Wall clock time and date at job start Mon Mar 30 2020 01:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47184 * 2 1 4 4 C 1.53002 * 109.46992 * 119.99821 * 2 1 3 5 5 H 1.09002 * 109.47222 * 53.94428 * 4 2 1 6 6 N 1.46903 * 109.47219 * 173.93713 * 4 2 1 7 7 C 1.46899 * 111.00382 * 277.67406 * 6 4 2 8 8 H 1.08994 * 109.46935 * 38.21561 * 7 6 4 9 9 C 1.52999 * 109.46697 * 278.21307 * 7 6 4 10 10 C 1.53001 * 109.46979 * 158.21739 * 7 6 4 11 11 C 1.53006 * 109.47021 * 294.99576 * 10 7 6 12 12 C 1.50695 * 109.46888 * 180.02562 * 11 10 7 13 13 H 1.07999 * 120.00372 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99757 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00182 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99904 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47084 * 60.00143 * 16 14 12 18 18 H 1.48509 * 109.47093 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47185 * 299.99940 * 16 14 12 20 20 C 1.50693 * 109.47116 * 293.94214 * 4 2 1 21 21 C 1.38238 * 120.00262 * 100.00162 * 20 4 2 22 22 C 1.38228 * 119.99921 * 179.97438 * 21 20 4 23 23 C 1.38236 * 120.00618 * 359.97438 * 22 21 20 24 24 C 1.38240 * 119.99652 * 359.95284 * 23 22 21 25 25 C 1.38232 * 119.99817 * 0.02562 * 24 23 22 26 26 H 1.08996 * 109.47192 * 305.28164 * 1 2 3 27 27 H 1.09000 * 109.46986 * 65.28026 * 1 2 3 28 28 H 1.09005 * 109.47022 * 185.27704 * 1 2 3 29 29 H 1.09000 * 109.46845 * 239.99603 * 2 1 3 30 30 H 1.08997 * 109.47464 * 53.73981 * 3 2 1 31 31 H 1.09003 * 109.47029 * 173.74408 * 3 2 1 32 32 H 1.09000 * 109.46829 * 293.73426 * 3 2 1 33 33 H 1.00905 * 110.99757 * 41.62914 * 6 4 2 34 34 H 1.08994 * 109.47635 * 299.99824 * 9 7 6 35 35 H 1.09008 * 109.46886 * 60.00659 * 9 7 6 36 36 H 1.09001 * 109.46668 * 179.97438 * 9 7 6 37 37 H 1.08994 * 109.47262 * 54.99931 * 10 7 6 38 38 H 1.08999 * 109.46896 * 174.99841 * 10 7 6 39 39 H 1.08998 * 109.46957 * 300.00483 * 11 10 7 40 40 H 1.08999 * 109.47068 * 60.00371 * 11 10 7 41 41 H 0.96999 * 120.00517 * 180.02562 * 15 14 12 42 42 H 1.07995 * 119.99706 * 0.25271 * 21 20 4 43 43 H 1.08010 * 119.99915 * 179.97438 * 22 21 20 44 44 H 1.07994 * 120.00154 * 179.97438 * 23 22 21 45 45 H 1.07992 * 119.99972 * 180.02562 * 24 23 22 46 46 H 1.08002 * 120.00273 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5908 -1.7128 1.3052 6 7 3.5017 -0.8492 1.1784 7 6 3.8900 -2.0036 0.3570 8 1 3.2148 -2.0871 -0.4945 9 6 3.8095 -3.2786 1.1989 10 6 5.3228 -1.8135 -0.1449 11 6 5.3775 -0.6094 -1.0874 12 6 6.7885 -0.4226 -1.5822 13 1 7.5685 -1.0950 -1.2567 14 6 7.0841 0.6075 -2.4497 15 7 6.1348 1.4273 -2.8448 16 14 8.8334 0.8396 -3.0625 17 1 9.2684 -0.3790 -3.7912 18 1 8.8868 2.0089 -3.9764 19 1 9.7359 1.0738 -1.9067 20 6 1.6638 0.0705 2.4751 21 6 0.5672 -0.3029 3.2295 22 6 0.2226 0.4231 4.3541 23 6 0.9747 1.5221 4.7249 24 6 2.0722 1.8945 3.9714 25 6 2.4171 1.1683 2.8469 26 1 -0.3633 0.5935 0.8389 27 1 -0.3633 0.4298 -0.9335 28 1 -0.3633 -1.0234 0.0945 29 1 1.8933 -0.5139 -0.8900 30 1 1.5881 1.9876 0.8286 31 1 3.1243 1.4445 0.1120 32 1 1.7711 1.9228 -0.9408 33 1 3.9226 -0.0004 0.8312 34 1 4.4847 -3.1951 2.0504 35 1 2.7886 -3.4140 1.5565 36 1 4.0971 -4.1352 0.5893 37 1 5.9851 -1.6413 0.7035 38 1 5.6421 -2.7081 -0.6794 39 1 4.7151 -0.7817 -1.9357 40 1 5.0581 0.2852 -0.5528 41 1 6.3426 2.1518 -3.4554 42 1 -0.0174 -1.1643 2.9426 43 1 -0.6345 0.1316 4.9433 44 1 0.7051 2.0894 5.6034 45 1 2.6600 2.7528 4.2613 46 1 3.2743 1.4595 2.2580 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172483931.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:51 Heat of formation + Delta-G solvation = -17.815845 kcal Electronic energy + Delta-G solvation = -22083.977988 eV Core-core repulsion = 19164.564761 eV Total energy + Delta-G solvation = -2919.413227 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.93368 -38.71495 -36.51891 -34.91732 -32.52732 -31.80380 -31.44628 -30.17931 -28.16383 -27.13165 -25.81816 -23.40621 -23.12075 -22.71290 -21.14837 -20.24380 -18.56751 -17.68166 -16.84875 -16.63871 -16.54517 -16.11740 -15.69468 -15.27601 -14.78180 -14.55127 -14.37029 -14.17232 -14.14410 -13.71428 -13.45446 -13.33952 -13.17947 -12.99564 -12.87151 -12.80964 -12.55612 -12.43304 -12.30034 -12.13876 -11.92566 -11.77740 -11.70314 -11.51888 -11.38142 -11.27432 -10.92044 -10.53377 -9.67704 -9.50331 -9.19334 -8.19334 -6.29749 0.58496 0.63392 1.38773 1.41129 1.48906 2.40477 2.96747 3.13431 3.34610 3.80980 3.90409 4.00376 4.14448 4.20764 4.21627 4.27267 4.36185 4.43274 4.47747 4.57281 4.67705 4.74723 4.77048 4.80338 4.87417 4.93631 5.00972 5.01560 5.05722 5.10164 5.13477 5.22731 5.25717 5.27664 5.35143 5.40541 5.45663 5.54297 5.68688 5.71874 5.74453 5.84897 5.85816 6.22797 6.26368 6.33591 6.46782 6.86026 7.39007 8.91263 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.020076 B = 0.004504 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.373267 B = 6215.247400 C = 6494.670810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.119 4.119 3 C -0.142 4.142 4 C 0.132 3.868 5 H 0.091 0.909 6 N -0.682 5.682 7 C 0.087 3.913 8 H 0.030 0.970 9 C -0.127 4.127 10 C -0.102 4.102 11 C 0.033 3.967 12 C -0.545 4.545 13 H 0.056 0.944 14 C 0.005 3.995 15 N -0.928 5.928 16 Si 0.959 3.041 17 H -0.268 1.268 18 H -0.283 1.283 19 H -0.269 1.269 20 C -0.063 4.063 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.130 4.130 24 C -0.134 4.134 25 C -0.115 4.115 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.034 0.966 32 H 0.045 0.955 33 H 0.339 0.661 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.056 0.944 39 H -0.017 1.017 40 H -0.002 1.002 41 H 0.262 0.738 42 H 0.134 0.866 43 H 0.144 0.856 44 H 0.140 0.860 45 H 0.127 0.873 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.873 -3.071 12.772 19.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.139 4.139 3 C -0.199 4.199 4 C 0.022 3.978 5 H 0.109 0.891 6 N -0.315 5.315 7 C -0.022 4.022 8 H 0.048 0.952 9 C -0.185 4.185 10 C -0.140 4.140 11 C -0.004 4.004 12 C -0.583 4.583 13 H 0.074 0.926 14 C -0.193 4.193 15 N -0.568 5.568 16 Si 0.784 3.216 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.194 1.194 20 C -0.063 4.063 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.148 4.148 24 C -0.152 4.152 25 C -0.134 4.134 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.161 0.839 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.001 0.999 40 H 0.016 0.984 41 H 0.071 0.929 42 H 0.152 0.848 43 H 0.162 0.838 44 H 0.158 0.842 45 H 0.145 0.855 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.823 -3.278 13.253 19.428 hybrid contribution 1.040 0.885 -1.775 2.240 sum -12.782 -2.393 11.478 17.345 Atomic orbital electron populations 1.21730 0.92983 1.02450 1.01963 1.21687 0.97961 0.96346 0.97920 1.21886 0.99894 0.96613 1.01511 1.20573 0.88057 0.97916 0.91205 0.89065 1.60879 1.07859 1.07337 1.55459 1.21515 0.95311 0.91917 0.93498 0.95213 1.21720 1.01886 0.95257 0.99656 1.21640 0.95472 0.98594 0.98317 1.18942 0.95062 0.93244 0.93141 1.21657 0.95928 1.13281 1.27434 0.92584 1.25886 1.01399 0.95545 0.96479 1.70077 1.34439 1.17694 1.34543 0.85596 0.79917 0.77751 0.78362 1.19326 1.20840 1.19356 1.19701 0.95397 0.95341 0.95870 1.21178 0.96778 1.00633 0.95413 1.21381 1.00410 0.95525 0.96851 1.21384 0.95381 0.97781 1.00284 1.21338 0.98224 1.00312 0.95367 1.21039 0.99228 0.95811 0.97313 0.91932 0.92824 0.91449 0.93085 0.91311 0.94668 0.93572 0.83870 0.92619 0.92108 0.91892 0.92967 0.92526 0.99861 0.98399 0.92919 0.84811 0.83780 0.84203 0.85492 0.87998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.80 71.98 0.63 -2.45 16 2 C -0.12 -3.50 2.75 -10.79 -0.03 -3.53 16 3 C -0.14 -4.62 7.74 71.98 0.56 -4.06 16 4 C 0.13 3.75 1.92 44.17 0.08 3.84 16 5 H 0.09 2.38 6.75 -2.39 -0.02 2.36 16 6 N -0.68 -23.15 5.55 -473.32 -2.63 -25.77 16 7 C 0.09 3.02 2.48 44.92 0.11 3.13 16 8 H 0.03 1.08 6.90 -2.39 -0.02 1.06 16 9 C -0.13 -3.56 9.37 71.98 0.67 -2.88 16 10 C -0.10 -4.30 4.77 30.60 0.15 -4.15 16 11 C 0.03 1.75 4.79 29.85 0.14 1.89 16 12 C -0.55 -31.33 9.11 25.60 0.23 -31.09 16 13 H 0.06 3.12 7.74 -2.91 -0.02 3.09 16 14 C 0.01 0.29 5.46 84.65 0.46 0.76 16 15 N -0.93 -56.30 13.29 21.45 0.28 -56.01 16 16 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 20 C -0.06 -1.65 3.88 -19.87 -0.08 -1.73 16 21 C -0.12 -2.63 8.94 22.27 0.20 -2.43 16 22 C -0.12 -2.35 10.05 22.27 0.22 -2.12 16 23 C -0.13 -2.60 10.05 22.27 0.22 -2.37 16 24 C -0.13 -3.22 10.05 22.27 0.22 -3.00 16 25 C -0.12 -3.26 7.09 22.27 0.16 -3.10 16 26 H 0.06 1.37 7.12 -2.39 -0.02 1.36 16 27 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.05 1.75 7.12 -2.39 -0.02 1.73 16 30 H 0.07 2.03 6.18 -2.39 -0.01 2.02 16 31 H 0.03 1.33 5.58 -2.39 -0.01 1.32 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 33 H 0.34 13.27 3.58 -89.69 -0.32 12.94 16 34 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.06 1.49 7.17 -2.38 -0.02 1.47 16 36 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 39 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 40 H 0.00 -0.12 6.25 -2.39 -0.01 -0.14 16 41 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 42 H 0.13 2.35 8.04 -2.91 -0.02 2.32 16 43 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 44 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 45 H 0.13 2.67 8.06 -2.91 -0.02 2.64 16 46 H 0.10 3.27 6.12 -2.91 -0.02 3.25 16 Total: -1.00 -63.28 353.08 4.27 -59.02 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: 0.61 Total: 29.35 kcal Atomic # 6 Polarization: -57.27 SS G_CDS: 3.97 Total: -53.31 kcal Atomic # 7 Polarization: -79.44 SS G_CDS: -2.34 Total: -81.78 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -63.28 4.27 -59.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483931.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.204 kcal (2) G-P(sol) polarization free energy of solvation -63.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds