Wall clock time and date at job start Mon Mar 30 2020 01:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47157 * 2 1 4 4 H 1.09004 * 109.46770 * 55.00290 * 3 2 1 5 5 C 1.53004 * 109.47479 * 295.00386 * 3 2 1 6 6 C 1.53003 * 109.47551 * 175.00069 * 3 2 1 7 7 C 1.53007 * 109.46839 * 294.67853 * 6 3 2 8 8 H 1.08994 * 109.46767 * 54.56396 * 7 6 3 9 9 C 1.52998 * 109.46712 * 174.56603 * 7 6 3 10 10 N 1.46495 * 109.46660 * 294.56005 * 7 6 3 11 11 C 1.38861 * 119.99523 * 155.00427 * 10 7 6 12 12 C 1.39587 * 119.84311 * 359.97438 * 11 10 7 13 13 C 1.36325 * 120.16174 * 180.02562 * 12 11 10 14 14 C 1.40905 * 119.83518 * 359.97438 * 13 12 11 15 15 C 1.41128 * 120.15517 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00187 * 27.87818 * 15 14 13 17 17 C 1.39868 * 120.00224 * 207.88447 * 15 14 13 18 18 N 1.30910 * 119.99419 * 11.95095 * 17 15 14 19 19 Si 1.86796 * 120.00067 * 191.95029 * 17 15 14 20 20 H 1.48493 * 109.47122 * 60.00116 * 19 17 15 21 21 H 1.48509 * 109.47031 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47275 * 299.99367 * 19 17 15 23 23 C 1.40874 * 119.68770 * 359.77378 * 14 13 12 24 24 C 1.36353 * 119.83686 * 0.47930 * 23 14 13 25 25 C 1.50696 * 119.91915 * 179.77611 * 24 23 14 26 26 H 1.09000 * 109.46982 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47042 * 299.99477 * 1 2 3 28 28 H 1.08997 * 109.47518 * 59.99944 * 1 2 3 29 29 H 1.09005 * 109.47223 * 240.00100 * 2 1 3 30 30 H 1.08997 * 109.47518 * 120.00056 * 2 1 3 31 31 H 1.09005 * 109.46664 * 306.04229 * 5 3 2 32 32 H 1.09005 * 109.46903 * 66.04247 * 5 3 2 33 33 H 1.08997 * 109.47314 * 186.04554 * 5 3 2 34 34 H 1.08998 * 109.47282 * 174.67451 * 6 3 2 35 35 H 1.09000 * 109.46808 * 54.67284 * 6 3 2 36 36 H 1.08996 * 109.47034 * 180.02562 * 9 7 6 37 37 H 1.09006 * 109.47164 * 299.99275 * 9 7 6 38 38 H 1.08995 * 109.47890 * 59.99841 * 9 7 6 39 39 H 0.97001 * 120.00725 * 335.00537 * 10 7 6 40 40 H 1.08001 * 119.91976 * 0.02562 * 12 11 10 41 41 H 1.07995 * 120.08021 * 180.02562 * 13 12 11 42 42 H 0.97004 * 119.99446 * 180.02562 * 18 17 15 43 43 H 1.08001 * 120.07689 * 180.22850 * 23 14 13 44 44 H 1.09004 * 109.47285 * 269.72099 * 25 24 23 45 45 H 1.09000 * 109.47453 * 29.72306 * 25 24 23 46 46 H 1.09000 * 109.47318 * 149.72716 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4444 0.1257 7 6 3.9647 0.8810 1.4909 8 1 3.5127 -0.1017 1.6249 9 6 5.4878 0.7564 1.5649 10 7 3.4966 1.7821 2.5470 11 6 3.2612 1.2913 3.8244 12 6 3.4711 -0.0613 4.0985 13 6 3.2415 -0.5501 5.3502 14 6 2.7918 0.3136 6.3686 15 6 2.5525 -0.1852 7.6669 16 1 3.0992 -1.0454 8.0242 17 6 1.6074 0.4344 8.4910 18 7 0.7826 1.3193 7.9905 19 14 1.5221 -0.0007 10.3056 20 1 2.8218 0.3131 10.9515 21 1 0.4435 0.7881 10.9536 22 1 1.2324 -1.4496 10.4541 23 6 2.5873 1.6785 6.0860 24 6 2.8160 2.1525 4.8281 25 6 2.5930 3.6112 4.5225 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.9787 1.5289 -2.1517 32 1 0.5500 2.2215 -1.3469 33 1 2.0884 3.1168 -1.3548 34 1 3.9360 2.4648 0.0308 35 1 3.9951 0.8265 -0.6624 36 1 5.7727 0.3547 2.5372 37 1 5.8361 0.0860 0.7791 38 1 5.9398 1.7391 1.4308 39 1 3.3512 2.7215 2.3539 40 1 3.8162 -0.7220 3.3170 41 1 3.4047 -1.5967 5.5609 42 1 0.1274 1.7493 8.5621 43 1 2.2462 2.3469 6.8628 44 1 1.5654 3.7600 4.1905 45 1 2.7739 4.2024 5.4202 46 1 3.2782 3.9265 3.7356 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168693471.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:22 Heat of formation + Delta-G solvation = -24.385068 kcal Electronic energy + Delta-G solvation = -21800.822162 eV Core-core repulsion = 18881.124072 eV Total energy + Delta-G solvation = -2919.698090 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.29452 -38.64723 -36.42076 -34.98726 -33.48911 -32.08367 -30.69321 -29.83282 -27.65929 -27.55542 -26.04352 -24.33159 -23.31785 -21.61329 -21.33204 -20.35694 -18.80956 -17.82848 -17.11383 -16.50617 -16.00439 -15.61451 -15.38105 -14.98705 -14.67045 -14.48041 -14.41488 -14.05540 -13.74053 -13.68368 -13.32606 -13.23973 -13.00583 -12.90041 -12.87768 -12.78874 -12.69032 -12.57654 -12.45414 -12.28910 -11.98717 -11.93661 -11.44139 -11.40373 -11.24143 -11.15828 -11.03028 -10.93906 -10.20948 -9.15359 -8.45992 -8.01941 -5.98982 1.12998 1.23917 1.39271 1.50247 1.60976 2.28913 2.88458 2.99556 3.83050 3.85233 3.94768 4.05932 4.30502 4.34836 4.43562 4.49786 4.52482 4.67344 4.71546 4.73161 4.78633 4.84887 4.87811 4.90988 4.93212 5.00800 5.04578 5.13982 5.16151 5.17194 5.24448 5.27191 5.28263 5.38916 5.40514 5.45923 5.54436 5.59585 5.63709 5.82911 5.89562 6.00579 6.26264 6.49248 6.75048 6.95112 7.13204 7.21208 7.39585 8.54760 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.023013 B = 0.004275 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.401976 B = 6548.896106 C = 6766.026910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.090 4.090 4 H 0.052 0.948 5 C -0.142 4.142 6 C -0.110 4.110 7 C 0.150 3.850 8 H 0.061 0.939 9 C -0.163 4.163 10 N -0.740 5.740 11 C 0.131 3.869 12 C -0.170 4.170 13 C -0.198 4.198 14 C 0.031 3.969 15 C -0.508 4.508 16 H 0.063 0.937 17 C 0.030 3.970 18 N -0.849 5.849 19 Si 0.976 3.024 20 H -0.264 1.264 21 H -0.270 1.270 22 H -0.264 1.264 23 C -0.132 4.132 24 C -0.158 4.158 25 C -0.084 4.084 26 H 0.052 0.948 27 H 0.034 0.966 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.034 0.966 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.392 0.608 40 H 0.111 0.889 41 H 0.089 0.911 42 H 0.279 0.721 43 H 0.099 0.901 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.816 2.572 -16.435 16.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.108 4.108 4 H 0.071 0.929 5 C -0.199 4.199 6 C -0.148 4.148 7 C 0.044 3.956 8 H 0.079 0.921 9 C -0.221 4.221 10 N -0.375 5.375 11 C 0.030 3.970 12 C -0.192 4.192 13 C -0.219 4.219 14 C 0.028 3.972 15 C -0.540 4.540 16 H 0.081 0.919 17 C -0.180 4.180 18 N -0.478 5.478 19 Si 0.798 3.202 20 H -0.188 1.188 21 H -0.195 1.195 22 H -0.189 1.189 23 C -0.153 4.153 24 C -0.162 4.162 25 C -0.141 4.141 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.053 0.947 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.228 0.772 40 H 0.129 0.871 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.117 0.883 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.675 2.560 -16.483 16.894 hybrid contribution -0.341 -0.127 1.346 1.394 sum 2.334 2.433 -15.137 15.508 Atomic orbital electron populations 1.21784 0.96246 1.01430 1.01404 1.21604 0.95789 0.96783 1.01484 1.21097 0.95384 0.95999 0.98365 0.92943 1.21830 1.01208 1.00397 0.96446 1.21855 0.95443 1.02112 0.95378 1.20893 0.93426 0.93912 0.87337 0.92059 1.22249 0.96526 1.02075 1.01297 1.44126 1.76748 1.10415 1.06182 1.17237 1.01680 0.92051 0.85985 1.20075 1.08657 0.94046 0.96423 1.20757 1.09714 0.97665 0.93724 1.17782 0.93888 0.92082 0.93423 1.19539 1.20971 1.13992 0.99505 0.91908 1.26547 0.93342 0.93774 1.04367 1.69903 1.15610 1.24141 1.38182 0.85357 0.78676 0.79111 0.77080 1.18812 1.19459 1.18884 1.20810 1.03449 0.95346 0.95647 1.19270 1.07090 0.96233 0.93612 1.20427 1.00849 0.91728 1.01124 0.92892 0.94669 0.91379 0.90825 0.93737 0.91804 0.92825 0.92328 0.90876 0.89310 0.94656 0.90605 0.92338 0.77204 0.87110 0.89300 0.91062 0.88277 0.92565 0.93007 0.91070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 9.67 71.98 0.70 -2.66 16 2 C -0.12 -2.62 5.28 30.59 0.16 -2.46 16 3 C -0.09 -1.86 2.33 -10.79 -0.03 -1.88 16 4 H 0.05 1.35 7.63 -2.38 -0.02 1.34 16 5 C -0.14 -2.29 8.79 71.98 0.63 -1.66 16 6 C -0.11 -2.10 4.22 30.60 0.13 -1.98 16 7 C 0.15 3.86 2.14 44.99 0.10 3.95 16 8 H 0.06 1.79 4.55 -2.39 -0.01 1.78 16 9 C -0.16 -3.92 9.41 71.98 0.68 -3.24 16 10 N -0.74 -23.41 4.50 -318.54 -1.43 -24.84 16 11 C 0.13 5.50 6.63 38.67 0.26 5.76 16 12 C -0.17 -7.63 8.74 22.15 0.19 -7.43 16 13 C -0.20 -10.29 9.74 22.48 0.22 -10.07 16 14 C 0.03 1.77 5.55 -21.27 -0.12 1.65 16 15 C -0.51 -29.48 9.04 23.37 0.21 -29.27 16 16 H 0.06 3.55 7.87 -2.91 -0.02 3.53 16 17 C 0.03 1.63 5.23 85.23 0.45 2.08 16 18 N -0.85 -47.58 10.85 21.82 0.24 -47.34 16 19 Si 0.98 41.46 29.58 68.60 2.03 43.49 16 20 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 21 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 22 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 23 C -0.13 -7.23 8.23 22.48 0.19 -7.05 16 24 C -0.16 -7.29 5.86 -19.99 -0.12 -7.40 16 25 C -0.08 -3.09 9.55 71.23 0.68 -2.40 16 26 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.07 1.26 6.70 -2.39 -0.02 1.25 16 29 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.04 1.19 6.25 -2.39 -0.01 1.17 16 31 H 0.06 0.88 8.14 -2.38 -0.02 0.87 16 32 H 0.05 0.88 6.87 -2.38 -0.02 0.86 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.03 1.03 7.66 -2.39 -0.02 1.01 16 37 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.39 11.22 6.56 -92.71 -0.61 10.61 16 40 H 0.11 4.39 6.04 -2.91 -0.02 4.37 16 41 H 0.09 4.44 8.06 -2.91 -0.02 4.41 16 42 H 0.28 14.34 8.30 -92.71 -0.77 13.57 16 43 H 0.10 5.74 6.20 -2.91 -0.02 5.72 16 44 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 45 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 46 H 0.07 2.14 6.53 -2.39 -0.02 2.13 16 Total: -1.00 -62.86 355.40 5.49 -57.37 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: 0.34 Total: 35.41 kcal Atomic # 6 Polarization: -68.40 SS G_CDS: 4.32 Total: -64.07 kcal Atomic # 7 Polarization: -70.99 SS G_CDS: -1.20 Total: -72.18 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -62.86 5.49 -57.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168693471.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.980 kcal (2) G-P(sol) polarization free energy of solvation -62.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds