Wall clock time and date at job start Mon Mar 30 2020 01:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47426 * 2 1 4 4 H 1.09001 * 109.46865 * 306.93410 * 3 2 1 5 5 C 1.52995 * 109.47384 * 186.93438 * 3 2 1 6 6 C 1.53002 * 109.47227 * 173.94484 * 5 3 2 7 7 C 1.53003 * 109.47143 * 175.00347 * 6 5 3 8 8 C 1.53005 * 109.46954 * 294.99838 * 6 5 3 9 9 N 1.46492 * 109.46882 * 66.93180 * 3 2 1 10 10 C 1.36944 * 120.00153 * 53.56230 * 9 3 2 11 11 H 1.07997 * 119.99642 * 323.68765 * 10 9 3 12 12 C 1.38807 * 120.00186 * 143.68821 * 10 9 3 13 13 N 1.31614 * 120.00159 * 169.20369 * 12 10 9 14 14 Si 1.86803 * 120.00157 * 349.20171 * 12 10 9 15 15 H 1.48499 * 109.47290 * 95.75656 * 14 12 10 16 16 H 1.48496 * 109.47255 * 215.76010 * 14 12 10 17 17 H 1.48504 * 109.46916 * 335.75491 * 14 12 10 18 18 C 1.46507 * 120.00437 * 233.55605 * 9 3 2 19 19 C 1.50703 * 109.46616 * 85.56701 * 18 9 3 20 20 C 1.38233 * 120.00064 * 269.72787 * 19 18 9 21 21 C 1.38240 * 119.99781 * 179.76891 * 20 19 18 22 22 C 1.38232 * 119.99917 * 0.51126 * 21 20 19 23 23 C 1.38241 * 120.00289 * 359.74239 * 22 21 20 24 24 C 1.38232 * 119.99772 * 90.00804 * 19 18 9 25 25 H 1.09000 * 109.46973 * 59.99798 * 1 2 3 26 26 H 1.08995 * 109.46802 * 299.99772 * 1 2 3 27 27 H 1.09002 * 109.46958 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47344 * 119.99927 * 2 1 3 29 29 H 1.09008 * 109.46979 * 239.99994 * 2 1 3 30 30 H 1.09001 * 109.47581 * 293.94582 * 5 3 2 31 31 H 1.08998 * 109.47122 * 53.94522 * 5 3 2 32 32 H 1.08989 * 109.46927 * 54.99736 * 6 5 3 33 33 H 1.08997 * 109.47256 * 59.99413 * 7 6 5 34 34 H 1.08997 * 109.46860 * 179.97438 * 7 6 5 35 35 H 1.09004 * 109.46654 * 299.99831 * 7 6 5 36 36 H 1.08997 * 109.47075 * 300.00361 * 8 6 5 37 37 H 1.09004 * 109.46730 * 59.99986 * 8 6 5 38 38 H 1.08997 * 109.47145 * 179.97438 * 8 6 5 39 39 H 0.97001 * 120.00208 * 179.97438 * 13 12 10 40 40 H 1.08991 * 109.47341 * 205.56811 * 18 9 3 41 41 H 1.08997 * 109.46768 * 325.57607 * 18 9 3 42 42 H 1.07995 * 120.00167 * 0.02562 * 20 19 18 43 43 H 1.08002 * 119.99974 * 180.23248 * 21 20 19 44 44 H 1.07995 * 120.00554 * 179.72652 * 22 21 20 45 45 H 1.07995 * 120.00375 * 179.97438 * 23 22 21 46 46 H 1.08004 * 120.00284 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5790 1.9909 -0.8215 5 6 3.5601 1.4460 -0.1741 6 6 4.0528 2.8866 -0.3255 7 6 5.5820 2.9001 -0.3746 8 6 3.4957 3.4827 -1.6199 9 7 1.6926 2.0832 1.2707 10 6 2.0497 1.4946 2.4545 11 1 2.0301 0.4191 2.5503 12 6 2.4368 2.2803 3.5314 13 7 2.5743 1.7408 4.7239 14 14 2.7627 4.1035 3.2879 15 1 1.5436 4.8755 3.6387 16 1 3.8855 4.5268 4.1627 17 1 3.1182 4.3576 1.8686 18 6 0.9633 3.3538 1.2752 19 6 -0.5167 3.0837 1.1867 20 6 -1.1325 3.0063 -0.0485 21 6 -2.4892 2.7538 -0.1298 22 6 -3.2319 2.5891 1.0243 23 6 -2.6171 2.6716 2.2597 24 6 -1.2594 2.9190 2.3408 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8901 30 1 4.0271 0.9923 0.7000 31 1 3.8251 0.8759 -1.0646 32 1 3.7112 3.4784 0.5236 33 1 5.9235 2.3081 -1.2238 34 1 5.9329 3.9263 -0.4829 35 1 5.9788 2.4753 0.5475 36 1 3.8372 2.8908 -2.4690 37 1 2.4063 3.4731 -1.5849 38 1 3.8463 4.5091 -1.7275 39 1 2.8452 2.2898 5.4764 40 1 1.1796 3.8937 2.1970 41 1 1.2747 3.9545 0.4206 42 1 -0.5530 3.1391 -0.9501 43 1 -2.9696 2.6896 -1.0950 44 1 -4.2926 2.3962 0.9610 45 1 -3.1974 2.5434 3.1614 46 1 -0.7791 2.9835 3.3060 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172404264.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:37 Heat of formation + Delta-G solvation = 31.752913 kcal Electronic energy + Delta-G solvation = -23197.636251 eV Core-core repulsion = 20280.372486 eV Total energy + Delta-G solvation = -2917.263764 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.98137 -37.51664 -34.73759 -32.85367 -31.75979 -30.35324 -30.04873 -27.91200 -26.80851 -25.52144 -23.83304 -22.59048 -21.93037 -20.80458 -19.65963 -19.05800 -16.78786 -15.97806 -15.55201 -15.23156 -14.69698 -14.27343 -14.18207 -13.78483 -13.52931 -13.08379 -12.88488 -12.66980 -12.58181 -12.25956 -12.13613 -12.08818 -11.82380 -11.60184 -11.41013 -11.05137 -10.96160 -10.90551 -10.66888 -10.58837 -10.26150 -10.13619 -10.03064 -9.83357 -9.64817 -9.42475 -9.11282 -8.58506 -8.35311 -8.10539 -6.81516 -5.92802 -3.38303 1.92433 1.96651 3.28939 3.40998 3.47698 4.31954 4.49825 5.08288 5.32638 5.33534 5.38715 5.40620 5.49278 5.51488 5.53327 5.71555 5.85461 5.92868 5.94973 5.98139 6.03715 6.07732 6.13558 6.18811 6.21223 6.27469 6.34924 6.40507 6.43651 6.48790 6.54934 6.59003 6.59087 6.63489 6.81744 6.84878 6.97722 7.03859 7.06615 7.11709 7.14244 7.22132 7.34064 7.58435 8.08840 8.42905 8.99936 9.73699 10.12785 11.22363 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.014441 B = 0.008808 C = 0.007089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.515512 B = 3178.251298 C = 3949.026134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 C 0.181 3.819 4 H 0.053 0.947 5 C -0.119 4.119 6 C -0.107 4.107 7 C -0.142 4.142 8 C -0.143 4.143 9 N -0.588 5.588 10 C -0.248 4.248 11 H 0.084 0.916 12 C 0.030 3.970 13 N -0.911 5.911 14 Si 0.882 3.118 15 H -0.291 1.291 16 H -0.309 1.309 17 H -0.256 1.256 18 C 0.169 3.831 19 C -0.077 4.077 20 C -0.114 4.114 21 C -0.128 4.128 22 C -0.138 4.138 23 C -0.124 4.124 24 C -0.097 4.097 25 H 0.038 0.962 26 H 0.069 0.931 27 H 0.032 0.968 28 H 0.069 0.931 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.043 0.957 35 H 0.053 0.947 36 H 0.046 0.954 37 H 0.053 0.947 38 H 0.042 0.958 39 H 0.261 0.739 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.110 0.890 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.112 0.888 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.086 2.486 -10.921 11.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 C 0.075 3.925 4 H 0.071 0.929 5 C -0.158 4.158 6 C -0.125 4.125 7 C -0.199 4.199 8 C -0.200 4.200 9 N -0.308 5.308 10 C -0.377 4.377 11 H 0.101 0.899 12 C -0.169 4.169 13 N -0.553 5.553 14 Si 0.717 3.283 15 H -0.220 1.220 16 H -0.238 1.238 17 H -0.182 1.182 18 C 0.044 3.956 19 C -0.080 4.080 20 C -0.133 4.133 21 C -0.146 4.146 22 C -0.157 4.157 23 C -0.142 4.142 24 C -0.116 4.116 25 H 0.057 0.943 26 H 0.088 0.912 27 H 0.051 0.949 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.127 0.873 45 H 0.130 0.870 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.983 2.492 -10.748 11.729 hybrid contribution 0.077 0.911 0.139 0.924 sum -3.906 3.402 -10.609 11.806 Atomic orbital electron populations 1.21699 0.96321 0.99609 1.01937 1.21854 0.95828 0.98458 1.00787 1.20456 0.92318 0.92185 0.87558 0.92939 1.21991 0.98092 0.95154 1.00610 1.21286 0.94405 0.98239 0.98535 1.21800 0.96585 1.00373 1.01185 1.21872 1.00870 0.99620 0.97677 1.44119 1.61092 1.23205 1.02427 1.18750 1.38419 0.93022 0.87498 0.89891 1.25388 0.98091 0.97592 0.95848 1.69755 1.50401 1.35800 0.99382 0.86970 0.76411 0.87030 0.77938 1.21995 1.23809 1.18209 1.20334 0.86261 0.89631 0.99349 1.20941 0.97758 0.96760 0.92547 1.20901 0.94277 1.01143 0.97007 1.20946 0.94419 1.01615 0.97629 1.20918 0.99059 1.02815 0.92866 1.21079 0.95138 1.00838 0.97165 1.21127 0.93314 0.98313 0.98874 0.94314 0.91187 0.94880 0.91205 0.93870 0.90930 0.93810 0.89233 0.93599 0.93823 0.92787 0.93536 0.92806 0.93849 0.92885 0.92756 0.93348 0.87208 0.87249 0.87270 0.86996 0.86149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.04 37.16 0.34 -2.09 16 2 C -0.13 -2.34 5.27 -26.73 -0.14 -2.48 16 3 C 0.18 3.33 1.99 -67.94 -0.14 3.19 16 4 H 0.05 0.91 6.06 -51.93 -0.31 0.59 16 5 C -0.12 -2.11 4.16 -26.73 -0.11 -2.22 16 6 C -0.11 -1.81 2.87 -90.61 -0.26 -2.07 16 7 C -0.14 -2.18 9.19 37.16 0.34 -1.83 16 8 C -0.14 -2.08 8.96 37.16 0.33 -1.74 16 9 N -0.59 -12.48 1.07 -167.03 -0.18 -12.66 16 10 C -0.25 -6.33 8.87 -15.06 -0.13 -6.46 16 11 H 0.08 2.35 6.61 -52.49 -0.35 2.01 16 12 C 0.03 0.81 5.45 -17.43 -0.10 0.72 16 13 N -0.91 -26.90 13.97 55.49 0.78 -26.13 16 14 Si 0.88 21.41 24.29 -169.99 -4.13 17.28 16 15 H -0.29 -7.05 6.91 56.52 0.39 -6.66 16 16 H -0.31 -7.87 7.11 56.52 0.40 -7.47 16 17 H -0.26 -5.76 4.16 56.52 0.23 -5.52 16 18 C 0.17 3.47 3.81 -5.19 -0.02 3.45 16 19 C -0.08 -1.46 4.20 -104.62 -0.44 -1.90 16 20 C -0.11 -1.87 8.20 -39.58 -0.32 -2.20 16 21 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 22 C -0.14 -2.07 10.05 -39.58 -0.40 -2.46 16 23 C -0.12 -2.07 10.05 -39.58 -0.40 -2.46 16 24 C -0.10 -1.89 9.70 -39.58 -0.38 -2.28 16 25 H 0.04 0.62 7.60 -51.93 -0.39 0.23 16 26 H 0.07 1.42 6.31 -51.93 -0.33 1.09 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 1.42 6.48 -51.93 -0.34 1.09 16 29 H 0.04 0.69 8.13 -51.92 -0.42 0.26 16 30 H 0.07 1.47 7.64 -51.93 -0.40 1.08 16 31 H 0.04 0.69 8.13 -51.93 -0.42 0.27 16 32 H 0.09 1.80 4.71 -51.94 -0.24 1.56 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.78 6.26 -51.93 -0.33 0.46 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.05 1.24 2.40 -51.93 -0.12 1.11 16 41 H 0.05 0.92 7.83 -51.93 -0.41 0.51 16 42 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 43 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 44 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 45 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 46 H 0.12 2.57 8.06 -52.48 -0.42 2.15 16 LS Contribution 344.97 15.07 5.20 5.20 Total: -1.00 -27.43 344.97 -8.59 -36.02 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -8.03 Total: 5.43 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: -2.23 Total: -25.15 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.60 Total: -38.79 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.13 Total: 17.28 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.43 -8.59 -36.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172404264.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.773 kcal (2) G-P(sol) polarization free energy of solvation -27.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds