Wall clock time and date at job start Mon Mar 30 2020 01:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46753 * 2 1 4 4 C 1.52996 * 109.47194 * 120.00051 * 2 1 3 5 5 C 1.52997 * 109.46947 * 184.99869 * 4 2 1 6 6 C 1.50706 * 109.47238 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99515 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00176 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00200 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 120.00139 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47145 * 89.99836 * 10 8 6 12 12 H 1.48496 * 109.47547 * 210.00333 * 10 8 6 13 13 H 1.48499 * 109.47030 * 330.00237 * 10 8 6 14 14 N 1.46900 * 109.46845 * 239.99882 * 2 1 3 15 15 C 1.46906 * 111.00040 * 85.00043 * 14 2 1 16 16 C 1.52994 * 109.47254 * 180.02562 * 15 14 2 17 17 C 1.52997 * 109.47214 * 179.97438 * 16 15 14 18 18 C 1.53001 * 109.47220 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.47098 * 180.02562 * 18 17 16 20 20 C 1.38236 * 119.99931 * 269.72485 * 19 18 17 21 21 C 1.38235 * 119.99711 * 179.76670 * 20 19 18 22 22 C 1.38231 * 120.00088 * 0.51100 * 21 20 19 23 23 C 1.38235 * 120.00047 * 359.74282 * 22 21 20 24 24 C 1.38231 * 120.00007 * 90.00255 * 19 18 17 25 25 H 1.08992 * 109.47388 * 60.00185 * 1 2 3 26 26 H 1.09009 * 109.46555 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.46824 * 299.99940 * 1 2 3 28 28 H 1.09001 * 109.47372 * 65.00179 * 4 2 1 29 29 H 1.09004 * 109.47108 * 304.99923 * 4 2 1 30 30 H 1.09001 * 109.46832 * 59.99979 * 5 4 2 31 31 H 1.09000 * 109.47611 * 300.00276 * 5 4 2 32 32 H 0.96999 * 120.00061 * 179.97438 * 9 8 6 33 33 H 1.00901 * 111.00620 * 321.04668 * 14 2 1 34 34 H 1.09006 * 109.46766 * 299.99489 * 15 14 2 35 35 H 1.08994 * 109.46966 * 59.99635 * 15 14 2 36 36 H 1.09005 * 109.47102 * 299.99848 * 16 15 14 37 37 H 1.09003 * 109.47452 * 59.99307 * 16 15 14 38 38 H 1.08997 * 109.47371 * 299.99838 * 17 16 15 39 39 H 1.09006 * 109.46944 * 60.00026 * 17 16 15 40 40 H 1.09005 * 109.47308 * 300.00119 * 18 17 16 41 41 H 1.08994 * 109.47103 * 59.99629 * 18 17 16 42 42 H 1.07996 * 119.99635 * 359.97438 * 20 19 18 43 43 H 1.08005 * 119.99719 * 180.23331 * 21 20 19 44 44 H 1.07999 * 119.99879 * 179.72425 * 22 21 20 45 45 H 1.08003 * 119.99630 * 179.97438 * 23 22 21 46 46 H 1.08004 * 120.00097 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3136 6 6 4.0673 -1.3232 2.5444 7 1 3.3688 -1.8036 3.2135 8 6 5.4184 -1.3592 2.8162 9 7 5.8569 -1.9791 3.8900 10 14 6.6266 -0.5288 1.6585 11 1 6.8312 0.8793 2.0834 12 1 7.9238 -1.2505 1.6956 13 1 6.0851 -0.5549 0.2760 14 7 2.0197 -0.6925 -1.1994 15 6 2.0825 0.2226 -2.3470 16 6 2.5949 -0.5332 -3.5745 17 6 2.6597 0.4197 -4.7698 18 6 3.1728 -0.3360 -5.9972 19 6 3.2372 0.6028 -7.1744 20 6 2.1443 0.7400 -8.0096 21 6 2.2017 1.6047 -9.0866 22 6 3.3556 2.3243 -9.3344 23 6 4.4503 2.1832 -8.5022 24 6 4.3911 1.3224 -7.4222 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.7518 -1.7715 1.2056 29 1 1.6055 -0.2617 2.1370 30 1 3.8532 0.4370 1.3572 31 1 3.9995 -1.0727 0.4258 32 1 6.8075 -2.0048 4.0810 33 1 1.4496 -1.4980 -1.4101 34 1 1.0870 0.6162 -2.5526 35 1 2.7588 1.0461 -2.1183 36 1 3.5903 -0.9273 -3.3692 37 1 1.9182 -1.3566 -3.8030 38 1 1.6642 0.8134 -4.9750 39 1 3.3363 1.2433 -4.5415 40 1 4.1684 -0.7294 -5.7918 41 1 2.4967 -1.1598 -6.2256 42 1 1.2445 0.1741 -7.8187 43 1 1.3465 1.7147 -9.7369 44 1 3.4020 2.9965 -10.1784 45 1 5.3520 2.7451 -8.6962 46 1 5.2464 1.2122 -6.7720 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488701.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:43 Heat of formation + Delta-G solvation = -13.559933 kcal Electronic energy + Delta-G solvation = -20144.842252 eV Core-core repulsion = 17225.613575 eV Total energy + Delta-G solvation = -2919.228677 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.57547 -37.60495 -35.53280 -33.33948 -32.27023 -31.15011 -30.57860 -29.23181 -26.92716 -25.23436 -23.36973 -22.83516 -21.34092 -21.13750 -20.83892 -19.69356 -17.02717 -16.53360 -16.00922 -15.47239 -15.39523 -15.08079 -14.49914 -14.11833 -13.81212 -13.69628 -13.57443 -13.37034 -12.84152 -12.62872 -12.53665 -12.40036 -12.22503 -12.03202 -11.55031 -11.52156 -11.33384 -11.18289 -11.09521 -10.98877 -10.69474 -10.62550 -10.35232 -9.78144 -9.60152 -9.43286 -9.19042 -8.97977 -8.92201 -8.40300 -7.96471 -5.91714 -3.87532 1.09423 1.13145 3.40724 3.47490 3.51324 3.56259 4.30619 4.56241 4.58453 4.61165 4.74083 4.85878 4.87018 4.97033 5.17395 5.23101 5.26951 5.32630 5.36676 5.44115 5.45286 5.58322 5.61029 5.64578 5.68314 5.73771 5.80389 5.88382 5.96122 6.03222 6.19426 6.20420 6.24095 6.25130 6.28665 6.36104 6.42179 6.58501 6.74855 6.75734 7.14549 7.40213 7.55961 7.73913 7.79724 7.97536 8.68983 9.14571 9.72677 11.22196 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.018902 B = 0.002920 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.963234 B = 9586.694518 C =10762.647865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.081 3.919 3 H 0.070 0.930 4 C -0.090 4.090 5 C -0.006 4.006 6 C -0.516 4.516 7 H 0.068 0.932 8 C 0.063 3.937 9 N -0.910 5.910 10 Si 0.880 3.120 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.261 1.261 14 N -0.677 5.677 15 C 0.060 3.940 16 C -0.119 4.119 17 C -0.110 4.110 18 C -0.083 4.083 19 C -0.077 4.077 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.129 4.129 23 C -0.119 4.119 24 C -0.118 4.118 25 H 0.044 0.956 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.001 0.999 31 H 0.031 0.969 32 H 0.260 0.740 33 H 0.336 0.664 34 H 0.022 0.978 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.765 7.343 -26.226 28.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.029 4.029 3 H 0.089 0.911 4 C -0.128 4.128 5 C -0.044 4.044 6 C -0.554 4.554 7 H 0.086 0.914 8 C -0.137 4.137 9 N -0.550 5.550 10 Si 0.707 3.293 11 H -0.207 1.207 12 H -0.217 1.217 13 H -0.185 1.185 14 N -0.307 5.307 15 C -0.069 4.069 16 C -0.156 4.156 17 C -0.148 4.148 18 C -0.120 4.120 19 C -0.077 4.077 20 C -0.138 4.138 21 C -0.138 4.138 22 C -0.147 4.147 23 C -0.137 4.137 24 C -0.136 4.136 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.020 0.980 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.153 0.847 34 H 0.040 0.960 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.936 7.379 -25.960 28.131 hybrid contribution -0.238 0.581 -0.706 0.945 sum -8.173 7.960 -26.666 29.004 Atomic orbital electron populations 1.22514 0.98383 1.01662 1.01311 1.21764 0.91253 0.98235 0.91634 0.91142 1.21454 0.98957 0.99037 0.93383 1.19473 0.91560 0.95787 0.97556 1.21272 0.92806 1.33877 1.07423 0.91433 1.25031 0.98464 0.95148 0.95080 1.69933 1.14386 1.44167 1.26530 0.86765 0.80371 0.79432 0.82711 1.20659 1.21712 1.18527 1.60537 1.57692 1.09230 1.03212 1.21957 0.98637 0.95882 0.90471 1.21589 1.02624 0.98040 0.93387 1.21515 1.01292 0.98496 0.93503 1.20657 1.02591 0.96606 0.92140 1.19997 0.93770 0.97551 0.96390 1.21076 0.98252 0.99187 0.95237 1.21145 0.98029 0.96858 0.97766 1.21135 0.93677 1.00096 0.99835 1.21169 0.98586 0.98633 0.95290 1.21123 0.97904 0.96821 0.97759 0.93731 0.92668 0.92169 0.92879 0.92964 0.98024 0.95026 0.93003 0.84652 0.96033 0.91307 0.90762 0.92215 0.92127 0.91741 0.90714 0.90965 0.86167 0.86238 0.86313 0.86154 0.85973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.36 9.16 37.16 0.34 -2.02 16 2 C 0.08 1.30 2.59 -67.71 -0.18 1.13 16 3 H 0.07 1.17 7.80 -51.93 -0.41 0.77 16 4 C -0.09 -1.83 4.83 -26.73 -0.13 -1.96 16 5 C -0.01 -0.16 3.93 -27.88 -0.11 -0.27 16 6 C -0.52 -15.28 9.66 -34.44 -0.33 -15.61 16 7 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 8 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 9 N -0.91 -29.03 13.96 55.43 0.77 -28.26 16 10 Si 0.88 22.69 27.47 -169.99 -4.67 18.02 16 11 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 13 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 14 N -0.68 -10.35 5.70 -106.72 -0.61 -10.96 16 15 C 0.06 0.77 5.48 -3.82 -0.02 0.75 16 16 C -0.12 -1.30 5.47 -26.74 -0.15 -1.45 16 17 C -0.11 -1.04 5.20 -26.73 -0.14 -1.18 16 18 C -0.08 -0.72 5.35 -27.88 -0.15 -0.87 16 19 C -0.08 -0.72 5.13 -104.63 -0.54 -1.25 16 20 C -0.12 -1.04 9.70 -39.58 -0.38 -1.42 16 21 C -0.12 -0.97 10.05 -39.59 -0.40 -1.37 16 22 C -0.13 -1.04 10.05 -39.59 -0.40 -1.43 16 23 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 24 C -0.12 -1.09 9.70 -39.59 -0.38 -1.47 16 25 H 0.04 0.53 7.45 -51.93 -0.39 0.14 16 26 H 0.05 0.70 8.13 -51.92 -0.42 0.27 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.00 0.04 7.57 -51.93 -0.39 -0.36 16 31 H 0.03 0.81 6.81 -51.93 -0.35 0.45 16 32 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 33 H 0.34 4.65 8.47 -39.29 -0.33 4.31 16 34 H 0.02 0.25 7.44 -51.93 -0.39 -0.13 16 35 H 0.07 0.95 8.05 -51.93 -0.42 0.53 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 41 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 42 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 44 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 45 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 46 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 LS Contribution 371.17 15.07 5.59 5.59 Total: -1.00 -32.32 371.17 -10.97 -43.29 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -8.60 Total: 0.34 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: -3.46 Total: -28.02 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.16 Total: -39.22 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.67 Total: 18.02 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.32 -10.97 -43.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488701.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.726 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds