Wall clock time and date at job start Mon Mar 30 2020 01:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47426 * 2 1 4 4 H 1.09001 * 109.46865 * 306.93410 * 3 2 1 5 5 C 1.52995 * 109.47384 * 186.93438 * 3 2 1 6 6 C 1.53002 * 109.47227 * 173.94484 * 5 3 2 7 7 C 1.53003 * 109.47143 * 175.00347 * 6 5 3 8 8 C 1.53005 * 109.46954 * 294.99838 * 6 5 3 9 9 N 1.46492 * 109.46882 * 66.93180 * 3 2 1 10 10 C 1.36944 * 120.00153 * 53.56230 * 9 3 2 11 11 H 1.07997 * 119.99642 * 323.68765 * 10 9 3 12 12 C 1.38807 * 120.00186 * 143.68821 * 10 9 3 13 13 N 1.31614 * 120.00159 * 169.20369 * 12 10 9 14 14 Si 1.86803 * 120.00157 * 349.20171 * 12 10 9 15 15 H 1.48499 * 109.47290 * 95.75656 * 14 12 10 16 16 H 1.48496 * 109.47255 * 215.76010 * 14 12 10 17 17 H 1.48504 * 109.46916 * 335.75491 * 14 12 10 18 18 C 1.46507 * 120.00437 * 233.55605 * 9 3 2 19 19 C 1.50703 * 109.46616 * 85.56701 * 18 9 3 20 20 C 1.38233 * 120.00064 * 269.72787 * 19 18 9 21 21 C 1.38240 * 119.99781 * 179.76891 * 20 19 18 22 22 C 1.38232 * 119.99917 * 0.51126 * 21 20 19 23 23 C 1.38241 * 120.00289 * 359.74239 * 22 21 20 24 24 C 1.38232 * 119.99772 * 90.00804 * 19 18 9 25 25 H 1.09000 * 109.46973 * 59.99798 * 1 2 3 26 26 H 1.08995 * 109.46802 * 299.99772 * 1 2 3 27 27 H 1.09002 * 109.46958 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47344 * 119.99927 * 2 1 3 29 29 H 1.09008 * 109.46979 * 239.99994 * 2 1 3 30 30 H 1.09001 * 109.47581 * 293.94582 * 5 3 2 31 31 H 1.08998 * 109.47122 * 53.94522 * 5 3 2 32 32 H 1.08989 * 109.46927 * 54.99736 * 6 5 3 33 33 H 1.08997 * 109.47256 * 59.99413 * 7 6 5 34 34 H 1.08997 * 109.46860 * 179.97438 * 7 6 5 35 35 H 1.09004 * 109.46654 * 299.99831 * 7 6 5 36 36 H 1.08997 * 109.47075 * 300.00361 * 8 6 5 37 37 H 1.09004 * 109.46730 * 59.99986 * 8 6 5 38 38 H 1.08997 * 109.47145 * 179.97438 * 8 6 5 39 39 H 0.97001 * 120.00208 * 179.97438 * 13 12 10 40 40 H 1.08991 * 109.47341 * 205.56811 * 18 9 3 41 41 H 1.08997 * 109.46768 * 325.57607 * 18 9 3 42 42 H 1.07995 * 120.00167 * 0.02562 * 20 19 18 43 43 H 1.08002 * 119.99974 * 180.23248 * 21 20 19 44 44 H 1.07995 * 120.00554 * 179.72652 * 22 21 20 45 45 H 1.07995 * 120.00375 * 179.97438 * 23 22 21 46 46 H 1.08004 * 120.00284 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5790 1.9909 -0.8215 5 6 3.5601 1.4460 -0.1741 6 6 4.0528 2.8866 -0.3255 7 6 5.5820 2.9001 -0.3746 8 6 3.4957 3.4827 -1.6199 9 7 1.6926 2.0832 1.2707 10 6 2.0497 1.4946 2.4545 11 1 2.0301 0.4191 2.5503 12 6 2.4368 2.2803 3.5314 13 7 2.5743 1.7408 4.7239 14 14 2.7627 4.1035 3.2879 15 1 1.5436 4.8755 3.6387 16 1 3.8855 4.5268 4.1627 17 1 3.1182 4.3576 1.8686 18 6 0.9633 3.3538 1.2752 19 6 -0.5167 3.0837 1.1867 20 6 -1.1325 3.0063 -0.0485 21 6 -2.4892 2.7538 -0.1298 22 6 -3.2319 2.5891 1.0243 23 6 -2.6171 2.6716 2.2597 24 6 -1.2594 2.9190 2.3408 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8901 30 1 4.0271 0.9923 0.7000 31 1 3.8251 0.8759 -1.0646 32 1 3.7112 3.4784 0.5236 33 1 5.9235 2.3081 -1.2238 34 1 5.9329 3.9263 -0.4829 35 1 5.9788 2.4753 0.5475 36 1 3.8372 2.8908 -2.4690 37 1 2.4063 3.4731 -1.5849 38 1 3.8463 4.5091 -1.7275 39 1 2.8452 2.2898 5.4764 40 1 1.1796 3.8937 2.1970 41 1 1.2747 3.9545 0.4206 42 1 -0.5530 3.1391 -0.9501 43 1 -2.9696 2.6896 -1.0950 44 1 -4.2926 2.3962 0.9610 45 1 -3.1974 2.5434 3.1614 46 1 -0.7791 2.9835 3.3060 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172404264.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:37 Heat of formation + Delta-G solvation = 19.296016 kcal Electronic energy + Delta-G solvation = -23198.176422 eV Core-core repulsion = 20280.372486 eV Total energy + Delta-G solvation = -2917.803936 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.40103 -38.95042 -36.20515 -34.43181 -33.58003 -31.72649 -31.52863 -29.36304 -27.98812 -27.21519 -25.45102 -24.09942 -23.27021 -22.20230 -21.18673 -20.54323 -18.49437 -17.55831 -17.20604 -16.82286 -16.11990 -15.66798 -15.65508 -15.12410 -14.92808 -14.58268 -14.41433 -14.22557 -14.10233 -14.01893 -13.51589 -13.41596 -13.14236 -12.91969 -12.89399 -12.62852 -12.39665 -12.29248 -12.17587 -12.01593 -11.87464 -11.65199 -11.55597 -11.44130 -11.06739 -10.99425 -10.75552 -10.62143 -9.65062 -9.46346 -8.65346 -8.06700 -5.46636 0.62223 0.65556 1.29593 1.39606 1.48468 2.45252 2.95338 3.28657 3.49047 3.97970 4.04425 4.13326 4.25307 4.26580 4.28405 4.39247 4.43351 4.49487 4.53760 4.62326 4.69945 4.74588 4.85147 4.87131 4.91356 4.97740 5.01608 5.05077 5.12338 5.16385 5.20714 5.25120 5.27369 5.30469 5.39829 5.52262 5.59326 5.66284 5.71621 5.72134 5.74583 5.78054 5.95447 6.06588 6.28742 6.32270 7.08492 7.75195 8.15019 9.12844 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.014441 B = 0.008808 C = 0.007089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.515512 B = 3178.251298 C = 3949.026134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.128 4.128 3 C 0.179 3.821 4 H 0.079 0.921 5 C -0.115 4.115 6 C -0.109 4.109 7 C -0.140 4.140 8 C -0.137 4.137 9 N -0.590 5.590 10 C -0.209 4.209 11 H 0.045 0.955 12 C -0.029 4.029 13 N -0.966 5.966 14 Si 0.937 3.063 15 H -0.297 1.297 16 H -0.330 1.330 17 H -0.225 1.225 18 C 0.168 3.832 19 C -0.094 4.094 20 C -0.111 4.111 21 C -0.119 4.119 22 C -0.130 4.130 23 C -0.131 4.131 24 C -0.129 4.129 25 H 0.061 0.939 26 H 0.037 0.963 27 H 0.040 0.960 28 H 0.032 0.968 29 H 0.072 0.928 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.033 0.967 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.254 0.746 40 H 0.028 0.972 41 H 0.071 0.929 42 H 0.132 0.868 43 H 0.149 0.851 44 H 0.144 0.856 45 H 0.123 0.877 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.703 3.240 -15.710 17.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.167 4.167 3 C 0.074 3.926 4 H 0.097 0.903 5 C -0.154 4.154 6 C -0.127 4.127 7 C -0.197 4.197 8 C -0.194 4.194 9 N -0.312 5.312 10 C -0.340 4.340 11 H 0.062 0.938 12 C -0.223 4.223 13 N -0.613 5.613 14 Si 0.771 3.229 15 H -0.226 1.226 16 H -0.261 1.261 17 H -0.149 1.149 18 C 0.044 3.956 19 C -0.096 4.096 20 C -0.130 4.130 21 C -0.136 4.136 22 C -0.148 4.148 23 C -0.149 4.149 24 C -0.148 4.148 25 H 0.080 0.920 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.090 0.910 42 H 0.150 0.850 43 H 0.166 0.834 44 H 0.162 0.838 45 H 0.141 0.859 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.620 3.256 -15.603 16.901 hybrid contribution 0.453 0.573 1.539 1.703 sum -5.166 3.829 -14.064 15.464 Atomic orbital electron populations 1.21594 0.95656 1.00047 1.01350 1.21819 0.96381 0.98078 1.00379 1.20663 0.93027 0.92373 0.86566 0.90325 1.21936 0.97208 0.96115 1.00117 1.21253 0.95576 0.97016 0.98895 1.21775 0.95438 1.01418 1.01103 1.21810 1.00798 1.00363 0.96430 1.44123 1.61739 1.23264 1.02048 1.18492 1.35320 0.91351 0.88825 0.93780 1.25906 0.99440 1.01272 0.95664 1.69906 1.53958 1.37107 1.00340 0.86093 0.75013 0.82793 0.79000 1.22602 1.26068 1.14898 1.20302 0.87719 0.88813 0.98807 1.20742 0.96684 0.98527 0.93673 1.21099 0.95329 1.00312 0.96266 1.21389 0.93684 0.99322 0.99235 1.21329 1.00786 1.00791 0.91901 1.21260 0.94001 1.00638 0.99037 1.21008 0.94996 1.01175 0.97650 0.91970 0.94414 0.94040 0.94923 0.90904 0.94751 0.91041 0.92703 0.91462 0.92637 0.94799 0.91492 0.92659 0.92845 0.93673 0.95458 0.91048 0.84991 0.83376 0.83845 0.85853 0.90131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 9.04 71.98 0.65 -3.59 16 2 C -0.13 -4.40 5.27 30.60 0.16 -4.24 16 3 C 0.18 6.24 1.99 44.99 0.09 6.33 16 4 H 0.08 2.38 6.06 -2.39 -0.01 2.37 16 5 C -0.11 -3.88 4.16 30.59 0.13 -3.75 16 6 C -0.11 -3.46 2.87 -10.79 -0.03 -3.49 16 7 C -0.14 -4.00 9.19 71.98 0.66 -3.34 16 8 C -0.14 -3.35 8.96 71.98 0.64 -2.71 16 9 N -0.59 -25.22 1.07 -682.36 -0.73 -25.95 16 10 C -0.21 -11.29 8.87 84.03 0.75 -10.54 16 11 H 0.04 2.71 6.61 -2.91 -0.02 2.69 16 12 C -0.03 -1.68 5.45 84.86 0.46 -1.22 16 13 N -0.97 -61.42 13.97 21.65 0.30 -61.12 16 14 Si 0.94 46.84 24.29 68.60 1.67 48.51 16 15 H -0.30 -14.86 6.91 99.48 0.69 -14.17 16 16 H -0.33 -17.40 7.11 99.48 0.71 -16.69 16 17 H -0.22 -9.96 4.16 99.48 0.41 -9.55 16 18 C 0.17 6.80 3.81 85.63 0.33 7.12 16 19 C -0.09 -3.45 4.20 -19.87 -0.08 -3.54 16 20 C -0.11 -3.22 8.20 22.27 0.18 -3.04 16 21 C -0.12 -2.93 10.05 22.27 0.22 -2.70 16 22 C -0.13 -3.38 10.05 22.27 0.22 -3.16 16 23 C -0.13 -4.24 10.05 22.27 0.22 -4.02 16 24 C -0.13 -5.14 9.70 22.27 0.22 -4.92 16 25 H 0.06 1.73 7.60 -2.39 -0.02 1.71 16 26 H 0.04 1.49 6.31 -2.39 -0.02 1.47 16 27 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.03 1.36 6.48 -2.38 -0.02 1.34 16 29 H 0.07 2.08 8.13 -2.38 -0.02 2.06 16 30 H 0.03 1.41 7.64 -2.39 -0.02 1.39 16 31 H 0.07 2.02 8.13 -2.39 -0.02 2.00 16 32 H 0.05 2.13 4.71 -2.39 -0.01 2.11 16 33 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.05 1.33 6.26 -2.38 -0.01 1.31 16 38 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.25 15.68 8.31 -92.71 -0.77 14.91 16 40 H 0.03 1.27 2.40 -2.39 -0.01 1.27 16 41 H 0.07 2.53 7.83 -2.39 -0.02 2.51 16 42 H 0.13 3.22 8.06 -2.91 -0.02 3.19 16 43 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 44 H 0.14 2.79 8.06 -2.91 -0.02 2.76 16 45 H 0.12 3.56 8.06 -2.91 -0.02 3.54 16 46 H 0.08 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -65.63 344.97 6.67 -58.96 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.61 Total: 20.41 kcal Atomic # 6 Polarization: -45.63 SS G_CDS: 4.82 Total: -40.81 kcal Atomic # 7 Polarization: -86.64 SS G_CDS: -0.43 Total: -87.07 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 1.67 Total: 48.51 kcal Total: -65.63 6.67 -58.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172404264.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.256 kcal (2) G-P(sol) polarization free energy of solvation -65.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds