38321 * 120.17884 * 359.97438 * 16 12 11 18 18 C 1.50695 * 119.95213 * 179.97438 * 17 16 12 19 19 F 1.39902 * 109.47343 * 0.02562 * 18 17 16 20 20 F 1.39903 * 109.46833 * 120.00500 * 18 17 16 21 21 F 1.39895 * 109.47653 * 240.00183 * 18 17 16 22 22 C 1.38072 * 120.09124 * 359.72745 * 17 16 12 23 23 H 0.97006 * 120.00651 * 179.97438 * 1 2 3 24 24 H 0.96996 * 119.99590 * 354.40493 * 9 7 2 25 25 H 1.08001 * 120.04239 * 359.97438 * 11 10 9 26 26 H 1.07997 * 119.91495 * 179.97438 * 16 12 11 27 27 H 1.07995 * 120.04213 * 180.27731 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2932 0.0000 0.0000 3 14 2.2272 1.6177 0.0000 4 1 2.4747 2.0463 1.4001 5 1 3.5247 1.4401 -0.7000 6 1 1.4246 2.6527 -0.7000 7 6 2.0271 -1.2714 0.0060 8 1 3.1072 -1.2714 0.0056 9 7 1.3639 -2.4201 0.0119 10 6 2.0551 -3.6237 -0.0999 11 6 1.3566 -4.8200 -0.2278 12 6 2.0454 -6.0109 -0.3379 13 7 1.3032 -7.2842 -0.4746 14 8 -0.0137 -7.2803 -0.4906 15 8 1.9597 -8.4211 -0.5792 16 6 3.4289 -6.0162 -0.3206 17 6 4.1273 -4.8291 -0.1936 18 6 5.6341 -4.8409 -0.1748 19 9 6.0918 -6.1570 -0.2999 20 9 6.1197 -4.0754 -1.2404 21 9 6.0898 -4.3011 1.0327 22 6 3.4459 -3.6328 -0.0892 23 1 -0.4851 -0.8400 -0.0004 24 1 0.3974 -2.4216 0.0942 25 1 0.2766 -4.8168 -0.2401 26 1 3.9651 -6.9498 -0.4066 27 1 3.9920 -2.7059 0.0055 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163183348.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:00 Heat of formation + Delta-G solvation = -100.923941 kcal Electronic energy + Delta-G solvation = -20890.373916 eV Core-core repulsion = 16816.741822 eV Total energy + Delta-G solvation = -4073.632094 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 276.051 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.89777 -47.41152 -47.35725 -39.70724 -38.15500 -36.22364 -33.97281 -33.00487 -31.81974 -29.18610 -26.26422 -25.95256 -24.64202 -21.71127 -21.48708 -19.18619 -18.81195 -18.22175 -18.05454 -17.62129 -16.56817 -16.07058 -15.91746 -15.49208 -15.19759 -14.43725 -14.27434 -14.12415 -13.80602 -13.74707 -13.53014 -13.52714 -13.23594 -12.45602 -12.24443 -11.75357 -11.56295 -11.21865 -11.02825 -10.89306 -10.79821 -10.70272 -10.55571 -10.28451 -9.57370 -9.15115 -7.87246 -7.76511 -4.23640 -0.19511 1.40124 1.64665 1.81445 2.85840 2.88409 2.94961 3.04494 3.53907 3.67869 3.96256 4.15512 4.32415 4.44152 4.72638 5.30808 5.43166 5.48043 5.62133 5.67837 6.23519 6.27638 6.47440 6.51121 6.70936 6.92856 7.06629 7.29839 7.42309 8.36822 8.53233 9.50581 Molecular weight = 276.05amu Principal moments of inertia in cm(-1) A = 0.014712 B = 0.006636 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.767353 B = 4218.528498 C = 5942.377426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.012 3.988 3 Si 1.098 2.902 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.401 4.401 8 H 0.119 0.881 9 N -0.491 5.491 10 C 0.142 3.858 11 C -0.138 4.138 12 C 0.068 3.932 13 N -0.007 5.007 14 O -0.198 6.198 15 O -0.189 6.189 16 C -0.203 4.203 17 C -0.101 4.101 18 C 0.513 3.487 19 F -0.178 7.178 20 F -0.178 7.178 21 F -0.178 7.178 22 C -0.150 4.150 23 H 0.281 0.719 24 H 0.388 0.612 25 H 0.136 0.864 26 H 0.140 0.860 27 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.065 -0.671 0.268 6.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.206 4.206 3 Si 0.919 3.081 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.533 4.533 8 H 0.136 0.864 9 N -0.082 5.082 10 C 0.015 3.985 11 C -0.164 4.164 12 C -0.020 4.020 13 N 0.468 4.532 14 O -0.387 6.387 15 O -0.381 6.381 16 C -0.229 4.229 17 C -0.104 4.104 18 C 0.459 3.541 19 F -0.160 7.160 20 F -0.159 7.159 21 F -0.159 7.159 22 C -0.175 4.175 23 H 0.095 0.905 24 H 0.223 0.777 25 H 0.154 0.846 26 H 0.158 0.842 27 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.100 1.884 0.338 6.393 hybrid contribution -0.385 -2.166 0.022 2.200 sum 5.715 -0.282 0.360 5.733 Atomic orbital electron populations 1.70031 1.08104 1.32041 1.33048 1.28785 0.95459 1.03451 0.92920 0.83054 0.74983 0.71571 0.78488 1.19748 1.19498 1.19572 1.22034 0.95640 0.84199 1.51405 0.86393 1.39848 1.08401 1.03384 1.56613 1.16744 0.90794 0.84823 1.06119 1.20069 1.00166 0.89372 1.06744 1.19443 0.90790 0.80075 1.11696 1.50551 1.02853 1.04477 0.95368 1.96217 0.89584 1.95938 1.57000 1.96215 1.68912 1.17125 1.55853 1.19497 0.90595 0.98299 1.14494 1.19094 0.89536 0.94856 1.06930 1.18249 0.88953 0.73294 0.73637 1.93152 1.90623 1.36511 1.95682 1.93202 1.89797 1.75947 1.56969 1.93197 1.90725 1.86110 1.45911 1.20104 0.92626 0.96626 1.08154 0.90496 0.77661 0.84587 0.84199 0.84690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -17.57 13.57 56.00 0.76 -16.81 15 2 C 0.01 0.24 5.70 -15.15 -0.09 0.15 15 3 Si 1.10 18.01 30.04 -169.99 -5.11 12.90 15 4 H -0.27 -4.34 7.11 56.52 0.40 -3.94 15 5 H -0.27 -4.22 7.11 56.52 0.40 -3.82 15 6 H -0.27 -4.51 7.11 56.52 0.40 -4.11 15 7 C -0.40 -8.30 9.80 -13.74 -0.13 -8.43 15 8 H 0.12 2.38 5.73 -52.48 -0.30 2.08 15 9 N -0.49 -9.68 5.28 -8.39 -0.04 -9.73 15 10 C 0.14 2.73 6.60 -83.85 -0.55 2.18 15 11 C -0.14 -2.58 9.43 -39.34 -0.37 -2.95 15 12 C 0.07 1.31 6.88 -79.98 -0.55 0.76 15 13 N -0.01 -0.14 4.98 33.94 0.17 0.03 15 14 O -0.20 -4.06 19.15 -31.57 -0.60 -4.67 15 15 O -0.19 -3.87 19.15 -31.57 -0.60 -4.48 15 16 C -0.20 -3.75 8.96 -39.51 -0.35 -4.10 15 17 C -0.10 -1.79 5.37 -104.65 -0.56 -2.35 15 18 C 0.51 8.30 3.31 36.00 0.12 8.42 15 19 F -0.18 -2.81 15.97 2.25 0.04 -2.77 15 20 F -0.18 -2.86 17.23 2.25 0.04 -2.82 15 21 F -0.18 -2.85 17.24 2.25 0.04 -2.81 15 22 C -0.15 -2.79 8.83 -39.33 -0.35 -3.14 15 23 H 0.28 5.90 6.93 -40.82 -0.28 5.61 15 24 H 0.39 7.26 6.87 -40.82 -0.28 6.98 15 25 H 0.14 2.38 7.57 -52.49 -0.40 1.98 15 26 H 0.14 2.48 6.66 -52.49 -0.35 2.13 15 27 H 0.14 2.46 5.98 -52.49 -0.31 2.14 15 LS Contribution 268.55 15.07 4.05 4.05 Total: -1.00 -22.68 268.55 -4.83 -27.51 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -0.72 Total: 9.06 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -2.84 Total: -9.47 kcal Atomic # 7 Polarization: -27.39 SS G_CDS: 0.88 Total: -26.50 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -1.21 Total: -9.14 kcal Atomic # 9 Polarization: -8.52 SS G_CDS: 0.11 Total: -8.40 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.11 Total: 12.90 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -22.68 -4.83 -27.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183348.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.415 kcal (2) G-P(sol) polarization free energy of solvation -22.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds