Wall clock time and date at job start Mon Mar 30 2020 02:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29320 * 1 3 3 Si 1.86800 * 120.00013 * 2 1 4 4 H 1.48498 * 109.46802 * 90.00376 * 3 2 1 5 5 H 1.48497 * 109.46939 * 209.99980 * 3 2 1 6 6 H 1.48497 * 109.47120 * 330.00236 * 3 2 1 7 7 C 1.46804 * 119.99595 * 179.72966 * 2 1 3 8 8 H 1.08006 * 119.99680 * 179.97438 * 7 2 1 9 9 N 1.32643 * 120.00346 * 359.97438 * 7 2 1 10 10 C 1.39252 * 119.99956 * 174.40668 * 9 7 2 11 11 C 1.39118 * 120.09148 * 186.39815 * 10 9 7 12 12 C 1.38018 * 119.91136 * 180.02562 * 11 10 9 13 13 N 1.48013 * 119.95652 * 180.02562 * 12 11 10 14 14 O 1.31698 * 119.99951 * 359.97438 * 13 12 11 15 15 O 1.31705 * 120.00016 * 180.02562 * 13 12 11 16 16 C 1.38362 * 120.09281 * 0.02688 * 12 11 10 17 17 C 1.38321 * 120.17884 * 359.97438 * 16 12 11 18 18 C 1.50695 * 119.95213 * 179.97438 * 17 16 12 19 19 F 1.39902 * 109.47343 * 0.02562 * 18 17 16 20 20 F 1.39903 * 109.46833 * 120.00500 * 18 17 16 21 21 F 1.39895 * 109.47653 * 240.00183 * 18 17 16 22 22 C 1.38072 * 120.09124 * 359.72745 * 17 16 12 23 23 H 0.97006 * 120.00651 * 179.97438 * 1 2 3 24 24 H 0.96996 * 119.99590 * 354.40493 * 9 7 2 25 25 H 1.08001 * 120.04239 * 359.97438 * 11 10 9 26 26 H 1.07997 * 119.91495 * 179.97438 * 16 12 11 27 27 H 1.07995 * 120.04213 * 180.27731 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2932 0.0000 0.0000 3 14 2.2272 1.6177 0.0000 4 1 2.4747 2.0463 1.4001 5 1 3.5247 1.4401 -0.7000 6 1 1.4246 2.6527 -0.7000 7 6 2.0271 -1.2714 0.0060 8 1 3.1072 -1.2714 0.0056 9 7 1.3639 -2.4201 0.0119 10 6 2.0551 -3.6237 -0.0999 11 6 1.3566 -4.8200 -0.2278 12 6 2.0454 -6.0109 -0.3379 13 7 1.3032 -7.2842 -0.4746 14 8 -0.0137 -7.2803 -0.4906 15 8 1.9597 -8.4211 -0.5792 16 6 3.4289 -6.0162 -0.3206 17 6 4.1273 -4.8291 -0.1936 18 6 5.6341 -4.8409 -0.1748 19 9 6.0918 -6.1570 -0.2999 20 9 6.1197 -4.0754 -1.2404 21 9 6.0898 -4.3011 1.0327 22 6 3.4459 -3.6328 -0.0892 23 1 -0.4851 -0.8400 -0.0004 24 1 0.3974 -2.4216 0.0942 25 1 0.2766 -4.8168 -0.2401 26 1 3.9651 -6.9498 -0.4066 27 1 3.9920 -2.7059 0.0055 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163183348.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:59 Heat of formation + Delta-G solvation = -110.416154 kcal Electronic energy + Delta-G solvation = -20890.785530 eV Core-core repulsion = 16816.741822 eV Total energy + Delta-G solvation = -4074.043707 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 276.051 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -51.20371 -48.70642 -48.66012 -41.26347 -39.74039 -37.73887 -35.59614 -34.52555 -33.34379 -30.72604 -27.84378 -27.36999 -26.17285 -23.16180 -23.03026 -20.70314 -20.27368 -19.52461 -19.45975 -19.14705 -18.10377 -17.54163 -17.43101 -17.10314 -16.69679 -15.82398 -15.57487 -15.44628 -15.17709 -15.09732 -14.82932 -14.82115 -14.75779 -13.96125 -13.68610 -13.20991 -13.05346 -12.69856 -12.51144 -12.41462 -12.34707 -12.10389 -11.93053 -11.91997 -11.05005 -10.67267 -9.42198 -9.30860 -5.83348 -1.80280 -0.10733 0.05767 0.26428 1.54508 1.57424 1.58756 1.79095 2.19242 2.21102 2.56673 2.70800 2.81660 3.08411 3.38626 3.79531 3.90146 3.96384 4.09041 4.12458 4.66213 4.74055 4.96634 4.98024 5.17433 5.39389 5.51889 5.67601 5.90841 6.86887 7.02266 7.98196 Molecular weight = 276.05amu Principal moments of inertia in cm(-1) A = 0.014712 B = 0.006636 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.767353 B = 4218.528498 C = 5942.377426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C -0.018 4.018 3 Si 1.137 2.863 4 H -0.265 1.265 5 H -0.257 1.257 6 H -0.277 1.277 7 C -0.425 4.425 8 H 0.120 0.880 9 N -0.504 5.504 10 C 0.147 3.853 11 C -0.138 4.138 12 C 0.056 3.944 13 N -0.007 5.007 14 O -0.208 6.208 15 O -0.188 6.188 16 C -0.188 4.188 17 C -0.101 4.101 18 C 0.522 3.478 19 F -0.173 7.173 20 F -0.175 7.175 21 F -0.174 7.174 22 C -0.148 4.148 23 H 0.276 0.724 24 H 0.390 0.610 25 H 0.146 0.854 26 H 0.152 0.848 27 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.448 -1.071 0.258 7.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.230 4.230 3 Si 0.954 3.046 4 H -0.190 1.190 5 H -0.181 1.181 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.137 0.863 9 N -0.097 5.097 10 C 0.021 3.979 11 C -0.164 4.164 12 C -0.031 4.031 13 N 0.466 4.534 14 O -0.395 6.395 15 O -0.381 6.381 16 C -0.213 4.213 17 C -0.105 4.105 18 C 0.468 3.532 19 F -0.154 7.154 20 F -0.156 7.156 21 F -0.156 7.156 22 C -0.174 4.174 23 H 0.089 0.911 24 H 0.225 0.775 25 H 0.164 0.836 26 H 0.169 0.831 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.479 1.467 0.330 7.629 hybrid contribution -0.708 -2.315 0.011 2.421 sum 6.771 -0.849 0.340 6.833 Atomic orbital electron populations 1.70102 1.08888 1.31802 1.35806 1.29848 0.95507 1.05639 0.92023 0.82601 0.74496 0.68704 0.78821 1.18969 1.18084 1.20256 1.22150 0.95828 0.84689 1.52967 0.86269 1.39818 1.08478 1.03255 1.58160 1.16965 0.91200 0.84956 1.04780 1.20170 1.00821 0.89053 1.06344 1.19605 0.91173 0.79917 1.12415 1.50657 1.02894 1.04674 0.95149 1.96222 0.89747 1.95988 1.57586 1.96209 1.68839 1.17381 1.55700 1.19750 0.90345 0.99025 1.12230 1.19223 0.90713 0.94236 1.06283 1.17927 0.87882 0.73578 0.73814 1.93171 1.90440 1.36130 1.95665 1.93215 1.89622 1.75904 1.56859 1.93212 1.90552 1.86084 1.45728 1.20305 0.92561 0.97313 1.07190 0.91112 0.77508 0.83648 0.83069 0.84099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -37.12 13.57 23.26 0.32 -36.81 15 2 C -0.02 -0.74 5.70 87.30 0.50 -0.24 15 3 Si 1.14 35.76 30.04 68.60 2.06 37.82 15 4 H -0.26 -7.93 7.11 99.48 0.71 -7.22 15 5 H -0.26 -7.41 7.11 99.48 0.71 -6.71 15 6 H -0.28 -8.92 7.11 99.48 0.71 -8.21 15 7 C -0.43 -17.51 9.80 86.81 0.85 -16.66 15 8 H 0.12 4.72 5.73 -2.91 -0.02 4.71 15 9 N -0.50 -19.78 5.28 -180.47 -0.95 -20.74 15 10 C 0.15 5.48 6.60 38.38 0.25 5.73 15 11 C -0.14 -4.99 9.43 22.43 0.21 -4.78 15 12 C 0.06 2.07 6.88 36.35 0.25 2.32 15 13 N -0.01 -0.28 4.98 -46.52 -0.23 -0.52 15 14 O -0.21 -8.26 19.15 3.52 0.07 -8.20 15 15 O -0.19 -7.31 19.15 3.51 0.07 -7.25 15 16 C -0.19 -6.44 8.96 22.32 0.20 -6.24 15 17 C -0.10 -3.34 5.37 -19.89 -0.11 -3.44 15 18 C 0.52 15.44 3.31 71.23 0.24 15.68 15 19 F -0.17 -4.92 15.97 44.97 0.72 -4.20 15 20 F -0.17 -5.15 17.23 44.97 0.77 -4.37 15 21 F -0.17 -5.11 17.24 44.97 0.78 -4.33 15 22 C -0.15 -5.25 8.83 22.43 0.20 -5.05 15 23 H 0.28 11.90 6.93 -92.70 -0.64 11.26 15 24 H 0.39 14.78 6.87 -92.71 -0.64 14.14 15 25 H 0.15 4.94 7.57 -2.91 -0.02 4.92 15 26 H 0.15 4.89 6.66 -2.91 -0.02 4.87 15 27 H 0.14 4.87 5.98 -2.91 -0.02 4.85 15 Total: -1.00 -45.61 268.55 6.95 -38.66 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.77 Total: 22.61 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 2.59 Total: -12.68 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.87 Total: -58.06 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: 0.13 Total: -15.44 kcal Atomic # 9 Polarization: -15.17 SS G_CDS: 2.27 Total: -12.90 kcal Atomic # 14 Polarization: 35.76 SS G_CDS: 2.06 Total: 37.82 kcal Total: -45.61 6.95 -38.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163183348.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.758 kcal (2) G-P(sol) polarization free energy of solvation -45.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds