Wall clock time and date at job start Mon Mar 30 2020 01:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.46753 * 2 1 4 4 C 1.52996 * 109.47194 * 120.00051 * 2 1 3 5 5 C 1.52997 * 109.46947 * 184.99869 * 4 2 1 6 6 C 1.50706 * 109.47238 * 179.97438 * 5 4 2 7 7 H 1.07999 * 119.99515 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00176 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00200 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 120.00139 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47145 * 89.99836 * 10 8 6 12 12 H 1.48496 * 109.47547 * 210.00333 * 10 8 6 13 13 H 1.48499 * 109.47030 * 330.00237 * 10 8 6 14 14 N 1.46900 * 109.46845 * 239.99882 * 2 1 3 15 15 C 1.46906 * 111.00040 * 85.00043 * 14 2 1 16 16 C 1.52994 * 109.47254 * 180.02562 * 15 14 2 17 17 C 1.52997 * 109.47214 * 179.97438 * 16 15 14 18 18 C 1.53001 * 109.47220 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.47098 * 180.02562 * 18 17 16 20 20 C 1.38236 * 119.99931 * 269.72485 * 19 18 17 21 21 C 1.38235 * 119.99711 * 179.76670 * 20 19 18 22 22 C 1.38231 * 120.00088 * 0.51100 * 21 20 19 23 23 C 1.38235 * 120.00047 * 359.74282 * 22 21 20 24 24 C 1.38231 * 120.00007 * 90.00255 * 19 18 17 25 25 H 1.08992 * 109.47388 * 60.00185 * 1 2 3 26 26 H 1.09009 * 109.46555 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.46824 * 299.99940 * 1 2 3 28 28 H 1.09001 * 109.47372 * 65.00179 * 4 2 1 29 29 H 1.09004 * 109.47108 * 304.99923 * 4 2 1 30 30 H 1.09001 * 109.46832 * 59.99979 * 5 4 2 31 31 H 1.09000 * 109.47611 * 300.00276 * 5 4 2 32 32 H 0.96999 * 120.00061 * 179.97438 * 9 8 6 33 33 H 1.00901 * 111.00620 * 321.04668 * 14 2 1 34 34 H 1.09006 * 109.46766 * 299.99489 * 15 14 2 35 35 H 1.08994 * 109.46966 * 59.99635 * 15 14 2 36 36 H 1.09005 * 109.47102 * 299.99848 * 16 15 14 37 37 H 1.09003 * 109.47452 * 59.99307 * 16 15 14 38 38 H 1.08997 * 109.47371 * 299.99838 * 17 16 15 39 39 H 1.09006 * 109.46944 * 60.00026 * 17 16 15 40 40 H 1.09005 * 109.47308 * 300.00119 * 18 17 16 41 41 H 1.08994 * 109.47103 * 59.99629 * 18 17 16 42 42 H 1.07996 * 119.99635 * 359.97438 * 20 19 18 43 43 H 1.08005 * 119.99719 * 180.23331 * 21 20 19 44 44 H 1.07999 * 119.99879 * 179.72425 * 22 21 20 45 45 H 1.08003 * 119.99630 * 179.97438 * 23 22 21 46 46 H 1.08004 * 120.00097 * 359.97438 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3136 6 6 4.0673 -1.3232 2.5444 7 1 3.3688 -1.8036 3.2135 8 6 5.4184 -1.3592 2.8162 9 7 5.8569 -1.9791 3.8900 10 14 6.6266 -0.5288 1.6585 11 1 6.8312 0.8793 2.0834 12 1 7.9238 -1.2505 1.6956 13 1 6.0851 -0.5549 0.2760 14 7 2.0197 -0.6925 -1.1994 15 6 2.0825 0.2226 -2.3470 16 6 2.5949 -0.5332 -3.5745 17 6 2.6597 0.4197 -4.7698 18 6 3.1728 -0.3360 -5.9972 19 6 3.2372 0.6028 -7.1744 20 6 2.1443 0.7400 -8.0096 21 6 2.2017 1.6047 -9.0866 22 6 3.3556 2.3243 -9.3344 23 6 4.4503 2.1832 -8.5022 24 6 4.3911 1.3224 -7.4222 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.7518 -1.7715 1.2056 29 1 1.6055 -0.2617 2.1370 30 1 3.8532 0.4370 1.3572 31 1 3.9995 -1.0727 0.4258 32 1 6.8075 -2.0048 4.0810 33 1 1.4496 -1.4980 -1.4101 34 1 1.0870 0.6162 -2.5526 35 1 2.7588 1.0461 -2.1183 36 1 3.5903 -0.9273 -3.3692 37 1 1.9182 -1.3566 -3.8030 38 1 1.6642 0.8134 -4.9750 39 1 3.3363 1.2433 -4.5415 40 1 4.1684 -0.7294 -5.7918 41 1 2.4967 -1.1598 -6.2256 42 1 1.2445 0.1741 -7.8187 43 1 1.3465 1.7147 -9.7369 44 1 3.4020 2.9965 -10.1784 45 1 5.3520 2.7451 -8.6962 46 1 5.2464 1.2122 -6.7720 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172488701.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:43 Heat of formation + Delta-G solvation = -30.815832 kcal Electronic energy + Delta-G solvation = -20145.590524 eV Core-core repulsion = 17225.613575 eV Total energy + Delta-G solvation = -2919.976949 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.18542 -38.80554 -36.49401 -35.15130 -33.65872 -32.03610 -31.74500 -30.43644 -27.77959 -27.06334 -24.26816 -23.43615 -22.76434 -22.26946 -21.66698 -21.17336 -18.80690 -17.61437 -16.85726 -16.52677 -16.30797 -16.13523 -15.95164 -15.52352 -14.86296 -14.66493 -14.52650 -14.23205 -14.14538 -14.12951 -13.75651 -13.58755 -13.24528 -13.08867 -12.96493 -12.86494 -12.40536 -12.29786 -12.06511 -11.97257 -11.81421 -11.70069 -11.53727 -11.45726 -11.41561 -11.32320 -11.05604 -10.71739 -9.80479 -9.55872 -9.12880 -8.26081 -6.28041 0.47431 0.51641 1.35812 1.38633 1.53406 2.39792 2.88945 3.10057 3.29039 3.88059 3.93755 4.00936 4.11793 4.14390 4.20072 4.30787 4.32205 4.39963 4.46170 4.53819 4.66099 4.68057 4.70842 4.73911 4.82631 4.89407 4.93142 4.95916 5.02968 5.04166 5.14567 5.19362 5.23261 5.25018 5.37000 5.40184 5.47810 5.60390 5.60435 5.64690 5.71442 5.77526 5.78950 6.15756 6.29128 6.35165 6.65914 6.80609 7.36338 8.91067 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.018902 B = 0.002920 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.963234 B = 9586.694518 C =10762.647865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.089 3.911 3 H 0.067 0.933 4 C -0.086 4.086 5 C 0.002 3.998 6 C -0.529 4.529 7 H 0.028 0.972 8 C 0.000 4.000 9 N -0.956 5.956 10 Si 0.952 3.048 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.248 1.248 14 N -0.696 5.696 15 C 0.063 3.937 16 C -0.111 4.111 17 C -0.101 4.101 18 C -0.078 4.078 19 C -0.091 4.091 20 C -0.130 4.130 21 C -0.127 4.127 22 C -0.137 4.137 23 C -0.129 4.129 24 C -0.136 4.136 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.003 0.997 31 H 0.027 0.973 32 H 0.264 0.736 33 H 0.344 0.656 34 H 0.038 0.962 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.133 0.867 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.135 0.865 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.464 8.575 -28.864 31.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 H 0.085 0.915 4 C -0.124 4.124 5 C -0.036 4.036 6 C -0.567 4.567 7 H 0.046 0.954 8 C -0.195 4.195 9 N -0.597 5.597 10 Si 0.776 3.224 11 H -0.194 1.194 12 H -0.210 1.210 13 H -0.171 1.171 14 N -0.328 5.328 15 C -0.066 4.066 16 C -0.149 4.149 17 C -0.139 4.139 18 C -0.115 4.115 19 C -0.091 4.091 20 C -0.148 4.148 21 C -0.145 4.145 22 C -0.155 4.155 23 C -0.147 4.147 24 C -0.154 4.154 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.021 0.979 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.163 0.837 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.151 0.849 43 H 0.157 0.843 44 H 0.156 0.844 45 H 0.153 0.847 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.656 8.613 -28.608 31.105 hybrid contribution -0.055 0.152 0.166 0.231 sum -8.711 8.765 -28.442 31.011 Atomic orbital electron populations 1.22386 0.95662 1.02400 1.02428 1.21525 0.93325 0.97154 0.90069 0.91486 1.21356 0.95905 0.99299 0.95849 1.19362 0.94655 0.94791 0.94766 1.21658 0.92586 1.33907 1.08579 0.95353 1.26023 1.00720 0.95897 0.96893 1.70083 1.15129 1.45846 1.28655 0.85621 0.77566 0.78571 0.80660 1.19414 1.21017 1.17133 1.60441 1.58341 1.10164 1.03805 1.21961 0.99311 0.95263 0.90073 1.21513 1.01749 0.98454 0.93186 1.21414 1.01472 0.97887 0.93126 1.20602 1.02512 0.96679 0.91739 1.20113 0.94177 0.97943 0.96842 1.21311 0.98557 0.99558 0.95392 1.21461 0.98780 0.96436 0.97823 1.21455 0.93483 1.00254 1.00277 1.21435 0.99494 0.98636 0.95163 1.21306 0.98215 0.97456 0.98407 0.91736 0.92150 0.91910 0.93643 0.93423 0.97871 0.95432 0.92678 0.83740 0.94353 0.92584 0.92500 0.91084 0.91453 0.92598 0.91166 0.90135 0.84949 0.84286 0.84366 0.84738 0.85812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.02 9.16 71.98 0.66 -3.36 16 2 C 0.09 2.73 2.59 44.92 0.12 2.84 16 3 H 0.07 2.11 7.80 -2.39 -0.02 2.09 16 4 C -0.09 -3.46 4.83 30.59 0.15 -3.31 16 5 C 0.00 0.08 3.93 29.85 0.12 0.20 16 6 C -0.53 -32.10 9.66 25.60 0.25 -31.85 16 7 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 8 C 0.00 0.03 5.47 84.65 0.46 0.49 16 9 N -0.96 -62.28 13.96 21.44 0.30 -61.98 16 10 Si 0.95 46.84 27.47 68.60 1.88 48.73 16 11 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 13 H -0.25 -11.57 6.54 99.48 0.65 -10.92 16 14 N -0.70 -20.05 5.70 -491.56 -2.80 -22.86 16 15 C 0.06 1.48 5.48 86.30 0.47 1.95 16 16 C -0.11 -2.24 5.47 30.59 0.17 -2.07 16 17 C -0.10 -1.74 5.20 30.59 0.16 -1.58 16 18 C -0.08 -1.26 5.35 29.85 0.16 -1.10 16 19 C -0.09 -1.58 5.13 -19.87 -0.10 -1.68 16 20 C -0.13 -2.04 9.70 22.27 0.22 -1.82 16 21 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 22 C -0.14 -1.94 10.05 22.27 0.22 -1.71 16 23 C -0.13 -2.02 10.05 22.27 0.22 -1.79 16 24 C -0.14 -2.39 9.70 22.27 0.22 -2.17 16 25 H 0.06 1.29 7.45 -2.39 -0.02 1.28 16 26 H 0.06 1.37 8.13 -2.38 -0.02 1.35 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.04 1.86 8.14 -2.39 -0.02 1.85 16 29 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.00 0.15 7.57 -2.39 -0.02 0.13 16 31 H 0.03 1.38 6.81 -2.39 -0.02 1.37 16 32 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 33 H 0.34 8.83 8.47 -89.69 -0.76 8.07 16 34 H 0.04 0.78 7.44 -2.38 -0.02 0.77 16 35 H 0.06 1.46 8.05 -2.39 -0.02 1.44 16 36 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.07 1.18 8.09 -2.38 -0.02 1.16 16 41 H 0.08 1.15 8.08 -2.39 -0.02 1.13 16 42 H 0.13 1.64 8.06 -2.91 -0.02 1.62 16 43 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 44 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 45 H 0.13 1.58 8.06 -2.91 -0.02 1.56 16 46 H 0.12 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -70.11 371.17 3.18 -66.92 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.09 Total: 17.74 kcal Atomic # 6 Polarization: -52.26 SS G_CDS: 3.71 Total: -48.55 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -2.50 Total: -84.84 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 1.88 Total: 48.73 kcal Total: -70.11 3.18 -66.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488701.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.109 kcal (2) G-P(sol) polarization free energy of solvation -70.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds