Wall clock time and date at job start Mon Mar 30 2020 01:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46824 * 2 1 4 4 C 1.52999 * 109.47240 * 120.00076 * 2 1 3 5 5 C 1.52994 * 109.47064 * 66.11305 * 4 2 1 6 6 H 1.08998 * 109.47391 * 306.70763 * 5 4 2 7 7 C 1.53006 * 109.47063 * 186.70781 * 5 4 2 8 8 C 1.50694 * 109.46851 * 175.00152 * 7 5 4 9 9 C 1.38239 * 120.00405 * 90.00383 * 8 7 5 10 10 C 1.38234 * 120.00390 * 180.25371 * 9 8 7 11 11 C 1.38233 * 119.99731 * 359.52861 * 10 9 8 12 12 C 1.38238 * 120.00450 * 0.42378 * 11 10 9 13 13 C 1.38242 * 119.99737 * 359.81186 * 12 11 10 14 14 N 1.46902 * 109.47255 * 66.70792 * 5 4 2 15 15 C 1.46898 * 111.00285 * 218.48948 * 14 5 4 16 16 H 1.09003 * 109.46960 * 329.34006 * 15 14 5 17 17 C 1.53002 * 109.47179 * 89.33486 * 15 14 5 18 18 C 1.50694 * 109.47143 * 209.33819 * 15 14 5 19 19 H 1.07999 * 120.00365 * 359.97438 * 18 15 14 20 20 C 1.37876 * 119.99942 * 180.02562 * 18 15 14 21 21 N 1.31514 * 119.99940 * 180.02562 * 20 18 15 22 22 Si 1.86808 * 120.00133 * 359.97438 * 20 18 15 23 23 H 1.48494 * 109.47054 * 89.99696 * 22 20 18 24 24 H 1.48503 * 109.47152 * 210.00227 * 22 20 18 25 25 H 1.48497 * 109.46661 * 330.00138 * 22 20 18 26 26 H 1.08999 * 109.47694 * 59.99507 * 1 2 3 27 27 H 1.09003 * 109.47013 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47027 * 299.99725 * 1 2 3 29 29 H 1.09000 * 109.47027 * 240.00274 * 2 1 3 30 30 H 1.08999 * 109.46814 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47063 * 299.99805 * 3 2 1 32 32 H 1.09000 * 109.47094 * 60.00316 * 3 2 1 33 33 H 1.09008 * 109.46763 * 306.11373 * 4 2 1 34 34 H 1.08993 * 109.47119 * 186.11665 * 4 2 1 35 35 H 1.08994 * 109.46858 * 55.00294 * 7 5 4 36 36 H 1.08998 * 109.46895 * 294.99788 * 7 5 4 37 37 H 1.07999 * 119.99190 * 359.97438 * 9 8 7 38 38 H 1.07996 * 120.00424 * 179.72491 * 10 9 8 39 39 H 1.08006 * 120.00051 * 180.21700 * 11 10 9 40 40 H 1.08001 * 120.00490 * 179.78747 * 12 11 10 41 41 H 1.07997 * 120.00058 * 179.97438 * 13 12 11 42 42 H 1.00901 * 110.99561 * 342.44758 * 14 5 4 43 43 H 1.09002 * 109.47179 * 294.93508 * 17 15 14 44 44 H 1.08996 * 109.46695 * 54.93384 * 17 15 14 45 45 H 1.08997 * 109.47045 * 174.93383 * 17 15 14 46 46 H 0.97007 * 120.00002 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6593 -2.2012 1.1748 6 1 0.5875 -2.2923 0.9988 7 6 2.0198 -2.8875 2.4939 8 6 1.5343 -4.3139 2.4670 9 6 2.3579 -5.3155 1.9881 10 6 1.9107 -6.6232 1.9586 11 6 0.6433 -6.9306 2.4170 12 6 -0.1801 -5.9293 2.8968 13 6 0.2654 -4.6208 2.9218 14 7 2.3923 -2.8406 0.0739 15 6 1.5453 -3.8151 -0.6267 16 1 0.8301 -4.2453 0.0746 17 6 0.7911 -3.1146 -1.7587 18 6 2.4077 -4.9100 -1.1997 19 1 3.4780 -4.8843 -1.0581 20 6 1.8303 -5.9440 -1.9057 21 7 2.5829 -6.8998 -2.4054 22 14 -0.0210 -5.9882 -2.1514 23 1 -0.3717 -5.2684 -3.4019 24 1 -0.4740 -7.3991 -2.2485 25 1 -0.6889 -5.3321 -0.9987 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.5900 -0.2745 2.1359 34 1 3.1244 -0.6274 1.3056 35 1 1.5459 -2.3579 3.3203 36 1 3.1016 -2.8744 2.6265 37 1 3.3492 -5.0756 1.6329 38 1 2.5525 -7.4050 1.5804 39 1 0.2951 -7.9528 2.3972 40 1 -1.1715 -6.1690 3.2517 41 1 -0.3780 -3.8384 3.2962 42 1 2.7561 -2.1512 -0.5668 43 1 0.1005 -2.3839 -1.3376 44 1 1.5029 -2.6082 -2.4105 45 1 0.2326 -3.8527 -2.3344 46 1 2.1767 -7.6275 -2.9018 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169060983.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:24 Heat of formation + Delta-G solvation = -6.800862 kcal Electronic energy + Delta-G solvation = -22884.783392 eV Core-core repulsion = 19965.847810 eV Total energy + Delta-G solvation = -2918.935582 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.44420 -38.90531 -36.41586 -34.78586 -33.50703 -31.54068 -31.48882 -28.68558 -28.02170 -26.96746 -26.95013 -23.26447 -22.95968 -22.10257 -21.31299 -20.48163 -18.57754 -17.51159 -17.02427 -16.50927 -16.20946 -15.86588 -15.50994 -15.25566 -15.12287 -14.60760 -14.20107 -14.12689 -14.01875 -13.88284 -13.74478 -13.63359 -13.01714 -12.90251 -12.85358 -12.75798 -12.46465 -12.24687 -12.14896 -11.96483 -11.90419 -11.63919 -11.49541 -11.44998 -11.37973 -11.12414 -10.89000 -10.65185 -9.56964 -9.35360 -8.80633 -8.18552 -6.13947 0.66922 0.76010 1.24102 1.32489 1.39200 2.35039 3.08694 3.19193 3.60658 3.86479 4.02038 4.11889 4.18297 4.23071 4.32804 4.42785 4.48393 4.53807 4.59183 4.65212 4.69787 4.76253 4.80726 4.83208 4.86872 4.87784 4.97601 5.01229 5.05545 5.12140 5.14993 5.22808 5.27803 5.39136 5.41376 5.45385 5.48295 5.55370 5.57298 5.73486 5.81122 5.86909 6.01387 6.21544 6.36400 6.84715 6.90838 6.95288 7.49324 8.98818 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.014078 B = 0.008303 C = 0.006247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.491831 B = 3371.329403 C = 4480.732142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.102 4.102 3 C -0.139 4.139 4 C -0.111 4.111 5 C 0.091 3.909 6 H 0.039 0.961 7 C -0.063 4.063 8 C -0.079 4.079 9 C -0.077 4.077 10 C -0.131 4.131 11 C -0.145 4.145 12 C -0.135 4.135 13 C -0.135 4.135 14 N -0.672 5.672 15 C 0.198 3.802 16 H 0.027 0.973 17 C -0.181 4.181 18 C -0.464 4.464 19 H 0.038 0.962 20 C 0.020 3.980 21 N -0.950 5.950 22 Si 0.929 3.071 23 H -0.276 1.276 24 H -0.306 1.306 25 H -0.257 1.257 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.124 0.876 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.333 0.667 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.026 0.974 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.995 13.364 10.851 18.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.196 4.196 4 C -0.148 4.148 5 C -0.019 4.019 6 H 0.057 0.943 7 C -0.101 4.101 8 C -0.079 4.079 9 C -0.095 4.095 10 C -0.149 4.149 11 C -0.163 4.163 12 C -0.153 4.153 13 C -0.153 4.153 14 N -0.303 5.303 15 C 0.088 3.912 16 H 0.045 0.955 17 C -0.240 4.240 18 C -0.503 4.503 19 H 0.056 0.944 20 C -0.176 4.176 21 N -0.593 5.593 22 Si 0.759 3.241 23 H -0.203 1.203 24 H -0.235 1.235 25 H -0.182 1.182 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.142 0.858 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.153 0.847 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.044 0.956 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.698 12.760 11.173 17.892 hybrid contribution -1.078 -0.484 -1.481 1.895 sum -6.776 12.276 9.692 17.045 Atomic orbital electron populations 1.21912 0.95394 1.01061 1.02127 1.21153 0.95938 0.96968 0.98027 1.21763 1.00996 0.94795 1.02064 1.21858 1.01680 0.92769 0.98537 1.21622 0.95851 0.92923 0.91519 0.94255 1.20696 1.01435 0.90648 0.97340 1.19993 0.94178 0.96109 0.97667 1.20883 1.00011 0.92424 0.96203 1.21151 0.97007 0.97198 0.99523 1.21246 0.94360 1.00079 1.00603 1.21293 1.00060 0.93122 1.00821 1.21254 0.95729 0.96882 1.01390 1.60494 1.37646 1.18556 1.13650 1.19394 0.91061 0.90385 0.90390 0.95520 1.22856 1.00389 0.99759 1.00949 1.21096 0.94116 1.05096 1.29969 0.94373 1.25471 1.00420 0.95645 0.96052 1.70023 1.36592 1.13396 1.39243 0.86166 0.83598 0.75323 0.79018 1.20340 1.23487 1.18177 0.92769 0.94014 0.91425 0.92804 0.92573 0.92738 0.91739 0.89707 0.91140 0.89140 0.91220 0.87972 0.88296 0.85776 0.84273 0.84324 0.84748 0.92534 0.92775 0.95587 0.93276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.83 71.98 0.64 -2.48 16 2 C -0.10 -2.20 2.82 -10.79 -0.03 -2.23 16 3 C -0.14 -2.41 9.19 71.98 0.66 -1.74 16 4 C -0.11 -2.42 4.12 30.59 0.13 -2.29 16 5 C 0.09 2.63 2.00 44.91 0.09 2.72 16 6 H 0.04 1.23 5.68 -2.39 -0.01 1.22 16 7 C -0.06 -1.78 5.03 29.85 0.15 -1.63 16 8 C -0.08 -2.72 3.62 -19.86 -0.07 -2.79 16 9 C -0.08 -3.11 7.36 22.27 0.16 -2.95 16 10 C -0.13 -5.36 10.05 22.27 0.22 -5.14 16 11 C -0.14 -5.19 10.05 22.27 0.22 -4.97 16 12 C -0.14 -4.26 10.05 22.27 0.22 -4.04 16 13 C -0.13 -4.17 9.70 22.27 0.22 -3.96 16 14 N -0.67 -24.84 5.71 -473.31 -2.70 -27.55 16 15 C 0.20 8.81 0.90 44.17 0.04 8.85 16 16 H 0.03 1.29 5.11 -2.39 -0.01 1.28 16 17 C -0.18 -7.49 8.73 71.98 0.63 -6.86 16 18 C -0.46 -25.66 8.62 25.60 0.22 -25.44 16 19 H 0.04 2.39 8.06 -2.91 -0.02 2.36 16 20 C 0.02 1.17 5.45 84.65 0.46 1.63 16 21 N -0.95 -59.72 13.96 21.45 0.30 -59.42 16 22 Si 0.93 46.72 24.41 68.60 1.67 48.40 16 23 H -0.28 -13.41 6.83 99.48 0.68 -12.74 16 24 H -0.31 -15.64 7.11 99.48 0.71 -14.93 16 25 H -0.26 -12.35 6.53 99.48 0.65 -11.70 16 26 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.04 1.04 4.89 -2.39 -0.01 1.02 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.05 1.38 6.58 -2.39 -0.02 1.37 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.09 1.99 8.08 -2.39 -0.02 1.97 16 36 H 0.07 2.02 8.09 -2.39 -0.02 2.00 16 37 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 38 H 0.10 4.24 8.06 -2.91 -0.02 4.22 16 39 H 0.12 3.92 8.06 -2.91 -0.02 3.90 16 40 H 0.14 3.47 8.06 -2.91 -0.02 3.44 16 41 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 42 H 0.33 11.79 6.19 -89.69 -0.56 11.24 16 43 H 0.06 2.00 6.34 -2.39 -0.02 1.98 16 44 H 0.05 2.16 8.03 -2.39 -0.02 2.14 16 45 H 0.03 1.16 3.21 -2.39 -0.01 1.15 16 46 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 Total: -1.00 -64.87 346.92 3.53 -61.34 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: 0.30 Total: 30.56 kcal Atomic # 6 Polarization: -57.29 SS G_CDS: 3.96 Total: -53.32 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -2.40 Total: -86.97 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.67 Total: 48.40 kcal Total: -64.87 3.53 -61.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169060983.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.536 kcal (2) G-P(sol) polarization free energy of solvation -64.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds