Wall clock time and date at job start Mon Mar 30 2020 01:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46824 * 2 1 4 4 C 1.52999 * 109.47240 * 120.00076 * 2 1 3 5 5 C 1.52994 * 109.47064 * 66.11305 * 4 2 1 6 6 H 1.08998 * 109.47391 * 306.70763 * 5 4 2 7 7 C 1.53006 * 109.47063 * 186.70781 * 5 4 2 8 8 C 1.50694 * 109.46851 * 175.00152 * 7 5 4 9 9 C 1.38239 * 120.00405 * 90.00383 * 8 7 5 10 10 C 1.38234 * 120.00390 * 180.25371 * 9 8 7 11 11 C 1.38233 * 119.99731 * 359.52861 * 10 9 8 12 12 C 1.38238 * 120.00450 * 0.42378 * 11 10 9 13 13 C 1.38242 * 119.99737 * 359.81186 * 12 11 10 14 14 N 1.46902 * 109.47255 * 66.70792 * 5 4 2 15 15 C 1.46898 * 111.00285 * 218.48948 * 14 5 4 16 16 H 1.09003 * 109.46960 * 329.34006 * 15 14 5 17 17 C 1.53002 * 109.47179 * 89.33486 * 15 14 5 18 18 C 1.50694 * 109.47143 * 209.33819 * 15 14 5 19 19 H 1.07999 * 120.00365 * 359.97438 * 18 15 14 20 20 C 1.37876 * 119.99942 * 180.02562 * 18 15 14 21 21 N 1.31514 * 119.99940 * 180.02562 * 20 18 15 22 22 Si 1.86808 * 120.00133 * 359.97438 * 20 18 15 23 23 H 1.48494 * 109.47054 * 89.99696 * 22 20 18 24 24 H 1.48503 * 109.47152 * 210.00227 * 22 20 18 25 25 H 1.48497 * 109.46661 * 330.00138 * 22 20 18 26 26 H 1.08999 * 109.47694 * 59.99507 * 1 2 3 27 27 H 1.09003 * 109.47013 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47027 * 299.99725 * 1 2 3 29 29 H 1.09000 * 109.47027 * 240.00274 * 2 1 3 30 30 H 1.08999 * 109.46814 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47063 * 299.99805 * 3 2 1 32 32 H 1.09000 * 109.47094 * 60.00316 * 3 2 1 33 33 H 1.09008 * 109.46763 * 306.11373 * 4 2 1 34 34 H 1.08993 * 109.47119 * 186.11665 * 4 2 1 35 35 H 1.08994 * 109.46858 * 55.00294 * 7 5 4 36 36 H 1.08998 * 109.46895 * 294.99788 * 7 5 4 37 37 H 1.07999 * 119.99190 * 359.97438 * 9 8 7 38 38 H 1.07996 * 120.00424 * 179.72491 * 10 9 8 39 39 H 1.08006 * 120.00051 * 180.21700 * 11 10 9 40 40 H 1.08001 * 120.00490 * 179.78747 * 12 11 10 41 41 H 1.07997 * 120.00058 * 179.97438 * 13 12 11 42 42 H 1.00901 * 110.99561 * 342.44758 * 14 5 4 43 43 H 1.09002 * 109.47179 * 294.93508 * 17 15 14 44 44 H 1.08996 * 109.46695 * 54.93384 * 17 15 14 45 45 H 1.08997 * 109.47045 * 174.93383 * 17 15 14 46 46 H 0.97007 * 120.00002 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6593 -2.2012 1.1748 6 1 0.5875 -2.2923 0.9988 7 6 2.0198 -2.8875 2.4939 8 6 1.5343 -4.3139 2.4670 9 6 2.3579 -5.3155 1.9881 10 6 1.9107 -6.6232 1.9586 11 6 0.6433 -6.9306 2.4170 12 6 -0.1801 -5.9293 2.8968 13 6 0.2654 -4.6208 2.9218 14 7 2.3923 -2.8406 0.0739 15 6 1.5453 -3.8151 -0.6267 16 1 0.8301 -4.2453 0.0746 17 6 0.7911 -3.1146 -1.7587 18 6 2.4077 -4.9100 -1.1997 19 1 3.4780 -4.8843 -1.0581 20 6 1.8303 -5.9440 -1.9057 21 7 2.5829 -6.8998 -2.4054 22 14 -0.0210 -5.9882 -2.1514 23 1 -0.3717 -5.2684 -3.4019 24 1 -0.4740 -7.3991 -2.2485 25 1 -0.6889 -5.3321 -0.9987 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.5900 -0.2745 2.1359 34 1 3.1244 -0.6274 1.3056 35 1 1.5459 -2.3579 3.3203 36 1 3.1016 -2.8744 2.6265 37 1 3.3492 -5.0756 1.6329 38 1 2.5525 -7.4050 1.5804 39 1 0.2951 -7.9528 2.3972 40 1 -1.1715 -6.1690 3.2517 41 1 -0.3780 -3.8384 3.2962 42 1 2.7561 -2.1512 -0.5668 43 1 0.1005 -2.3839 -1.3376 44 1 1.5029 -2.6082 -2.4105 45 1 0.2326 -3.8527 -2.3344 46 1 2.1767 -7.6275 -2.9018 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169060983.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:25 Heat of formation + Delta-G solvation = 9.284121 kcal Electronic energy + Delta-G solvation = -22884.085895 eV Core-core repulsion = 19965.847810 eV Total energy + Delta-G solvation = -2918.238084 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.07798 -37.60965 -34.97525 -33.24750 -31.62945 -30.12697 -30.03442 -27.31082 -27.00495 -25.80185 -24.93846 -21.86091 -21.66702 -20.28433 -20.01401 -19.38437 -16.54322 -16.11415 -15.43680 -15.09172 -14.74572 -14.50133 -14.16969 -13.95368 -13.63857 -13.10888 -12.70875 -12.54510 -12.50407 -12.43666 -12.28205 -12.24020 -12.07783 -11.60254 -11.47761 -11.29657 -11.04921 -10.85658 -10.73261 -10.59897 -10.43350 -10.25135 -10.21396 -9.98527 -9.89972 -9.40319 -9.01605 -8.47854 -8.12621 -7.91530 -7.28300 -5.96636 -3.90605 2.08251 2.18674 3.29837 3.42872 3.44336 4.48744 4.50803 4.91103 4.94670 5.03060 5.10256 5.35943 5.41012 5.49537 5.64037 5.66239 5.67982 5.70544 5.76931 5.81567 5.85649 5.90011 6.02338 6.04517 6.11840 6.19849 6.24814 6.26487 6.31039 6.36684 6.42538 6.43972 6.54038 6.57781 6.68512 6.77063 6.81974 6.91495 7.13435 7.21941 7.32418 7.45027 7.77540 7.85673 8.04420 8.46344 8.80061 9.14839 9.68936 11.16862 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.014078 B = 0.008303 C = 0.006247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.491831 B = 3371.329403 C = 4480.732142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.102 4.102 3 C -0.144 4.144 4 C -0.120 4.120 5 C 0.088 3.912 6 H 0.046 0.954 7 C -0.065 4.065 8 C -0.076 4.076 9 C -0.057 4.057 10 C -0.104 4.104 11 C -0.133 4.133 12 C -0.135 4.135 13 C -0.133 4.133 14 N -0.664 5.664 15 C 0.184 3.816 16 H 0.040 0.960 17 C -0.185 4.185 18 C -0.480 4.480 19 H 0.080 0.920 20 C 0.072 3.928 21 N -0.903 5.903 22 Si 0.875 3.125 23 H -0.285 1.285 24 H -0.299 1.299 25 H -0.268 1.268 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.127 0.873 38 H 0.117 0.883 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.329 0.671 43 H 0.027 0.973 44 H 0.049 0.951 45 H 0.043 0.957 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.605 10.559 9.310 14.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.120 4.120 3 C -0.201 4.201 4 C -0.158 4.158 5 C -0.023 4.023 6 H 0.064 0.936 7 C -0.103 4.103 8 C -0.076 4.076 9 C -0.075 4.075 10 C -0.122 4.122 11 C -0.151 4.151 12 C -0.153 4.153 13 C -0.151 4.151 14 N -0.296 5.296 15 C 0.075 3.925 16 H 0.057 0.943 17 C -0.244 4.244 18 C -0.519 4.519 19 H 0.098 0.902 20 C -0.129 4.129 21 N -0.543 5.543 22 Si 0.706 3.294 23 H -0.213 1.213 24 H -0.227 1.227 25 H -0.193 1.193 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.145 0.855 38 H 0.135 0.865 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.148 0.852 43 H 0.046 0.954 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.307 9.921 9.619 14.209 hybrid contribution -1.906 0.357 -1.073 2.217 sum -5.214 10.278 8.546 14.348 Atomic orbital electron populations 1.21933 0.95647 1.02077 1.01031 1.21168 0.95764 0.95949 0.99162 1.21813 1.00897 0.96170 1.01207 1.21927 1.01375 0.95178 0.97312 1.21581 0.96742 0.91019 0.92952 0.93568 1.20627 1.01301 0.91891 0.96467 1.19712 0.93961 0.95407 0.98478 1.20991 1.00402 0.91624 0.94532 1.21110 0.95877 0.97293 0.97930 1.21004 0.94943 0.98592 1.00579 1.20876 0.99013 0.93386 1.02055 1.20850 0.95936 0.95976 1.02359 1.60656 1.37523 1.18226 1.13150 1.19761 0.91847 0.90622 0.90309 0.94266 1.22958 1.00064 0.99707 1.01641 1.20895 0.95498 1.04053 1.31433 0.90245 1.24836 0.96679 0.95710 0.95654 1.69877 1.34829 1.12278 1.37288 0.87051 0.88023 0.75766 0.78515 1.21254 1.22725 1.19323 0.93176 0.92118 0.93085 0.90786 0.92710 0.93090 0.93071 0.92054 0.91280 0.92415 0.90855 0.85507 0.86508 0.87325 0.87462 0.87525 0.85243 0.95446 0.93174 0.93856 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.83 37.16 0.33 -1.52 16 2 C -0.10 -1.25 2.82 -90.62 -0.26 -1.51 16 3 C -0.14 -1.49 9.19 37.16 0.34 -1.15 16 4 C -0.12 -1.52 4.12 -26.73 -0.11 -1.63 16 5 C 0.09 1.38 2.00 -67.71 -0.14 1.24 16 6 H 0.05 0.80 5.68 -51.93 -0.30 0.50 16 7 C -0.06 -0.99 5.03 -27.88 -0.14 -1.13 16 8 C -0.08 -1.34 3.62 -104.62 -0.38 -1.72 16 9 C -0.06 -1.13 7.36 -39.58 -0.29 -1.42 16 10 C -0.10 -2.05 10.05 -39.58 -0.40 -2.45 16 11 C -0.13 -2.42 10.05 -39.58 -0.40 -2.81 16 12 C -0.14 -2.31 10.05 -39.58 -0.40 -2.71 16 13 C -0.13 -2.27 9.70 -39.58 -0.38 -2.65 16 14 N -0.66 -12.50 5.71 -100.95 -0.58 -13.07 16 15 C 0.18 4.13 0.90 -68.87 -0.06 4.07 16 16 H 0.04 0.96 5.11 -51.93 -0.27 0.70 16 17 C -0.18 -3.98 8.73 37.16 0.32 -3.65 16 18 C -0.48 -12.88 8.62 -34.44 -0.30 -13.18 16 19 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 20 C 0.07 2.03 5.45 -17.82 -0.10 1.94 16 21 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 22 Si 0.87 22.46 24.41 -169.99 -4.15 18.31 16 23 H -0.28 -7.21 6.83 56.52 0.39 -6.82 16 24 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 25 H -0.27 -6.77 6.53 56.52 0.37 -6.40 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.86 4.89 -51.93 -0.25 0.60 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 1.03 6.58 -51.93 -0.34 0.69 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 36 H 0.07 1.12 8.09 -51.93 -0.42 0.70 16 37 H 0.13 2.60 8.06 -52.49 -0.42 2.18 16 38 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 39 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 40 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 41 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.33 5.94 6.19 -39.29 -0.24 5.69 16 43 H 0.03 0.51 6.34 -51.93 -0.33 0.18 16 44 H 0.05 1.03 8.03 -51.93 -0.42 0.62 16 45 H 0.04 1.01 3.21 -51.93 -0.17 0.85 16 46 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 346.92 15.07 5.23 5.23 Total: -1.00 -29.07 346.92 -8.91 -37.98 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -7.83 Total: 8.32 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: -2.35 Total: -30.27 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.20 Total: -39.56 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.15 Total: 18.31 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.07 -8.91 -37.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169060983.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.266 kcal (2) G-P(sol) polarization free energy of solvation -29.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds