Wall clock time and date at job start Mon Mar 30 2020 01:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47157 * 2 1 4 4 H 1.09004 * 109.46770 * 55.00290 * 3 2 1 5 5 C 1.53004 * 109.47479 * 295.00386 * 3 2 1 6 6 C 1.53003 * 109.47551 * 175.00069 * 3 2 1 7 7 C 1.53007 * 109.46839 * 294.67853 * 6 3 2 8 8 H 1.08994 * 109.46767 * 54.56396 * 7 6 3 9 9 C 1.52998 * 109.46712 * 174.56603 * 7 6 3 10 10 N 1.46495 * 109.46660 * 294.56005 * 7 6 3 11 11 C 1.38861 * 119.99523 * 155.00427 * 10 7 6 12 12 C 1.39587 * 119.84311 * 359.97438 * 11 10 7 13 13 C 1.36325 * 120.16174 * 180.02562 * 12 11 10 14 14 C 1.40905 * 119.83518 * 359.97438 * 13 12 11 15 15 C 1.41128 * 120.15517 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00187 * 27.87818 * 15 14 13 17 17 C 1.39868 * 120.00224 * 207.88447 * 15 14 13 18 18 N 1.30910 * 119.99419 * 11.95095 * 17 15 14 19 19 Si 1.86796 * 120.00067 * 191.95029 * 17 15 14 20 20 H 1.48493 * 109.47122 * 60.00116 * 19 17 15 21 21 H 1.48509 * 109.47031 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47275 * 299.99367 * 19 17 15 23 23 C 1.40874 * 119.68770 * 359.77378 * 14 13 12 24 24 C 1.36353 * 119.83686 * 0.47930 * 23 14 13 25 25 C 1.50696 * 119.91915 * 179.77611 * 24 23 14 26 26 H 1.09000 * 109.46982 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47042 * 299.99477 * 1 2 3 28 28 H 1.08997 * 109.47518 * 59.99944 * 1 2 3 29 29 H 1.09005 * 109.47223 * 240.00100 * 2 1 3 30 30 H 1.08997 * 109.47518 * 120.00056 * 2 1 3 31 31 H 1.09005 * 109.46664 * 306.04229 * 5 3 2 32 32 H 1.09005 * 109.46903 * 66.04247 * 5 3 2 33 33 H 1.08997 * 109.47314 * 186.04554 * 5 3 2 34 34 H 1.08998 * 109.47282 * 174.67451 * 6 3 2 35 35 H 1.09000 * 109.46808 * 54.67284 * 6 3 2 36 36 H 1.08996 * 109.47034 * 180.02562 * 9 7 6 37 37 H 1.09006 * 109.47164 * 299.99275 * 9 7 6 38 38 H 1.08995 * 109.47890 * 59.99841 * 9 7 6 39 39 H 0.97001 * 120.00725 * 335.00537 * 10 7 6 40 40 H 1.08001 * 119.91976 * 0.02562 * 12 11 10 41 41 H 1.07995 * 120.08021 * 180.02562 * 13 12 11 42 42 H 0.97004 * 119.99446 * 180.02562 * 18 17 15 43 43 H 1.08001 * 120.07689 * 180.22850 * 23 14 13 44 44 H 1.09004 * 109.47285 * 269.72099 * 25 24 23 45 45 H 1.09000 * 109.47453 * 29.72306 * 25 24 23 46 46 H 1.09000 * 109.47318 * 149.72716 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4444 0.1257 7 6 3.9647 0.8810 1.4909 8 1 3.5127 -0.1017 1.6249 9 6 5.4878 0.7564 1.5649 10 7 3.4966 1.7821 2.5470 11 6 3.2612 1.2913 3.8244 12 6 3.4711 -0.0613 4.0985 13 6 3.2415 -0.5501 5.3502 14 6 2.7918 0.3136 6.3686 15 6 2.5525 -0.1852 7.6669 16 1 3.0992 -1.0454 8.0242 17 6 1.6074 0.4344 8.4910 18 7 0.7826 1.3193 7.9905 19 14 1.5221 -0.0007 10.3056 20 1 2.8218 0.3131 10.9515 21 1 0.4435 0.7881 10.9536 22 1 1.2324 -1.4496 10.4541 23 6 2.5873 1.6785 6.0860 24 6 2.8160 2.1525 4.8281 25 6 2.5930 3.6112 4.5225 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.9787 1.5289 -2.1517 32 1 0.5500 2.2215 -1.3469 33 1 2.0884 3.1168 -1.3548 34 1 3.9360 2.4648 0.0308 35 1 3.9951 0.8265 -0.6624 36 1 5.7727 0.3547 2.5372 37 1 5.8361 0.0860 0.7791 38 1 5.9398 1.7391 1.4308 39 1 3.3512 2.7215 2.3539 40 1 3.8162 -0.7220 3.3170 41 1 3.4047 -1.5967 5.5609 42 1 0.1274 1.7493 8.5621 43 1 2.2462 2.3469 6.8628 44 1 1.5654 3.7600 4.1905 45 1 2.7739 4.2024 5.4202 46 1 3.2782 3.9265 3.7356 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168693471.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:23 Heat of formation + Delta-G solvation = -12.222355 kcal Electronic energy + Delta-G solvation = -21800.294747 eV Core-core repulsion = 18881.124072 eV Total energy + Delta-G solvation = -2919.170675 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -38.76419 -37.30661 -34.97585 -33.31270 -31.71560 -30.66946 -29.62263 -28.08606 -26.72339 -25.79097 -24.26833 -23.33232 -21.81202 -20.15811 -19.70639 -19.15321 -16.84843 -16.25597 -15.52566 -15.06230 -14.85225 -14.45678 -13.84359 -13.51257 -13.39432 -13.12507 -12.83712 -12.76517 -12.32544 -12.23135 -12.07729 -12.01535 -11.75210 -11.54328 -11.49203 -11.32707 -11.28745 -11.04611 -10.93792 -10.89318 -10.68200 -10.47632 -10.39782 -10.21124 -10.00270 -9.52295 -9.26768 -9.14368 -8.46878 -7.26064 -6.51833 -6.25396 -3.99289 2.97008 3.12612 3.17442 3.21018 3.40511 4.10840 4.37684 4.80709 4.83012 4.87964 4.97341 5.29796 5.46784 5.52629 5.56754 5.63038 5.68795 5.76057 5.80765 5.84187 5.96401 5.98483 6.01882 6.04839 6.11948 6.16251 6.19061 6.23899 6.33456 6.41658 6.46451 6.48932 6.54531 6.61359 6.63836 6.89454 7.15825 7.32785 7.39473 7.68135 7.75702 7.88755 8.22367 8.42359 8.57481 8.75790 8.87522 9.13266 9.22202 10.47601 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.023013 B = 0.004275 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.401976 B = 6548.896106 C = 6766.026910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.091 4.091 4 H 0.077 0.923 5 C -0.146 4.146 6 C -0.119 4.119 7 C 0.155 3.845 8 H 0.074 0.926 9 C -0.167 4.167 10 N -0.752 5.752 11 C 0.109 3.891 12 C -0.164 4.164 13 C -0.185 4.185 14 C 0.072 3.928 15 C -0.468 4.468 16 H 0.069 0.931 17 C 0.073 3.927 18 N -0.817 5.817 19 Si 0.904 3.096 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.269 1.269 23 C -0.113 4.113 24 C -0.143 4.143 25 C -0.091 4.091 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.383 0.617 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.274 0.726 43 H 0.120 0.880 44 H 0.049 0.951 45 H 0.052 0.948 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.171 1.911 -13.978 14.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.110 4.110 4 H 0.096 0.904 5 C -0.204 4.204 6 C -0.158 4.158 7 C 0.048 3.952 8 H 0.092 0.908 9 C -0.227 4.227 10 N -0.387 5.387 11 C 0.011 3.989 12 C -0.186 4.186 13 C -0.206 4.206 14 C 0.070 3.930 15 C -0.500 4.500 16 H 0.088 0.912 17 C -0.141 4.141 18 N -0.445 5.445 19 Si 0.729 3.271 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.194 1.194 23 C -0.133 4.133 24 C -0.146 4.146 25 C -0.148 4.148 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.217 0.783 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.085 0.915 43 H 0.138 0.862 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.015 1.888 -13.973 14.243 hybrid contribution -0.190 0.076 0.810 0.835 sum 1.825 1.964 -13.163 13.434 Atomic orbital electron populations 1.21789 0.96172 1.01301 1.01659 1.21605 0.95801 0.96456 1.01806 1.21139 0.95268 0.96485 0.98095 0.90450 1.21881 1.01108 1.00010 0.97370 1.21910 0.95685 1.01181 0.96977 1.20675 0.92922 0.94852 0.86708 0.90773 1.22313 0.97444 1.01096 1.01800 1.44049 1.77869 1.09458 1.07353 1.17147 1.04589 0.92644 0.84506 1.19864 1.08847 0.93024 0.96841 1.20597 1.09442 0.97663 0.92864 1.17458 0.91924 0.91056 0.92603 1.19309 1.19493 1.13012 0.98175 0.91236 1.25750 0.94267 0.94050 1.00019 1.69821 1.15000 1.23072 1.36589 0.86451 0.78431 0.79225 0.82947 1.19228 1.20651 1.19386 1.20873 1.02016 0.95828 0.94553 1.18879 1.07619 0.93752 0.94379 1.20450 0.99699 0.94546 1.00145 0.93141 0.92523 0.93068 0.92679 0.91339 0.93124 0.92764 0.93105 0.92097 0.91512 0.92077 0.93171 0.93179 0.78257 0.89399 0.89326 0.91484 0.86192 0.93266 0.92939 0.93977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.67 37.16 0.36 -1.42 16 2 C -0.12 -1.43 5.28 -26.73 -0.14 -1.57 16 3 C -0.09 -1.07 2.33 -90.62 -0.21 -1.28 16 4 H 0.08 1.07 7.63 -51.93 -0.40 0.67 16 5 C -0.15 -1.44 8.79 37.16 0.33 -1.12 16 6 C -0.12 -1.37 4.22 -26.73 -0.11 -1.48 16 7 C 0.16 2.20 2.14 -67.93 -0.15 2.05 16 8 H 0.07 1.15 4.55 -51.93 -0.24 0.91 16 9 C -0.17 -2.26 9.41 37.16 0.35 -1.91 16 10 N -0.75 -12.64 4.50 -52.03 -0.23 -12.87 16 11 C 0.11 2.31 6.63 -83.68 -0.55 1.76 16 12 C -0.16 -3.66 8.74 -39.77 -0.35 -4.00 16 13 C -0.19 -4.63 9.74 -39.26 -0.38 -5.01 16 14 C 0.07 1.97 5.55 -106.79 -0.59 1.38 16 15 C -0.47 -12.89 9.04 -37.88 -0.34 -13.24 16 16 H 0.07 1.85 7.87 -52.48 -0.41 1.44 16 17 C 0.07 1.91 5.23 -17.33 -0.09 1.82 16 18 N -0.82 -21.98 10.85 55.54 0.60 -21.38 16 19 Si 0.90 19.63 29.58 -169.99 -5.03 14.61 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 23 C -0.11 -2.95 8.23 -39.26 -0.32 -3.28 16 24 C -0.14 -3.26 5.86 -104.81 -0.61 -3.88 16 25 C -0.09 -1.72 9.55 36.00 0.34 -1.37 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.53 6.70 -51.93 -0.35 0.18 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.95 6.25 -51.93 -0.32 0.63 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.52 6.87 -51.93 -0.36 0.17 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.95 7.66 -51.93 -0.40 0.56 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.38 6.02 6.56 -40.82 -0.27 5.76 16 40 H 0.09 1.77 6.04 -52.49 -0.32 1.45 16 41 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 42 H 0.27 6.83 8.30 -40.82 -0.34 6.49 16 43 H 0.12 3.29 6.20 -52.49 -0.33 2.96 16 44 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 46 H 0.04 0.68 6.53 -51.93 -0.34 0.35 16 LS Contribution 355.40 15.07 5.36 5.36 Total: -1.00 -27.56 355.40 -9.71 -37.27 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -7.93 Total: 9.57 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: -2.48 Total: -32.55 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.37 Total: -34.25 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.61 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.56 -9.71 -37.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168693471.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.043 kcal (2) G-P(sol) polarization free energy of solvation -27.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds